Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 H 1.09001 * 110.06260 * 302.97817 * 3 2 1 5 5 N 1.47900 * 109.91418 * 64.17949 * 3 2 1 6 6 C 1.46901 * 110.99708 * 265.19669 * 5 3 2 7 7 C 1.48537 * 105.81726 * 144.68353 * 5 3 2 8 8 C 1.54932 * 103.22584 * 320.79359 * 7 5 3 9 9 C 1.53995 * 109.91575 * 181.77120 * 3 2 1 10 10 O 1.42898 * 110.39142 * 120.46644 * 9 3 2 11 11 C 1.50696 * 110.31119 * 358.33861 * 9 3 2 12 12 H 1.08006 * 120.00130 * 3.94188 * 11 9 3 13 13 C 1.37873 * 119.99948 * 183.94512 * 11 9 3 14 14 N 1.31514 * 120.00224 * 3.91066 * 13 11 9 15 15 Si 1.86806 * 119.99840 * 183.90938 * 13 11 9 16 16 H 1.48504 * 109.46957 * 269.99796 * 15 13 11 17 17 H 1.48494 * 109.47305 * 29.99970 * 15 13 11 18 18 H 1.48496 * 109.46921 * 150.00191 * 15 13 11 19 19 H 1.09001 * 109.47297 * 52.36228 * 1 2 3 20 20 H 1.09011 * 109.46931 * 172.35949 * 1 2 3 21 21 H 1.08997 * 109.47159 * 292.35788 * 1 2 3 22 22 H 1.09005 * 109.47290 * 240.00168 * 2 1 3 23 23 H 1.08992 * 109.47692 * 120.00029 * 2 1 3 24 24 H 1.08997 * 109.47333 * 308.45138 * 6 5 3 25 25 H 1.08998 * 109.47423 * 68.46322 * 6 5 3 26 26 H 1.09001 * 109.46595 * 188.45863 * 6 5 3 27 27 H 1.08997 * 110.66493 * 202.35704 * 7 5 3 28 28 H 1.08999 * 110.80702 * 79.29881 * 7 5 3 29 29 H 1.09000 * 110.72306 * 279.05346 * 8 7 5 30 30 H 1.09002 * 110.72444 * 155.77160 * 8 7 5 31 31 H 0.96697 * 113.99922 * 173.30633 * 10 9 3 32 32 H 0.97003 * 119.99981 * 354.44100 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6392 1.9809 -0.8589 5 7 1.6368 2.1194 1.2517 6 6 0.3856 2.8664 1.0668 7 6 2.7562 3.0328 1.5967 8 6 4.0143 2.2038 1.2357 9 6 3.5792 1.4548 -0.0448 10 8 4.0381 2.1497 -1.2060 11 6 4.1140 0.0459 -0.0339 12 1 3.4319 -0.7909 -0.0628 13 6 5.4742 -0.1747 0.0131 14 7 6.3017 0.8412 0.1260 15 14 6.1416 -1.9168 -0.0836 16 1 6.2538 -2.4806 1.2857 17 1 5.2199 -2.7560 -0.8905 18 1 7.4819 -1.8985 -0.7226 19 1 -0.3634 0.6276 -0.8138 20 1 -0.3633 -1.0186 -0.1366 21 1 -0.3633 0.3909 0.9504 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 0.4744 3.5137 0.1943 25 1 -0.4368 2.1667 0.9180 26 1 0.1907 3.4733 1.9510 27 1 2.7445 3.2710 2.6602 28 1 2.7110 3.9434 0.9993 29 1 4.2536 1.4993 2.0322 30 1 4.8616 2.8581 1.0306 31 1 4.9961 2.2780 -1.2347 32 1 5.9619 1.7492 0.0951 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -43.459657 kcal Electronic energy + Delta-G solvation = -13956.657400 eV Core-core repulsion = 11724.278879 eV Total energy + Delta-G solvation = -2232.378521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.98568 -35.23476 -32.70024 -32.12120 -30.10602 -27.36972 -25.18785 -23.71092 -21.95974 -20.26420 -19.25736 -17.07918 -15.60719 -14.87993 -14.47516 -14.25403 -13.81528 -13.22032 -12.85701 -12.69433 -12.22062 -11.88266 -11.67098 -11.44603 -10.87072 -10.73743 -10.51852 -10.37240 -10.24230 -10.09753 -10.04607 -9.78542 -9.06669 -8.49189 -7.94634 -7.82071 -6.38608 -4.19207 3.40736 3.44397 3.59785 4.46272 4.60994 5.13468 5.47451 5.52268 5.73164 5.76849 5.84083 5.94635 6.01868 6.11728 6.12470 6.20890 6.28027 6.38054 6.57047 6.68053 6.84560 6.87212 7.14492 7.17874 7.26785 7.55369 7.76329 8.02861 8.36380 8.75215 9.07177 9.52489 10.90591 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039583 B = 0.014139 C = 0.011777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.205537 B = 1979.862772 C = 2377.010985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 C 0.091 3.909 4 H 0.041 0.959 5 N -0.513 5.513 6 C 0.012 3.988 7 C 0.033 3.967 8 C -0.135 4.135 9 C 0.226 3.774 10 O -0.593 6.593 11 C -0.609 4.609 12 H 0.073 0.927 13 C 0.025 3.975 14 N -0.914 5.914 15 Si 1.071 2.929 16 H -0.287 1.287 17 H -0.287 1.287 18 H -0.285 1.285 19 H 0.040 0.960 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.367 0.633 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.341 1.337 1.357 7.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.126 4.126 3 C -0.017 4.017 4 H 0.059 0.941 5 N -0.238 5.238 6 C -0.137 4.137 7 C -0.095 4.095 8 C -0.174 4.174 9 C 0.187 3.813 10 O -0.401 6.401 11 C -0.647 4.647 12 H 0.091 0.909 13 C -0.179 4.179 14 N -0.554 5.554 15 Si 0.900 3.100 16 H -0.214 1.214 17 H -0.213 1.213 18 H -0.211 1.211 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.215 0.785 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.716 0.086 1.699 6.928 hybrid contribution -0.696 1.673 -0.532 1.888 sum -7.412 1.759 1.167 7.707 Atomic orbital electron populations 1.22004 0.98193 1.00165 1.00816 1.21471 0.92500 0.95764 1.02876 1.22183 0.95488 0.94912 0.89094 0.94105 1.64684 1.02044 1.25546 1.31482 1.22654 0.94102 0.97464 0.99475 1.23226 0.92492 0.94351 0.99440 1.23278 0.94693 0.98159 1.01299 1.19687 0.89221 0.91063 0.81341 1.86290 1.27121 1.80059 1.46626 1.22787 0.94689 0.92239 1.54975 0.90877 1.25885 0.93669 1.05727 0.92594 1.70914 1.38140 0.99724 1.46659 0.83505 0.75771 0.73987 0.76780 1.21395 1.21343 1.21065 0.94124 0.93757 0.92574 0.91312 0.90647 0.96171 0.91107 0.92354 0.91475 0.94929 0.90575 0.92436 0.78465 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.62 37.16 0.32 -2.24 16 2 C -0.09 -1.82 4.11 -26.73 -0.11 -1.93 16 3 C 0.09 2.03 2.45 -66.64 -0.16 1.86 16 4 H 0.04 0.94 7.42 -51.93 -0.39 0.55 16 5 N -0.51 -10.26 5.01 -230.78 -1.16 -11.41 16 6 C 0.01 0.20 9.08 60.07 0.55 0.74 16 7 C 0.03 0.66 6.55 -1.90 -0.01 0.65 16 8 C -0.14 -3.18 5.03 -24.87 -0.13 -3.31 16 9 C 0.23 5.67 0.97 -90.42 -0.09 5.59 16 10 O -0.59 -15.47 12.93 -35.23 -0.46 -15.92 16 11 C -0.61 -16.40 7.24 -34.44 -0.25 -16.65 16 12 H 0.07 1.94 4.71 -52.48 -0.25 1.69 16 13 C 0.02 0.68 5.27 -17.82 -0.09 0.59 16 14 N -0.91 -25.88 13.00 55.43 0.72 -25.16 16 15 Si 1.07 24.55 29.91 -169.99 -5.08 19.47 16 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 20 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 21 H 0.06 0.90 6.30 -51.93 -0.33 0.57 16 22 H 0.07 1.49 7.02 -51.93 -0.36 1.13 16 23 H 0.07 1.65 7.21 -51.93 -0.37 1.28 16 24 H 0.02 0.33 7.86 -51.93 -0.41 -0.08 16 25 H 0.07 1.06 5.46 -51.93 -0.28 0.78 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 29 H 0.08 1.92 7.86 -51.93 -0.41 1.52 16 30 H 0.06 1.36 6.77 -51.93 -0.35 1.00 16 31 H 0.37 9.39 6.69 45.56 0.30 9.70 16 32 H 0.27 7.34 3.75 -40.82 -0.15 7.18 16 LS Contribution 243.08 15.07 3.66 3.66 Total: -1.00 -28.74 243.08 -6.19 -34.93 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -3.90 Total: 9.13 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 0.02 Total: -14.70 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.43 Total: -36.57 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.46 Total: -15.92 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.74 -6.19 -34.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.532 kcal (2) G-P(sol) polarization free energy of solvation -28.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds