Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47215 * 2 1 4 4 N 1.46900 * 109.47212 * 180.02562 * 3 2 1 5 5 C 1.47010 * 111.00106 * 293.95823 * 4 3 2 6 6 C 1.53098 * 109.25803 * 177.60386 * 5 4 3 7 7 O 1.43016 * 109.25697 * 56.85234 * 6 5 4 8 8 C 1.43018 * 113.73298 * 301.32506 * 7 6 5 9 9 H 1.08995 * 109.50730 * 298.68966 * 8 7 6 10 10 C 1.50702 * 109.50565 * 178.60783 * 8 7 6 11 11 H 1.08002 * 120.00299 * 240.00544 * 10 8 7 12 12 C 1.37884 * 119.99942 * 59.72102 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.47003 * 111.00234 * 170.31877 * 4 3 2 19 19 H 1.09004 * 109.46808 * 300.00075 * 1 2 3 20 20 H 1.09003 * 109.46986 * 59.99465 * 1 2 3 21 21 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46976 * 240.00643 * 2 1 3 23 23 H 1.08994 * 109.47562 * 120.00586 * 2 1 3 24 24 H 1.08999 * 109.46623 * 60.00428 * 3 2 1 25 25 H 1.09001 * 109.47128 * 300.00447 * 3 2 1 26 26 H 1.08998 * 109.50920 * 57.67097 * 5 4 3 27 27 H 1.08998 * 109.50837 * 297.54219 * 5 4 3 28 28 H 1.09000 * 109.50932 * 296.91224 * 6 5 4 29 29 H 1.09002 * 109.54125 * 176.80283 * 6 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.50864 * 62.45681 * 18 4 3 32 32 H 1.09004 * 109.50803 * 302.33014 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0364 0.8850 1.2533 6 6 5.5655 0.8485 1.1859 7 8 6.0579 2.1667 0.9301 8 6 5.5649 2.7398 -0.2838 9 1 5.8787 2.1276 -1.1292 10 6 6.1140 4.1344 -0.4413 11 1 5.4404 4.9764 -0.5018 12 6 7.4767 4.3359 -0.5022 13 7 8.2969 3.3105 -0.4285 14 14 8.1576 6.0652 -0.6896 15 1 8.3806 6.6577 0.6537 16 1 9.4452 6.0129 -1.4275 17 1 7.1883 6.8999 -1.4440 18 6 4.0358 2.7954 -0.2314 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6766 1.9564 -0.8900 26 1 3.6540 -0.1263 1.3913 27 1 3.7237 1.5103 2.0895 28 1 5.8787 0.1808 0.3834 29 1 5.9637 0.4890 2.1348 30 1 9.2556 3.4523 -0.4717 31 1 3.7231 3.4513 0.5810 32 1 3.6529 3.1786 -1.1773 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = -73.156701 kcal Electronic energy + Delta-G solvation = -13243.282865 eV Core-core repulsion = 11009.616584 eV Total energy + Delta-G solvation = -2233.666281 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.25117 -37.11173 -34.80982 -33.79759 -31.95250 -29.03947 -27.19797 -24.89434 -24.17546 -21.85723 -21.09881 -18.79592 -17.13824 -16.65835 -16.46238 -16.30375 -15.58486 -15.41536 -14.97247 -14.73580 -14.03821 -13.75467 -12.95891 -12.88124 -12.78383 -12.75695 -12.44925 -12.38904 -12.03730 -11.80413 -11.54808 -11.48073 -10.94502 -10.63488 -9.99443 -9.26332 -8.17506 -6.39475 1.41751 1.43911 1.54680 2.39674 2.94554 3.03813 3.70124 3.94886 4.08961 4.20406 4.28583 4.39808 4.46308 4.53949 4.58869 4.67099 4.78261 4.85646 4.87993 4.97877 5.02916 5.20405 5.31056 5.35124 5.43804 5.70010 5.96712 6.19250 6.21462 6.62318 7.10210 7.37197 8.91682 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.065670 B = 0.008368 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.274274 B = 3345.385796 C = 3645.627037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.053 3.947 4 N -0.551 5.551 5 C 0.030 3.970 6 C 0.049 3.951 7 O -0.397 6.397 8 C 0.222 3.778 9 H -0.016 1.016 10 C -0.557 4.557 11 H 0.068 0.932 12 C 0.023 3.977 13 N -0.900 5.900 14 Si 0.969 3.031 15 H -0.275 1.275 16 H -0.278 1.278 17 H -0.260 1.260 18 C 0.047 3.953 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.096 0.904 30 H 0.263 0.737 31 H 0.021 0.979 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 -4.916 1.823 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.074 4.074 4 N -0.276 5.276 5 C -0.098 4.098 6 C -0.028 4.028 7 O -0.316 6.316 8 C 0.166 3.834 9 H 0.002 0.998 10 C -0.594 4.594 11 H 0.086 0.914 12 C -0.179 4.179 13 N -0.536 5.536 14 Si 0.793 3.207 15 H -0.200 1.200 16 H -0.203 1.203 17 H -0.184 1.184 18 C -0.081 4.081 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.350 -5.181 1.549 12.572 hybrid contribution 0.283 1.086 0.403 1.192 sum -11.067 -4.095 1.952 11.961 Atomic orbital electron populations 1.21697 0.93938 1.02515 1.02060 1.21503 0.96624 0.94807 1.02388 1.22268 0.85893 0.98640 1.00634 1.62266 1.08728 1.21872 1.34780 1.22747 0.95980 1.00943 0.90090 1.22627 0.92935 0.86844 1.00440 1.88294 1.71101 1.28527 1.43728 1.19581 0.88104 0.92701 0.83003 0.99798 1.21392 0.92772 0.92679 1.52594 0.91416 1.26001 0.97379 1.01509 0.93028 1.70191 1.03216 1.32398 1.47826 0.85412 0.77908 0.78989 0.78407 1.20011 1.20346 1.18391 1.22611 0.97204 0.88447 0.99810 0.92551 0.92412 0.91311 0.91831 0.91804 0.95148 0.90846 0.87727 0.95160 0.95080 0.88607 0.92769 0.96061 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.91 71.98 0.71 -1.84 16 2 C -0.12 -2.67 5.86 30.60 0.18 -2.49 16 3 C 0.05 1.55 4.96 86.30 0.43 1.98 16 4 N -0.55 -20.89 4.73 -895.24 -4.23 -25.12 16 5 C 0.03 1.08 5.43 86.31 0.47 1.55 16 6 C 0.05 2.11 7.01 72.01 0.50 2.61 16 7 O -0.40 -22.08 9.85 -148.98 -1.47 -23.55 16 8 C 0.22 12.31 2.66 29.88 0.08 12.39 16 9 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 10 C -0.56 -32.58 8.80 25.60 0.23 -32.35 16 11 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 12 C 0.02 1.36 5.40 84.66 0.46 1.82 16 13 N -0.90 -55.47 12.83 21.45 0.28 -55.20 16 14 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 15 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 18 C 0.05 2.13 4.87 86.32 0.42 2.55 16 19 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 20 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.43 6.51 -2.39 -0.02 1.41 16 24 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 25 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16 26 H 0.10 3.01 6.37 -2.39 -0.02 2.99 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 3.22 8.09 -2.39 -0.02 3.20 16 Total: -1.00 -67.06 259.64 1.14 -65.92 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.06 Total: 5.18 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 3.48 Total: -13.78 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -3.96 Total: -80.32 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -1.47 Total: -23.55 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.06 1.14 -65.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.239 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds