Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47017 * 2 1 4 4 H 1.09001 * 110.06260 * 302.97817 * 3 2 1 5 5 N 1.47900 * 109.91418 * 64.17949 * 3 2 1 6 6 C 1.46901 * 110.99708 * 265.19669 * 5 3 2 7 7 C 1.48537 * 105.81726 * 144.68353 * 5 3 2 8 8 C 1.54932 * 103.22584 * 320.79359 * 7 5 3 9 9 C 1.53995 * 109.91575 * 181.77120 * 3 2 1 10 10 O 1.42898 * 110.39142 * 120.46644 * 9 3 2 11 11 C 1.50696 * 110.31119 * 358.33861 * 9 3 2 12 12 H 1.08006 * 120.00130 * 3.94188 * 11 9 3 13 13 C 1.37873 * 119.99948 * 183.94512 * 11 9 3 14 14 N 1.31514 * 120.00224 * 3.91066 * 13 11 9 15 15 Si 1.86806 * 119.99840 * 183.90938 * 13 11 9 16 16 H 1.48504 * 109.46957 * 269.99796 * 15 13 11 17 17 H 1.48494 * 109.47305 * 29.99970 * 15 13 11 18 18 H 1.48496 * 109.46921 * 150.00191 * 15 13 11 19 19 H 1.09001 * 109.47297 * 52.36228 * 1 2 3 20 20 H 1.09011 * 109.46931 * 172.35949 * 1 2 3 21 21 H 1.08997 * 109.47159 * 292.35788 * 1 2 3 22 22 H 1.09005 * 109.47290 * 240.00168 * 2 1 3 23 23 H 1.08992 * 109.47692 * 120.00029 * 2 1 3 24 24 H 1.08997 * 109.47333 * 308.45138 * 6 5 3 25 25 H 1.08998 * 109.47423 * 68.46322 * 6 5 3 26 26 H 1.09001 * 109.46595 * 188.45863 * 6 5 3 27 27 H 1.08997 * 110.66493 * 202.35704 * 7 5 3 28 28 H 1.08999 * 110.80702 * 79.29881 * 7 5 3 29 29 H 1.09000 * 110.72306 * 279.05346 * 8 7 5 30 30 H 1.09002 * 110.72444 * 155.77160 * 8 7 5 31 31 H 0.96697 * 113.99922 * 173.30633 * 10 9 3 32 32 H 0.97003 * 119.99981 * 354.44100 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6392 1.9809 -0.8589 5 7 1.6368 2.1194 1.2517 6 6 0.3856 2.8664 1.0668 7 6 2.7562 3.0328 1.5967 8 6 4.0143 2.2038 1.2357 9 6 3.5792 1.4548 -0.0448 10 8 4.0381 2.1497 -1.2060 11 6 4.1140 0.0459 -0.0339 12 1 3.4319 -0.7909 -0.0628 13 6 5.4742 -0.1747 0.0131 14 7 6.3017 0.8412 0.1260 15 14 6.1416 -1.9168 -0.0836 16 1 6.2538 -2.4806 1.2857 17 1 5.2199 -2.7560 -0.8905 18 1 7.4819 -1.8985 -0.7226 19 1 -0.3634 0.6276 -0.8138 20 1 -0.3633 -1.0186 -0.1366 21 1 -0.3633 0.3909 0.9504 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 0.4744 3.5137 0.1943 25 1 -0.4368 2.1667 0.9180 26 1 0.1907 3.4733 1.9510 27 1 2.7445 3.2710 2.6602 28 1 2.7110 3.9434 0.9993 29 1 4.2536 1.4993 2.0322 30 1 4.8616 2.8581 1.0306 31 1 4.9961 2.2780 -1.2347 32 1 5.9619 1.7492 0.0951 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -64.537129 kcal Electronic energy + Delta-G solvation = -13957.571388 eV Core-core repulsion = 11724.278879 eV Total energy + Delta-G solvation = -2233.292509 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.75116 -37.10130 -34.37591 -34.10528 -31.83263 -29.03892 -26.92370 -25.52431 -23.50650 -22.03897 -21.13970 -19.03542 -17.39372 -16.57773 -16.20787 -16.06252 -15.62768 -14.97847 -14.51560 -14.17729 -13.78435 -13.55592 -13.32655 -13.06803 -12.62708 -12.48528 -12.31870 -12.18617 -12.01762 -11.88867 -11.70114 -11.33691 -10.97961 -10.54294 -9.93030 -9.41002 -8.52530 -6.34215 1.54948 1.62169 1.79794 2.56400 2.97919 3.15458 3.64944 3.96505 4.07703 4.23778 4.29837 4.43925 4.51667 4.58743 4.61362 4.62659 4.73684 4.91348 5.02817 5.05502 5.19209 5.25337 5.29227 5.40205 5.60869 5.88420 6.01979 6.18043 6.25515 6.63777 7.02666 7.44364 8.77771 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039583 B = 0.014139 C = 0.011777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.205537 B = 1979.862772 C = 2377.010985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C 0.094 3.906 4 H 0.031 0.969 5 N -0.518 5.518 6 C 0.010 3.990 7 C 0.040 3.960 8 C -0.130 4.130 9 C 0.206 3.794 10 O -0.601 6.601 11 C -0.622 4.622 12 H 0.073 0.927 13 C -0.021 4.021 14 N -0.936 5.936 15 Si 1.113 2.887 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.286 1.286 19 H 0.049 0.951 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.019 0.981 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.364 0.636 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 1.128 1.859 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.014 4.014 4 H 0.049 0.951 5 N -0.242 5.242 6 C -0.138 4.138 7 C -0.087 4.087 8 C -0.169 4.169 9 C 0.167 3.833 10 O -0.409 6.409 11 C -0.660 4.660 12 H 0.091 0.909 13 C -0.219 4.219 14 N -0.578 5.578 15 Si 0.936 3.064 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.212 1.212 19 H 0.068 0.932 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.212 0.788 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.340 -0.110 2.206 8.628 hybrid contribution -0.217 1.778 -0.694 1.921 sum -8.557 1.668 1.512 8.848 Atomic orbital electron populations 1.21893 0.94644 1.01787 1.01727 1.21341 0.95575 0.94282 1.00993 1.22135 0.93298 0.96109 0.89875 0.95061 1.64706 1.03222 1.26273 1.30030 1.22774 0.92490 0.97844 1.00665 1.23197 0.90726 0.93822 1.01003 1.23062 0.96185 0.97823 0.99784 1.20012 0.91396 0.90433 0.81473 1.86279 1.26950 1.80177 1.47493 1.23125 0.94997 0.93417 1.54422 0.90919 1.27103 0.94387 1.08395 0.92041 1.70985 1.38550 0.99947 1.48281 0.82957 0.75331 0.70617 0.77458 1.20202 1.19891 1.21218 0.93203 0.91867 0.91569 0.93253 0.92462 0.96256 0.89521 0.89894 0.89047 0.94287 0.93046 0.93467 0.78805 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.62 71.98 0.62 -3.73 16 2 C -0.08 -3.38 4.11 30.59 0.13 -3.25 16 3 C 0.09 4.11 2.45 45.06 0.11 4.22 16 4 H 0.03 1.41 7.42 -2.39 -0.02 1.39 16 5 N -0.52 -19.62 5.01 -884.07 -4.43 -24.04 16 6 C 0.01 0.30 9.08 127.69 1.16 1.46 16 7 C 0.04 1.55 6.55 86.65 0.57 2.12 16 8 C -0.13 -6.14 5.03 31.80 0.16 -5.98 16 9 C 0.21 10.42 0.97 -10.66 -0.01 10.41 16 10 O -0.60 -31.89 12.93 -148.98 -1.93 -33.82 16 11 C -0.62 -33.89 7.24 25.60 0.19 -33.70 16 12 H 0.07 3.89 4.71 -2.91 -0.01 3.87 16 13 C -0.02 -1.13 5.27 84.65 0.45 -0.68 16 14 N -0.94 -53.91 13.00 21.45 0.28 -53.63 16 15 Si 1.11 49.47 29.91 68.60 2.05 51.52 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 19 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 20 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 21 H 0.07 1.88 6.30 -2.39 -0.02 1.86 16 22 H 0.05 2.14 7.02 -2.38 -0.02 2.12 16 23 H 0.06 2.48 7.21 -2.39 -0.02 2.47 16 24 H 0.02 0.57 7.86 -2.39 -0.02 0.55 16 25 H 0.09 2.27 5.46 -2.39 -0.01 2.25 16 26 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 27 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.04 1.46 8.02 -2.39 -0.02 1.44 16 29 H 0.05 2.64 7.86 -2.39 -0.02 2.62 16 30 H 0.05 2.28 6.77 -2.39 -0.02 2.26 16 31 H 0.36 19.22 6.69 -74.06 -0.50 18.73 16 32 H 0.26 14.81 3.75 -92.71 -0.35 14.46 16 Total: -1.00 -61.04 243.08 0.38 -60.66 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 1.03 Total: 28.44 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 3.36 Total: -29.13 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -4.15 Total: -77.67 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.93 Total: -33.82 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Total: -61.04 0.38 -60.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.879 kcal (2) G-P(sol) polarization free energy of solvation -61.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds