Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47608 * 2 1 4 4 N 1.46894 * 109.47280 * 180.02562 * 3 2 1 5 5 C 1.47010 * 111.00052 * 46.36430 * 4 3 2 6 6 C 1.53103 * 109.26073 * 182.38957 * 5 4 3 7 7 O 1.43012 * 109.25715 * 303.16031 * 6 5 4 8 8 C 1.43012 * 113.74365 * 58.66867 * 7 6 5 9 9 H 1.08996 * 109.54161 * 61.28423 * 8 7 6 10 10 C 1.50702 * 109.50691 * 181.39463 * 8 7 6 11 11 H 1.08006 * 119.99737 * 119.78115 * 10 8 7 12 12 C 1.37872 * 120.00227 * 299.77875 * 10 8 7 13 13 N 1.31512 * 120.00149 * 179.97438 * 12 10 8 14 14 Si 1.86809 * 119.99794 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47020 * 90.00007 * 14 12 10 16 16 H 1.48494 * 109.46902 * 209.99957 * 14 12 10 17 17 H 1.48494 * 109.46836 * 329.99900 * 14 12 10 18 18 C 1.47016 * 111.00272 * 170.00664 * 4 3 2 19 19 H 1.09006 * 109.47143 * 59.99245 * 1 2 3 20 20 H 1.08995 * 109.47335 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46649 * 299.99907 * 1 2 3 22 22 H 1.09005 * 109.46649 * 240.00092 * 2 1 3 23 23 H 1.09006 * 109.47143 * 120.00755 * 2 1 3 24 24 H 1.09002 * 109.46578 * 60.00532 * 3 2 1 25 25 H 1.08993 * 109.47297 * 300.00763 * 3 2 1 26 26 H 1.09008 * 109.50529 * 62.46151 * 5 4 3 27 27 H 1.08995 * 109.51144 * 302.32740 * 5 4 3 28 28 H 1.08995 * 109.50870 * 183.21645 * 6 5 4 29 29 H 1.09004 * 109.53671 * 63.10839 * 6 5 4 30 30 H 0.97006 * 119.99688 * 179.97438 * 13 12 10 31 31 H 1.08999 * 109.50851 * 57.66502 * 18 4 3 32 32 H 1.09004 * 109.50278 * 297.54265 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0354 0.4954 -0.9943 6 6 5.5646 0.4834 -0.9200 7 8 6.0571 1.8107 -1.1228 8 6 5.5651 2.7590 -0.1721 9 1 5.8790 2.4670 0.8300 10 6 6.1142 4.1251 -0.4935 11 1 5.4406 4.9376 -0.7226 12 6 7.4764 4.3376 -0.4950 13 7 7.9557 5.5297 -0.7760 14 14 8.6415 2.9320 -0.0994 15 1 9.0016 2.2201 -1.3519 16 1 9.8712 3.4718 0.5342 17 1 7.9778 1.9868 0.8339 18 6 4.0359 2.7940 -0.2388 19 1 -0.3634 0.5140 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5140 0.8900 24 1 1.6768 1.9562 0.8901 25 1 1.6767 1.9563 -0.8898 26 1 3.7219 0.8030 -1.9920 27 1 3.6530 -0.5033 -0.7837 28 1 5.9614 -0.1742 -1.6933 29 1 5.8792 0.1243 0.0599 30 1 8.9141 5.6792 -0.7767 31 1 3.6537 3.4732 0.5232 32 1 3.7224 3.1384 -1.2244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909653.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = -46.041984 kcal Electronic energy + Delta-G solvation = -13340.864660 eV Core-core repulsion = 11108.374161 eV Total energy + Delta-G solvation = -2232.490499 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.89130 -35.89237 -32.73611 -32.63595 -30.49413 -27.70227 -25.73318 -23.51717 -22.59902 -20.42173 -19.51926 -16.99945 -15.82901 -15.36114 -15.01021 -14.46232 -14.25721 -13.86364 -13.62928 -13.27544 -12.60903 -12.44870 -11.95475 -11.69828 -11.37651 -11.09888 -10.91442 -10.72286 -10.53061 -10.26853 -10.03297 -9.62855 -9.17639 -8.60773 -8.50376 -7.84567 -6.11814 -4.21355 3.44679 3.48786 3.58471 4.27691 4.50389 4.79519 4.95624 5.04419 5.30218 5.44947 5.51718 5.61177 5.66944 5.74004 5.80908 5.87550 5.97571 6.09053 6.17148 6.25730 6.26979 6.30835 6.40064 6.55868 7.01541 7.42303 7.47612 7.69026 8.39456 8.48043 8.88357 9.50955 10.98085 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.065432 B = 0.009377 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.819597 B = 2985.438970 C = 3273.877960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.054 3.946 4 N -0.543 5.543 5 C 0.020 3.980 6 C 0.054 3.946 7 O -0.386 6.386 8 C 0.186 3.814 9 H 0.028 0.972 10 C -0.517 4.517 11 H 0.080 0.920 12 C 0.084 3.916 13 N -0.891 5.891 14 Si 0.910 3.090 15 H -0.276 1.276 16 H -0.301 1.301 17 H -0.269 1.269 18 C 0.041 3.959 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.267 0.733 31 H 0.076 0.924 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -11.047 1.330 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.074 4.074 4 N -0.268 5.268 5 C -0.108 4.108 6 C -0.024 4.024 7 O -0.306 6.306 8 C 0.130 3.870 9 H 0.045 0.955 10 C -0.554 4.554 11 H 0.098 0.902 12 C -0.121 4.121 13 N -0.528 5.528 14 Si 0.740 3.260 15 H -0.201 1.201 16 H -0.229 1.229 17 H -0.194 1.194 18 C -0.086 4.086 19 H 0.071 0.929 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.752 -11.025 1.626 14.808 hybrid contribution 0.102 -0.443 -0.522 0.692 sum -9.649 -11.468 1.104 15.028 Atomic orbital electron populations 1.21734 0.95842 1.01402 1.01765 1.21682 0.95389 0.97030 1.02460 1.22157 0.88164 0.96471 1.00566 1.62361 1.06597 1.09006 1.48871 1.22800 0.97325 0.96866 0.93813 1.22461 0.91677 0.87993 1.00296 1.88270 1.69792 1.15944 1.56633 1.20360 0.88441 0.88832 0.89369 0.95489 1.20871 0.92977 0.91777 1.49769 0.90153 1.25031 0.98526 0.95703 0.92820 1.69928 1.13673 1.21855 1.47332 0.86286 0.78711 0.81989 0.79060 1.20140 1.22896 1.19379 1.22746 0.98482 0.87615 0.99748 0.92924 0.92808 0.92678 0.91854 0.91265 0.90947 0.95256 0.94691 0.90508 0.90317 0.93796 0.92385 0.90585 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.13 -1.52 5.20 -26.73 -0.14 -1.66 16 3 C 0.05 0.80 5.28 -3.83 -0.02 0.78 16 4 N -0.54 -9.89 4.88 -234.31 -1.14 -11.03 16 5 C 0.02 0.34 4.94 -3.71 -0.02 0.33 16 6 C 0.05 1.03 7.01 37.21 0.26 1.30 16 7 O -0.39 -9.54 8.18 -35.23 -0.29 -9.83 16 8 C 0.19 4.68 2.13 -27.83 -0.06 4.62 16 9 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 10 C -0.52 -15.05 9.38 -34.44 -0.32 -15.38 16 11 H 0.08 2.47 7.99 -52.48 -0.42 2.05 16 12 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 13 N -0.89 -27.55 13.96 55.43 0.77 -26.78 16 14 Si 0.91 23.63 26.19 -169.99 -4.45 19.18 16 15 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 17 H -0.27 -6.81 6.54 56.52 0.37 -6.44 16 18 C 0.04 0.89 4.85 -3.71 -0.02 0.87 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.08 1.09 6.05 -51.93 -0.31 0.77 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 253.45 15.07 3.82 3.82 Total: -1.00 -31.17 253.45 -6.58 -37.75 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -5.25 Total: -5.27 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.05 Total: -7.83 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.37 Total: -37.82 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.29 Total: -9.83 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.45 Total: 19.18 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.17 -6.58 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909653.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.288 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds