Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00099 * 3 2 1 5 5 H 1.48494 * 109.46800 * 210.00147 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99849 * 3 2 1 7 7 C 1.38635 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99955 * 359.97438 * 7 2 1 9 9 O 1.34924 * 119.99732 * 180.02562 * 7 2 1 10 10 C 1.42903 * 116.99456 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.08997 * 108.92190 * 56.28889 * 11 10 9 13 13 C 1.45882 * 108.94330 * 174.99979 * 11 10 9 14 14 C 1.54304 * 112.18773 * 181.81712 * 13 11 10 15 15 C 1.50441 * 108.49835 * 281.45510 * 14 13 11 16 16 N 1.48004 * 112.81951 * 93.73239 * 15 14 13 17 17 C 1.48001 * 114.63439 * 318.09230 * 16 15 14 18 18 C 1.50455 * 112.82533 * 318.08923 * 17 16 15 19 19 H 0.97001 * 119.99805 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47467 * 299.99597 * 10 9 7 21 21 H 1.08998 * 109.47526 * 59.99870 * 10 9 7 22 22 H 1.09004 * 108.93139 * 302.51336 * 13 11 10 23 23 H 1.09001 * 108.93415 * 61.11394 * 13 11 10 24 24 H 1.08997 * 109.63268 * 41.16559 * 14 13 11 25 25 H 1.09010 * 109.62921 * 161.55831 * 14 13 11 26 26 H 1.08999 * 108.81421 * 214.58781 * 15 14 13 27 27 H 1.09002 * 108.81510 * 332.98214 * 15 14 13 28 28 H 1.00901 * 110.99943 * 84.83912 * 16 15 14 29 29 H 1.08992 * 108.81047 * 78.94905 * 17 16 15 30 30 H 1.08994 * 108.81526 * 197.34151 * 17 16 15 31 31 H 1.08996 * 109.63352 * 334.03353 * 18 17 16 32 32 H 1.08996 * 109.62843 * 213.42890 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4974 2.0465 1.4001 5 1 3.5473 1.4402 -0.7001 6 1 1.4473 2.6527 -0.7001 7 6 2.0091 -1.2006 0.0005 8 1 1.4691 -2.1359 0.0014 9 8 3.3583 -1.2005 0.0011 10 6 4.0070 -2.4738 0.0010 11 6 5.5239 -2.2734 0.0010 12 1 5.7993 -1.6597 0.8587 13 6 6.1735 -3.5740 0.1212 14 6 7.7110 -3.4548 0.1740 15 6 8.2211 -3.2372 -1.2245 16 7 8.3888 -1.8050 -1.5579 17 6 7.2930 -0.9293 -1.0860 18 6 5.9315 -1.5358 -1.2917 19 1 -0.4850 0.8401 0.0004 20 1 3.7139 -3.0310 0.8908 21 1 3.7145 -3.0307 -0.8891 22 1 5.8248 -4.0606 1.0322 23 1 5.8953 -4.1888 -0.7348 24 1 7.9914 -2.6092 0.8019 25 1 8.1355 -4.3716 0.5833 26 1 9.1838 -3.7375 -1.3293 27 1 7.5167 -3.6803 -1.9285 28 1 9.2850 -1.4634 -1.2447 29 1 7.4331 -0.7327 -0.0232 30 1 7.3403 0.0156 -1.6271 31 1 5.9668 -2.2424 -2.1208 32 1 5.2090 -0.7488 -1.5078 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = -69.704413 kcal Electronic energy + Delta-G solvation = -13234.317929 eV Core-core repulsion = 11000.801350 eV Total energy + Delta-G solvation = -2233.516579 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36734 -38.23818 -34.93999 -33.93060 -33.01091 -28.78908 -26.81053 -25.80524 -23.82872 -21.43411 -20.75512 -19.73856 -17.62605 -17.41185 -16.66142 -16.09342 -15.68990 -15.26655 -14.77812 -14.55939 -14.10628 -13.87546 -13.49078 -13.34982 -13.13451 -12.83047 -12.18893 -12.01303 -11.85435 -11.72229 -11.59247 -11.40814 -11.34709 -11.06200 -10.38400 -9.23298 -8.29911 -6.00400 1.36248 1.40023 1.59000 2.42091 3.02473 3.22113 3.31029 3.69777 3.94264 4.01915 4.19386 4.30103 4.41108 4.48727 4.58361 4.71140 4.77209 4.83949 4.91092 5.03933 5.05700 5.16239 5.21171 5.32865 5.42800 5.45925 5.57407 6.11436 6.16619 6.60633 7.09093 7.79096 8.86180 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054276 B = 0.009090 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.760589 B = 3079.506717 C = 3441.841066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.015 4.015 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.279 1.279 7 C -0.362 4.362 8 H 0.045 0.955 9 O -0.343 6.343 10 C 0.079 3.921 11 C -0.075 4.075 12 H 0.063 0.937 13 C -0.111 4.111 14 C -0.138 4.138 15 C 0.061 3.939 16 N -0.707 5.707 17 C 0.072 3.928 18 C -0.109 4.109 19 H 0.275 0.725 20 H 0.027 0.973 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.352 0.648 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.740 -4.749 -0.643 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.208 4.208 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.204 1.204 7 C -0.440 4.440 8 H 0.063 0.937 9 O -0.259 6.259 10 C 0.002 3.998 11 C -0.093 4.093 12 H 0.081 0.919 13 C -0.148 4.148 14 C -0.177 4.177 15 C -0.068 4.068 16 N -0.340 5.340 17 C -0.056 4.056 18 C -0.147 4.147 19 H 0.084 0.916 20 H 0.045 0.955 21 H 0.044 0.956 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.170 0.830 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.445 -4.575 -1.237 19.044 hybrid contribution -0.512 0.337 1.011 1.182 sum 17.933 -4.238 -0.226 18.429 Atomic orbital electron populations 1.69805 1.06988 1.28512 1.54810 1.25242 0.95828 1.02088 0.97632 0.85107 0.78720 0.77530 0.78643 1.19808 1.18322 1.20444 1.20368 0.80232 0.94121 1.49300 0.93698 1.85146 1.18309 1.28379 1.94061 1.22485 0.93176 0.85875 0.98267 1.20142 0.91905 0.98618 0.98654 0.91857 1.20518 0.96273 0.95475 1.02555 1.21887 0.94104 1.02973 0.98715 1.21781 1.02068 0.88352 0.94600 1.60154 1.05143 1.02437 1.66229 1.21468 0.90264 0.95865 0.98012 1.21316 0.96231 1.00059 0.97085 0.91642 0.95522 0.95605 0.91762 0.91611 0.92175 0.89119 0.89342 0.92160 0.82978 0.95021 0.91331 0.91193 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.97 21.61 0.30 -60.77 16 2 C -0.01 -0.91 5.49 84.82 0.47 -0.45 16 3 Si 0.98 48.52 28.62 68.60 1.96 50.48 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.36 -22.32 10.35 67.91 0.70 -21.62 16 8 H 0.05 2.97 8.00 -2.91 -0.02 2.94 16 9 O -0.34 -18.48 7.77 -81.93 -0.64 -19.12 16 10 C 0.08 3.37 5.32 71.98 0.38 3.76 16 11 C -0.07 -2.46 1.97 -12.53 -0.02 -2.49 16 12 H 0.06 2.15 7.51 -2.39 -0.02 2.14 16 13 C -0.11 -2.79 4.47 28.85 0.13 -2.66 16 14 C -0.14 -2.65 5.63 30.21 0.17 -2.48 16 15 C 0.06 1.16 6.01 85.26 0.51 1.67 16 16 N -0.71 -15.22 6.89 -517.46 -3.56 -18.78 16 17 C 0.07 1.92 6.01 85.27 0.51 2.43 16 18 C -0.11 -3.56 4.96 30.22 0.15 -3.41 16 19 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 20 H 0.03 1.13 8.09 -2.39 -0.02 1.11 16 21 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.57 8.09 -2.38 -0.02 1.55 16 23 H 0.07 1.63 7.52 -2.39 -0.02 1.61 16 24 H 0.06 1.22 7.08 -2.39 -0.02 1.20 16 25 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.30 6.58 -2.39 -0.02 1.29 16 28 H 0.35 5.96 8.91 -89.69 -0.80 5.16 16 29 H 0.03 0.82 6.58 -2.39 -0.02 0.81 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 2.21 7.07 -2.39 -0.02 2.20 16 32 H 0.05 2.08 7.31 -2.39 -0.02 2.07 16 Total: -1.00 -68.41 252.41 1.36 -67.06 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.29 Total: 6.37 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.00 Total: -25.24 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -3.26 Total: -79.55 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.64 Total: -19.12 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.96 Total: 50.48 kcal Total: -68.41 1.36 -67.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.649 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds