Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48502 * 109.46907 * 270.00133 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99587 * 3 2 1 6 6 H 1.48496 * 109.47613 * 149.99480 * 3 2 1 7 7 C 1.38639 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00037 * 0.02562 * 7 2 1 9 9 O 1.34927 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.42900 * 117.00040 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47174 * 180.02562 * 10 9 7 12 12 H 1.09002 * 108.76231 * 55.00311 * 11 10 9 13 13 C 1.45861 * 108.79189 * 173.36729 * 11 10 9 14 14 C 1.54516 * 111.59642 * 182.09920 * 13 11 10 15 15 C 1.50471 * 108.84083 * 282.79100 * 14 13 11 16 16 C 1.54286 * 113.02595 * 92.15998 * 15 14 13 17 17 C 1.54064 * 112.29458 * 318.30165 * 16 15 14 18 18 N 1.44124 * 111.90406 * 318.94786 * 17 16 15 19 19 H 0.96996 * 120.00001 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47053 * 60.00796 * 10 9 7 21 21 H 1.09000 * 109.47168 * 300.01155 * 10 9 7 22 22 H 1.09004 * 109.05814 * 302.63804 * 13 11 10 23 23 H 1.08997 * 109.05957 * 61.55059 * 13 11 10 24 24 H 1.09000 * 109.57153 * 42.59607 * 14 13 11 25 25 H 1.09001 * 109.57523 * 162.85847 * 14 13 11 26 26 H 1.08996 * 108.76482 * 213.07546 * 15 14 13 27 27 H 1.08996 * 108.76926 * 331.24851 * 15 14 13 28 28 H 1.09002 * 108.91882 * 79.02593 * 16 15 14 29 29 H 1.09000 * 108.91593 * 197.57451 * 16 15 14 30 30 H 1.09003 * 108.97897 * 79.55692 * 17 16 15 31 31 H 1.09001 * 108.98451 * 198.35570 * 17 16 15 32 32 H 1.00905 * 111.07253 * 333.54734 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3583 -1.2006 0.0000 10 6 4.0070 -2.4739 0.0000 11 6 5.5238 -2.2734 0.0001 12 1 5.7938 -1.6406 0.8455 13 6 6.1694 -3.5716 0.1596 14 6 7.7076 -3.4382 0.2206 15 6 8.2321 -3.2202 -1.1727 16 6 8.3640 -1.7278 -1.5413 17 6 7.1622 -0.8967 -1.0527 18 7 5.9137 -1.5890 -1.2506 19 1 -0.4850 0.8400 -0.0004 20 1 3.7139 -3.0310 -0.8898 21 1 3.7144 -3.0308 0.8902 22 1 5.8155 -4.0342 1.0810 23 1 5.9006 -4.2087 -0.6830 24 1 7.9758 -2.5889 0.8489 25 1 8.1370 -4.3499 0.6360 26 1 9.2120 -3.6901 -1.2560 27 1 7.5552 -3.6979 -1.8810 28 1 9.2741 -1.3317 -1.0909 29 1 8.4395 -1.6368 -2.6248 30 1 7.2860 -0.6851 0.0094 31 1 7.1361 0.0450 -1.6009 32 1 5.9792 -2.2436 -2.0158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259941455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = -44.077313 kcal Electronic energy + Delta-G solvation = -13249.192218 eV Core-core repulsion = 11016.786913 eV Total energy + Delta-G solvation = -2232.405304 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.30157 -36.15229 -33.02275 -32.69821 -31.54197 -27.14059 -25.41650 -24.06156 -22.29960 -20.65143 -19.64467 -17.38286 -15.69851 -15.56555 -15.31570 -14.79313 -14.35100 -13.52655 -13.40367 -12.91778 -12.75551 -12.51890 -12.13392 -11.69826 -11.52081 -11.08569 -10.79006 -10.71471 -10.60007 -10.44047 -10.14189 -9.74025 -9.42454 -9.10137 -8.00596 -7.96727 -5.86270 -3.51326 3.53852 3.58093 3.76482 4.52559 4.61793 4.71914 4.78354 4.87419 5.10297 5.23859 5.29947 5.47336 5.56755 5.65038 5.68517 5.83219 5.91961 6.00129 6.08358 6.13654 6.15157 6.25277 6.29232 6.45880 6.51295 6.68810 7.47952 7.82506 8.05555 8.50545 9.55295 10.15876 11.27012 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054203 B = 0.009214 C = 0.008243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.450923 B = 3038.002899 C = 3396.108167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.040 3.960 3 Si 0.912 3.088 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.352 4.352 8 H 0.074 0.926 9 O -0.318 6.318 10 C 0.095 3.905 11 C 0.082 3.918 12 H 0.078 0.922 13 C -0.144 4.144 14 C -0.118 4.118 15 C -0.122 4.122 16 C -0.152 4.152 17 C 0.057 3.943 18 N -0.652 5.652 19 H 0.267 0.733 20 H 0.027 0.973 21 H 0.027 0.973 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.045 -5.808 -1.162 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.156 4.156 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.430 4.430 8 H 0.092 0.908 9 O -0.233 6.233 10 C 0.017 3.983 11 C -0.027 4.027 12 H 0.096 0.904 13 C -0.183 4.183 14 C -0.156 4.156 15 C -0.160 4.160 16 C -0.192 4.192 17 C -0.074 4.074 18 N -0.280 5.280 19 H 0.076 0.924 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.633 -4.955 -1.049 17.387 hybrid contribution 0.834 -0.279 -0.041 0.881 sum 17.468 -5.234 -1.090 18.267 Atomic orbital electron populations 1.69702 1.05393 1.26983 1.54504 1.24296 0.94814 0.98262 0.98208 0.86061 0.79767 0.82025 0.78093 1.20857 1.22291 1.18965 1.20413 0.79077 0.94842 1.48670 0.90807 1.85297 1.19626 1.24660 1.93730 1.22052 0.90085 0.88062 0.98092 1.20510 0.95404 0.93741 0.93083 0.90384 1.21227 0.95182 0.98971 1.02953 1.21374 0.95382 1.01736 0.97081 1.21373 1.01000 0.96424 0.97180 1.22694 0.99943 0.95285 1.01246 1.21839 0.87125 0.97320 1.01110 1.60759 1.29507 1.32199 1.05568 0.92366 0.95534 0.95480 0.91172 0.91781 0.91654 0.91891 0.92436 0.92212 0.92136 0.92081 0.91973 0.91387 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.58 13.96 55.48 0.77 -28.80 16 2 C 0.04 1.25 5.49 -17.51 -0.10 1.16 16 3 Si 0.91 24.56 28.62 -169.99 -4.86 19.70 16 4 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.35 -10.82 10.35 30.88 0.32 -10.51 16 8 H 0.07 2.36 8.00 -52.49 -0.42 1.94 16 9 O -0.32 -8.75 8.52 -16.50 -0.14 -8.89 16 10 C 0.10 2.05 5.55 37.16 0.21 2.25 16 11 C 0.08 1.39 2.18 -70.59 -0.15 1.24 16 12 H 0.08 1.40 7.24 -51.93 -0.38 1.02 16 13 C -0.14 -1.88 4.52 -29.31 -0.13 -2.01 16 14 C -0.12 -1.28 5.60 -27.20 -0.15 -1.44 16 15 C -0.12 -1.25 5.28 -27.32 -0.14 -1.40 16 16 C -0.15 -1.64 5.92 -25.50 -0.15 -1.79 16 17 C 0.06 0.79 6.01 -4.75 -0.03 0.77 16 18 N -0.65 -10.91 6.38 -111.08 -0.71 -11.62 16 19 H 0.27 8.03 8.31 -40.82 -0.34 7.69 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 22 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 23 H 0.06 0.80 7.59 -51.93 -0.39 0.41 16 24 H 0.06 0.74 7.15 -51.93 -0.37 0.37 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.63 6.78 -51.93 -0.35 0.27 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.89 6.51 -51.93 -0.34 0.55 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.34 5.03 7.35 -39.29 -0.29 4.75 16 LS Contribution 253.61 15.07 3.82 3.82 Total: -1.00 -33.25 253.61 -6.50 -39.75 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.05 Total: -2.24 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.33 Total: -11.73 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.07 Total: -40.42 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.14 Total: -8.89 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -4.86 Total: 19.70 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.25 -6.50 -39.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.325 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds