Wall clock time and date at job start Mon Mar 30 2020 02:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46905 * 109.47150 * 64.99640 * 10 9 7 13 13 C 1.52997 * 109.47504 * 184.99949 * 10 9 7 14 14 H 1.09004 * 109.52463 * 60.12377 * 13 10 9 15 15 C 1.53177 * 109.52367 * 180.31591 * 13 10 9 16 16 C 1.53181 * 109.03645 * 176.88602 * 15 13 10 17 17 C 1.53092 * 109.16247 * 303.01950 * 16 15 13 18 18 O 1.42907 * 109.41487 * 57.60821 * 17 16 15 19 19 C 1.42904 * 114.09821 * 298.84212 * 18 17 16 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.00898 * 110.99705 * 60.00524 * 12 10 9 24 24 H 1.00897 * 110.99904 * 183.95433 * 12 10 9 25 25 H 1.08995 * 109.54179 * 296.74776 * 15 13 10 26 26 H 1.08993 * 109.54304 * 57.02126 * 15 13 10 27 27 H 1.08993 * 109.52381 * 183.11037 * 16 15 13 28 28 H 1.09007 * 109.52061 * 62.91879 * 16 15 13 29 29 H 1.08998 * 109.48314 * 297.62474 * 17 16 15 30 30 H 1.08999 * 109.48019 * 177.58759 * 17 16 15 31 31 H 1.09004 * 109.47769 * 301.17960 * 19 18 17 32 32 H 1.08997 * 109.48256 * 181.14405 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 7 3.0083 -3.6539 1.2558 13 6 1.4843 -4.9836 -0.1252 14 1 0.9194 -4.9915 -1.0574 15 6 2.4781 -6.1492 -0.1174 16 6 1.7012 -7.4685 -0.1651 17 6 0.7315 -7.5237 1.0183 18 8 -0.1441 -6.3955 0.9680 19 6 0.5230 -5.1348 1.0566 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.3960 -3.7518 2.0518 24 1 3.7159 -4.3732 1.2534 25 1 3.1300 -6.0783 -0.9880 26 1 3.0770 -6.1115 0.7925 27 1 2.3983 -8.3041 -0.1042 28 1 1.1408 -7.5276 -1.0982 29 1 1.2949 -7.5053 1.9511 30 1 0.1454 -8.4413 0.9654 31 1 1.0838 -5.0852 1.9900 32 1 -0.2132 -4.3314 1.0316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935256.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:40 Heat of formation + Delta-G solvation = -89.376181 kcal Electronic energy + Delta-G solvation = -13281.877447 eV Core-core repulsion = 11047.507837 eV Total energy + Delta-G solvation = -2234.369611 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.70269 -37.47765 -34.82413 -33.70843 -31.05968 -30.23284 -26.46648 -26.01463 -24.27098 -21.74996 -20.35662 -18.47677 -17.42112 -17.04594 -16.53560 -16.13986 -15.88363 -15.54238 -14.87605 -14.57436 -14.20805 -13.63396 -13.54592 -13.15602 -12.68540 -12.58439 -12.37406 -12.07201 -12.01639 -11.87179 -11.37183 -11.11116 -10.98202 -10.50861 -10.37054 -9.26754 -8.11238 -6.17254 1.41899 1.44930 1.52606 2.46897 2.93872 3.21711 3.79514 3.81313 3.87602 3.95151 4.07176 4.23979 4.43749 4.52359 4.66171 4.73550 4.79480 4.88807 4.95896 5.06634 5.13997 5.29711 5.36309 5.47950 5.71861 5.87784 6.23693 6.34147 6.55362 6.86623 6.97473 7.49261 9.00342 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.067739 B = 0.008139 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.253962 B = 3439.370222 C = 3652.248387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.034 3.966 10 C 0.118 3.882 11 H 0.062 0.938 12 N -0.833 5.833 13 C -0.150 4.150 14 H 0.059 0.941 15 C -0.114 4.114 16 C -0.149 4.149 17 C 0.050 3.950 18 O -0.406 6.406 19 C 0.072 3.928 20 H 0.259 0.741 21 H -0.002 1.002 22 H -0.012 1.012 23 H 0.335 0.665 24 H 0.340 0.660 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 -14.522 1.749 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.204 4.204 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.077 0.923 9 C -0.003 4.003 10 C 0.006 3.994 11 H 0.080 0.920 12 N -0.365 5.365 13 C -0.171 4.171 14 H 0.077 0.923 15 C -0.152 4.152 16 C -0.187 4.187 17 C -0.026 4.026 18 O -0.325 6.325 19 C -0.005 4.005 20 H 0.068 0.932 21 H 0.016 0.984 22 H 0.006 0.994 23 H 0.149 0.851 24 H 0.154 0.846 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.779 -13.685 1.523 14.575 hybrid contribution -0.171 0.267 -0.012 0.317 sum 4.609 -13.418 1.512 14.268 Atomic orbital electron populations 1.70093 1.07603 1.27330 1.53101 1.25919 0.95688 1.03060 0.95692 0.85568 0.78191 0.78722 0.78887 1.19523 1.21246 1.19588 1.21523 0.93428 0.91739 1.48007 0.92300 1.19038 0.93619 0.93059 0.94609 1.21233 0.94073 0.91801 0.92301 0.91954 1.58675 1.18538 1.55632 1.03618 1.22488 0.98010 0.97367 0.99201 0.92265 1.21646 0.97218 0.93358 1.02936 1.22163 0.99071 0.98141 0.99298 1.22840 0.93093 0.88946 0.97757 1.87909 1.35190 1.14729 1.94708 1.22535 0.95764 0.85167 0.97029 0.93205 0.98416 0.99411 0.85088 0.84569 0.90952 0.90837 0.88300 0.91931 0.92289 0.87323 0.92492 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 13.29 21.45 0.28 -58.11 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 3 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.51 -29.31 8.84 25.60 0.23 -29.08 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.78 4.12 29.85 0.12 1.90 16 10 C 0.12 4.67 2.57 44.91 0.12 4.78 16 11 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 12 N -0.83 -29.34 8.77 -168.67 -1.48 -30.82 16 13 C -0.15 -4.94 2.27 -10.70 -0.02 -4.96 16 14 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 15 C -0.11 -2.76 5.05 30.71 0.16 -2.60 16 16 C -0.15 -3.05 6.14 30.69 0.19 -2.86 16 17 C 0.05 1.10 6.84 72.01 0.49 1.59 16 18 O -0.41 -12.87 10.77 -148.98 -1.60 -14.48 16 19 C 0.07 2.42 5.43 72.01 0.39 2.81 16 20 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 21 H 0.00 -0.14 6.77 -2.39 -0.02 -0.15 16 22 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 23 H 0.34 11.49 7.12 -89.70 -0.64 10.86 16 24 H 0.34 9.51 7.32 -89.70 -0.66 8.85 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.58 6.62 -2.39 -0.02 1.57 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.74 6.55 -2.39 -0.02 1.72 16 32 H 0.07 2.87 6.69 -2.39 -0.02 2.85 16 Total: -1.00 -66.32 252.66 1.17 -65.15 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -0.19 Total: 18.71 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 2.13 Total: -28.40 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -1.19 Total: -88.93 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.60 Total: -14.48 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -66.32 1.17 -65.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935256.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.223 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds