Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47225 * 2 1 4 4 H 1.08990 * 109.90480 * 56.05857 * 3 2 1 5 5 N 1.47901 * 109.91715 * 294.95168 * 3 2 1 6 6 C 1.46903 * 110.99908 * 94.80443 * 5 3 2 7 7 C 1.48534 * 105.82188 * 215.31987 * 5 3 2 8 8 C 1.54942 * 103.22664 * 39.20718 * 7 5 3 9 9 C 1.54001 * 109.91204 * 177.15957 * 3 2 1 10 10 O 1.42891 * 110.31060 * 1.66513 * 9 3 2 11 11 C 1.50702 * 110.30409 * 239.49168 * 9 3 2 12 12 H 1.07998 * 120.00304 * 0.02562 * 11 9 3 13 13 C 1.37875 * 119.99611 * 180.02562 * 11 9 3 14 14 N 1.31514 * 120.00188 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99994 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47071 * 90.00370 * 15 13 11 17 17 H 1.48500 * 109.47292 * 209.99944 * 15 13 11 18 18 H 1.48498 * 109.47086 * 330.00503 * 15 13 11 19 19 H 1.08993 * 109.47249 * 307.21477 * 1 2 3 20 20 H 1.09007 * 109.46477 * 67.20782 * 1 2 3 21 21 H 1.08998 * 109.47028 * 187.20663 * 1 2 3 22 22 H 1.08995 * 109.47071 * 120.00310 * 2 1 3 23 23 H 1.09009 * 109.47261 * 239.99696 * 2 1 3 24 24 H 1.09000 * 109.47022 * 65.66402 * 6 5 3 25 25 H 1.08996 * 109.46780 * 185.66310 * 6 5 3 26 26 H 1.09000 * 109.46570 * 305.66663 * 6 5 3 27 27 H 1.08997 * 110.67099 * 157.64482 * 7 5 3 28 28 H 1.09002 * 110.66501 * 280.77774 * 7 5 3 29 29 H 1.09001 * 110.72142 * 80.94812 * 8 7 5 30 30 H 1.08998 * 110.72150 * 204.05381 * 8 7 5 31 31 H 0.96705 * 114.00034 * 180.02562 * 10 9 3 32 32 H 0.97003 * 119.99985 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6243 1.9831 0.8502 5 7 1.6549 2.1131 -1.2608 6 6 0.4012 2.8611 -1.0975 7 6 2.7792 3.0247 -1.5944 8 6 4.0320 2.1974 -1.2113 9 6 3.5783 1.4549 0.0718 10 8 4.0853 0.1190 0.0786 11 6 4.0386 2.1966 1.3002 12 1 3.3131 2.6243 1.9763 13 6 5.3859 2.3292 1.5610 14 7 6.2694 1.8088 0.7375 15 14 5.9565 3.2492 3.0833 16 1 6.0839 2.2989 4.2173 17 1 7.2741 3.8798 2.8158 18 1 4.9653 4.3001 3.4272 19 1 -0.3633 0.6215 0.8183 20 1 -0.3632 0.3981 -0.9475 21 1 -0.3633 -1.0195 0.1289 22 1 1.8933 -0.5139 0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 0.5564 3.6819 -0.3973 25 1 0.0884 3.2607 -2.0621 26 1 -0.3712 2.1957 -0.7119 27 1 2.7827 3.2576 -2.6592 28 1 2.7241 3.9368 -1.0002 29 1 4.2826 1.4889 -2.0008 30 1 4.8772 2.8527 -1.0005 31 1 5.0498 0.0645 0.1232 32 1 7.2174 1.9023 0.9208 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = -72.097746 kcal Electronic energy + Delta-G solvation = -13869.751025 eV Core-core repulsion = 11636.130664 eV Total energy + Delta-G solvation = -2233.620362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37421 -36.64153 -34.36127 -33.78344 -31.67971 -28.94880 -27.45801 -25.28075 -23.27990 -21.89106 -20.58799 -18.93268 -17.07826 -16.76412 -16.21828 -15.76997 -15.53257 -14.71802 -14.19242 -14.14231 -13.69055 -13.39359 -13.23048 -12.98718 -12.88939 -12.66794 -12.37883 -12.26507 -12.07667 -11.78060 -11.58941 -11.26657 -10.85601 -10.58314 -10.06678 -9.27314 -8.22424 -6.40005 1.37443 1.39653 1.48516 2.35834 3.00549 3.23370 4.01054 4.05938 4.21132 4.34302 4.45042 4.57695 4.62632 4.68685 4.71983 4.78461 4.97834 5.11339 5.12808 5.26768 5.28260 5.38547 5.51971 5.58149 5.69000 5.78965 5.88760 6.28550 6.31055 6.66979 7.32176 7.51461 8.81483 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040623 B = 0.012605 C = 0.012118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.103206 B = 2220.773964 C = 2310.047005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C 0.084 3.916 4 H 0.035 0.965 5 N -0.520 5.520 6 C 0.009 3.991 7 C 0.045 3.955 8 C -0.124 4.124 9 C 0.234 3.766 10 O -0.590 6.590 11 C -0.558 4.558 12 H 0.047 0.953 13 C 0.030 3.970 14 N -0.910 5.910 15 Si 0.957 3.043 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.273 1.273 19 H 0.049 0.951 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.019 0.981 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.372 0.628 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 1.437 -2.199 7.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.025 4.025 4 H 0.053 0.947 5 N -0.245 5.245 6 C -0.139 4.139 7 C -0.082 4.082 8 C -0.163 4.163 9 C 0.194 3.806 10 O -0.398 6.398 11 C -0.596 4.596 12 H 0.066 0.934 13 C -0.170 4.170 14 N -0.550 5.550 15 Si 0.783 3.217 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.198 1.198 19 H 0.068 0.932 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.222 0.778 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.115 0.899 -2.677 8.592 hybrid contribution 1.492 1.249 1.515 2.466 sum -6.622 2.147 -1.162 7.058 Atomic orbital electron populations 1.21847 0.94600 1.01684 1.01711 1.21038 0.95783 0.94661 1.00683 1.22342 0.94497 0.95770 0.89865 0.94661 1.64710 1.03119 1.26642 1.30008 1.22762 0.92421 0.97054 1.01692 1.23082 0.90789 0.93987 1.00387 1.22926 0.96860 0.98765 0.97774 1.19648 0.89276 0.79972 0.91708 1.86124 1.26908 1.29692 1.97084 1.21957 0.92448 1.35922 1.09266 0.93433 1.25673 0.96599 0.95649 0.99100 1.69710 1.02055 1.45777 1.37446 0.85577 0.77646 0.78748 0.79760 1.20189 1.20343 1.19752 0.93163 0.91603 0.91984 0.93712 0.93138 0.96284 0.89858 0.89862 0.89388 0.94683 0.94133 0.92765 0.77812 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.51 71.98 0.61 -3.68 16 2 C -0.08 -3.35 4.66 30.59 0.14 -3.21 16 3 C 0.08 3.68 2.27 45.06 0.10 3.78 16 4 H 0.04 1.62 7.02 -2.39 -0.02 1.60 16 5 N -0.52 -20.07 5.02 -884.05 -4.44 -24.51 16 6 C 0.01 0.27 9.07 127.69 1.16 1.43 16 7 C 0.05 1.81 6.56 86.65 0.57 2.38 16 8 C -0.12 -5.99 5.93 31.95 0.19 -5.80 16 9 C 0.23 11.94 0.97 -10.51 -0.01 11.93 16 10 O -0.59 -31.63 11.18 -148.98 -1.67 -33.30 16 11 C -0.56 -30.56 8.22 25.60 0.21 -30.35 16 12 H 0.05 2.63 7.34 -2.91 -0.02 2.61 16 13 C 0.03 1.61 5.02 84.65 0.43 2.04 16 14 N -0.91 -49.27 10.43 21.45 0.22 -49.04 16 15 Si 0.96 42.57 29.54 68.60 2.03 44.59 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H 0.05 1.45 7.99 -2.39 -0.02 1.43 16 20 H 0.07 1.88 6.50 -2.38 -0.02 1.86 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 22 H 0.04 1.93 7.79 -2.39 -0.02 1.92 16 23 H 0.05 2.15 7.95 -2.38 -0.02 2.13 16 24 H 0.02 0.59 7.94 -2.39 -0.02 0.57 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.28 5.23 -2.39 -0.01 2.27 16 27 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.03 1.42 7.88 -2.39 -0.02 1.40 16 29 H 0.04 1.96 8.09 -2.39 -0.02 1.94 16 30 H 0.05 2.83 6.81 -2.39 -0.02 2.82 16 31 H 0.37 20.60 7.05 -74.05 -0.52 20.08 16 32 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -57.33 249.01 0.12 -57.21 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.57 Total: 26.53 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 3.40 Total: -21.48 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -4.22 Total: -73.55 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.67 Total: -33.30 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -57.33 0.12 -57.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.886 kcal (2) G-P(sol) polarization free energy of solvation -57.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds