Wall clock time and date at job start Mon Mar 30 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46905 * 109.47150 * 64.99640 * 10 9 7 13 13 C 1.52997 * 109.47504 * 184.99949 * 10 9 7 14 14 H 1.09004 * 109.52463 * 60.12377 * 13 10 9 15 15 C 1.53177 * 109.52367 * 180.31591 * 13 10 9 16 16 C 1.53181 * 109.03645 * 176.88602 * 15 13 10 17 17 C 1.53092 * 109.16247 * 303.01950 * 16 15 13 18 18 O 1.42907 * 109.41487 * 57.60821 * 17 16 15 19 19 C 1.42904 * 114.09821 * 298.84212 * 18 17 16 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.00898 * 110.99705 * 60.00524 * 12 10 9 24 24 H 1.00897 * 110.99904 * 183.95433 * 12 10 9 25 25 H 1.08995 * 109.54179 * 296.74776 * 15 13 10 26 26 H 1.08993 * 109.54304 * 57.02126 * 15 13 10 27 27 H 1.08993 * 109.52381 * 183.11037 * 16 15 13 28 28 H 1.09007 * 109.52061 * 62.91879 * 16 15 13 29 29 H 1.08998 * 109.48314 * 297.62474 * 17 16 15 30 30 H 1.08999 * 109.48019 * 177.58759 * 17 16 15 31 31 H 1.09004 * 109.47769 * 301.17960 * 19 18 17 32 32 H 1.08997 * 109.48256 * 181.14405 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 7 3.0083 -3.6539 1.2558 13 6 1.4843 -4.9836 -0.1252 14 1 0.9194 -4.9915 -1.0574 15 6 2.4781 -6.1492 -0.1174 16 6 1.7012 -7.4685 -0.1651 17 6 0.7315 -7.5237 1.0183 18 8 -0.1441 -6.3955 0.9680 19 6 0.5230 -5.1348 1.0566 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.3960 -3.7518 2.0518 24 1 3.7159 -4.3732 1.2534 25 1 3.1300 -6.0783 -0.9880 26 1 3.0770 -6.1115 0.7925 27 1 2.3983 -8.3041 -0.1042 28 1 1.1408 -7.5276 -1.0982 29 1 1.2949 -7.5053 1.9511 30 1 0.1454 -8.4413 0.9654 31 1 1.0838 -5.0852 1.9900 32 1 -0.2132 -4.3314 1.0316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:40 Heat of formation + Delta-G solvation = -67.398353 kcal Electronic energy + Delta-G solvation = -13280.924417 eV Core-core repulsion = 11047.507837 eV Total energy + Delta-G solvation = -2233.416581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.43926 -35.97744 -33.03477 -32.20915 -29.73864 -28.28526 -24.95667 -24.59528 -22.68087 -20.37864 -18.91549 -16.49147 -16.08090 -15.63338 -14.83625 -14.65676 -14.41502 -14.27486 -13.49072 -13.18929 -12.45379 -12.31168 -11.96651 -11.28873 -11.16435 -10.86951 -10.83030 -10.63375 -10.42404 -10.29192 -9.98597 -9.33345 -9.10038 -8.98155 -8.25727 -7.78045 -5.88391 -3.86630 3.41861 3.45334 3.49197 4.09708 4.56609 4.90903 4.96617 5.00037 5.19631 5.35989 5.38312 5.50857 5.60916 5.64671 5.80251 5.89822 6.00878 6.08114 6.16463 6.37028 6.52504 6.56241 6.94223 7.40552 7.58068 7.73595 8.03545 8.13197 8.21890 8.58502 9.19302 9.75190 11.23450 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.067739 B = 0.008139 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.253962 B = 3439.370222 C = 3652.248387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.050 3.950 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.494 4.494 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.104 3.896 11 H 0.069 0.931 12 N -0.827 5.827 13 C -0.158 4.158 14 H 0.078 0.922 15 C -0.119 4.119 16 C -0.154 4.154 17 C 0.060 3.940 18 O -0.386 6.386 19 C 0.065 3.935 20 H 0.258 0.742 21 H 0.017 0.983 22 H 0.019 0.981 23 H 0.331 0.669 24 H 0.318 0.682 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -13.386 1.340 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.150 4.150 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.533 4.533 8 H 0.078 0.922 9 C -0.009 4.009 10 C -0.008 4.008 11 H 0.087 0.913 12 N -0.355 5.355 13 C -0.179 4.179 14 H 0.096 0.904 15 C -0.157 4.157 16 C -0.192 4.192 17 C -0.017 4.017 18 O -0.304 6.304 19 C -0.011 4.011 20 H 0.068 0.932 21 H 0.035 0.965 22 H 0.037 0.963 23 H 0.145 0.855 24 H 0.130 0.870 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.061 -12.522 1.114 12.939 hybrid contribution 0.381 -0.031 0.109 0.398 sum 3.442 -12.553 1.223 13.074 Atomic orbital electron populations 1.69953 1.05978 1.26427 1.52044 1.25026 0.94812 0.99160 0.95991 0.86656 0.79462 0.83312 0.78478 1.20512 1.21624 1.20374 1.21144 0.93316 0.90272 1.48530 0.92155 1.19180 0.93157 0.91445 0.97075 1.21638 0.95214 0.92261 0.91665 0.91253 1.58828 1.18127 1.54206 1.04376 1.22674 0.97640 0.97486 1.00125 0.90363 1.21671 0.97928 0.94211 1.01870 1.22180 0.98917 0.98160 0.99961 1.22509 0.92751 0.89728 0.96738 1.87939 1.33737 1.14220 1.94526 1.22775 0.96670 0.85224 0.96463 0.93222 0.96463 0.96316 0.85514 0.87011 0.91660 0.92285 0.91510 0.91225 0.93738 0.89525 0.93796 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.49 -14.04 8.84 -34.44 -0.30 -14.34 16 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.03 0.72 4.12 -27.88 -0.11 0.60 16 10 C 0.10 2.05 2.57 -67.71 -0.17 1.88 16 11 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 12 N -0.83 -15.08 8.77 -4.67 -0.04 -15.12 16 13 C -0.16 -2.63 2.27 -90.48 -0.21 -2.84 16 14 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 15 C -0.12 -1.60 5.05 -26.55 -0.13 -1.73 16 16 C -0.15 -1.83 6.14 -26.59 -0.16 -1.99 16 17 C 0.06 0.75 6.84 37.20 0.25 1.00 16 18 O -0.39 -6.28 10.77 -35.23 -0.38 -6.65 16 19 C 0.07 1.09 5.43 37.20 0.20 1.29 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.02 0.46 6.77 -51.93 -0.35 0.10 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.33 5.86 7.12 -39.29 -0.28 5.58 16 24 H 0.32 4.86 7.32 -39.29 -0.29 4.57 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.74 6.62 -51.93 -0.34 0.40 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.69 6.55 -51.93 -0.34 0.35 16 32 H 0.11 1.99 6.69 -51.93 -0.35 1.65 16 LS Contribution 252.66 15.07 3.81 3.81 Total: -1.00 -30.55 252.66 -6.51 -37.06 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.87 Total: 5.10 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.74 Total: -14.78 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.70 Total: -41.82 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.38 Total: -6.65 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.55 -6.51 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.336 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds