Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48502 * 109.46907 * 270.00133 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99587 * 3 2 1 6 6 H 1.48496 * 109.47613 * 149.99480 * 3 2 1 7 7 C 1.38639 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00037 * 0.02562 * 7 2 1 9 9 O 1.34927 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.42900 * 117.00040 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47174 * 180.02562 * 10 9 7 12 12 H 1.09002 * 108.76231 * 55.00311 * 11 10 9 13 13 C 1.45861 * 108.79189 * 173.36729 * 11 10 9 14 14 C 1.54516 * 111.59642 * 182.09920 * 13 11 10 15 15 C 1.50471 * 108.84083 * 282.79100 * 14 13 11 16 16 C 1.54286 * 113.02595 * 92.15998 * 15 14 13 17 17 C 1.54064 * 112.29458 * 318.30165 * 16 15 14 18 18 N 1.44124 * 111.90406 * 318.94786 * 17 16 15 19 19 H 0.96996 * 120.00001 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47053 * 60.00796 * 10 9 7 21 21 H 1.09000 * 109.47168 * 300.01155 * 10 9 7 22 22 H 1.09004 * 109.05814 * 302.63804 * 13 11 10 23 23 H 1.08997 * 109.05957 * 61.55059 * 13 11 10 24 24 H 1.09000 * 109.57153 * 42.59607 * 14 13 11 25 25 H 1.09001 * 109.57523 * 162.85847 * 14 13 11 26 26 H 1.08996 * 108.76482 * 213.07546 * 15 14 13 27 27 H 1.08996 * 108.76926 * 331.24851 * 15 14 13 28 28 H 1.09002 * 108.91882 * 79.02593 * 16 15 14 29 29 H 1.09000 * 108.91593 * 197.57451 * 16 15 14 30 30 H 1.09003 * 108.97897 * 79.55692 * 17 16 15 31 31 H 1.09001 * 108.98451 * 198.35570 * 17 16 15 32 32 H 1.00905 * 111.07253 * 333.54734 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3583 -1.2006 0.0000 10 6 4.0070 -2.4739 0.0000 11 6 5.5238 -2.2734 0.0001 12 1 5.7938 -1.6406 0.8455 13 6 6.1694 -3.5716 0.1596 14 6 7.7076 -3.4382 0.2206 15 6 8.2321 -3.2202 -1.1727 16 6 8.3640 -1.7278 -1.5413 17 6 7.1622 -0.8967 -1.0527 18 7 5.9137 -1.5890 -1.2506 19 1 -0.4850 0.8400 -0.0004 20 1 3.7139 -3.0310 -0.8898 21 1 3.7144 -3.0308 0.8902 22 1 5.8155 -4.0342 1.0810 23 1 5.9006 -4.2087 -0.6830 24 1 7.9758 -2.5889 0.8489 25 1 8.1370 -4.3499 0.6360 26 1 9.2120 -3.6901 -1.2560 27 1 7.5552 -3.6979 -1.8810 28 1 9.2741 -1.3317 -1.0909 29 1 8.4395 -1.6368 -2.6248 30 1 7.2860 -0.6851 0.0094 31 1 7.1361 0.0450 -1.6009 32 1 5.9792 -2.2436 -2.0158 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259941455.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = -68.069737 kcal Electronic energy + Delta-G solvation = -13250.232607 eV Core-core repulsion = 11016.786913 eV Total energy + Delta-G solvation = -2233.445694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.49147 -38.12844 -34.47662 -33.76556 -33.63774 -28.64717 -26.67426 -25.87357 -23.74624 -22.00447 -20.55285 -19.66617 -17.57681 -16.95693 -16.43876 -16.19076 -15.62386 -15.22442 -15.03546 -14.66176 -14.01837 -13.76866 -13.56407 -13.25520 -13.13525 -12.79018 -12.20204 -12.05246 -11.75078 -11.63913 -11.45485 -11.40765 -11.34450 -11.11504 -10.31508 -9.19258 -8.24836 -5.92671 1.38580 1.44071 1.63430 2.47774 3.07632 3.31072 3.35053 3.86887 3.94500 4.02143 4.15585 4.28012 4.34805 4.50702 4.62752 4.74558 4.76693 4.81205 4.90656 5.01379 5.06684 5.19464 5.23240 5.27397 5.33672 5.43430 5.60112 6.16532 6.25476 6.65799 7.15547 7.91305 8.91567 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054203 B = 0.009214 C = 0.008243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.450923 B = 3038.002899 C = 3396.108167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.016 4.016 3 Si 0.982 3.018 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.356 4.356 8 H 0.045 0.955 9 O -0.333 6.333 10 C 0.084 3.916 11 C 0.099 3.901 12 H 0.066 0.934 13 C -0.141 4.141 14 C -0.111 4.111 15 C -0.122 4.122 16 C -0.143 4.143 17 C 0.056 3.944 18 N -0.678 5.678 19 H 0.273 0.727 20 H 0.024 0.976 21 H 0.030 0.970 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.391 -5.700 -1.314 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.209 4.209 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.435 4.435 8 H 0.063 0.937 9 O -0.249 6.249 10 C 0.006 3.994 11 C -0.011 4.011 12 H 0.085 0.915 13 C -0.180 4.180 14 C -0.149 4.149 15 C -0.159 4.159 16 C -0.182 4.182 17 C -0.075 4.075 18 N -0.308 5.308 19 H 0.082 0.918 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.996 -4.867 -1.203 19.646 hybrid contribution 0.081 -0.408 -0.002 0.416 sum 19.077 -5.275 -1.205 19.829 Atomic orbital electron populations 1.69804 1.06893 1.28303 1.55451 1.25182 0.95767 1.01951 0.97980 0.85015 0.78255 0.77688 0.78353 1.20203 1.20667 1.19069 1.20425 0.80623 0.93979 1.48428 0.93727 1.85244 1.17735 1.28093 1.93841 1.22482 0.92888 0.85973 0.98014 1.20346 0.92059 0.95719 0.92996 0.91550 1.21165 0.96870 0.96565 1.03418 1.21339 0.93224 1.02648 0.97670 1.21380 1.02049 0.95937 0.96570 1.22579 0.98680 0.95271 1.01667 1.21829 0.87401 0.97401 1.00824 1.60659 1.31624 1.32851 1.05708 0.91817 0.95740 0.95203 0.90777 0.91166 0.92006 0.89850 0.90410 0.92429 0.90678 0.91401 0.92551 0.92130 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.23 13.96 21.61 0.30 -61.93 16 2 C -0.02 -1.03 5.49 84.83 0.47 -0.56 16 3 Si 0.98 50.75 28.62 68.60 1.96 52.71 16 4 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.36 -22.36 10.35 67.92 0.70 -21.65 16 8 H 0.04 2.98 8.00 -2.91 -0.02 2.95 16 9 O -0.33 -18.50 8.52 -81.96 -0.70 -19.19 16 10 C 0.08 3.62 5.55 71.98 0.40 4.02 16 11 C 0.10 3.25 2.18 42.55 0.09 3.34 16 12 H 0.07 2.33 7.24 -2.39 -0.02 2.32 16 13 C -0.14 -3.40 4.52 28.92 0.13 -3.27 16 14 C -0.11 -2.08 5.60 30.29 0.17 -1.91 16 15 C -0.12 -2.08 5.28 30.21 0.16 -1.92 16 16 C -0.14 -2.67 5.92 31.39 0.19 -2.48 16 17 C 0.06 1.47 6.01 87.18 0.52 1.99 16 18 N -0.68 -21.98 6.38 -505.34 -3.22 -25.20 16 19 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 20 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.03 1.26 8.06 -2.39 -0.02 1.24 16 22 H 0.07 1.73 8.06 -2.38 -0.02 1.71 16 23 H 0.07 1.62 7.59 -2.39 -0.02 1.60 16 24 H 0.06 1.22 7.15 -2.39 -0.02 1.20 16 25 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.03 6.78 -2.39 -0.02 1.01 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.53 6.51 -2.39 -0.02 1.51 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.34 9.86 7.35 -89.69 -0.66 9.20 16 Total: -1.00 -71.01 253.61 1.60 -69.41 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.43 Total: 6.64 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 2.83 Total: -22.44 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -2.92 Total: -87.13 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.70 Total: -19.19 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 1.96 Total: 52.71 kcal Total: -71.01 1.60 -69.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941455.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.340 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds