Wall clock time and date at job start Mon Mar 30 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 H 1.08995 * 110.06477 * 303.78715 * 3 2 1 5 5 N 1.47898 * 109.91648 * 64.99207 * 3 2 1 6 6 C 1.46909 * 110.99759 * 265.19777 * 5 3 2 7 7 C 1.48534 * 105.82189 * 144.68094 * 5 3 2 8 8 C 1.54934 * 103.22433 * 320.79345 * 7 5 3 9 9 C 1.53995 * 109.91705 * 182.57990 * 3 2 1 10 10 O 1.42903 * 110.30594 * 358.34097 * 9 3 2 11 11 C 1.50702 * 110.39264 * 120.46139 * 9 3 2 12 12 H 1.08000 * 119.99911 * 358.56144 * 11 9 3 13 13 C 1.37875 * 120.00134 * 178.55339 * 11 9 3 14 14 N 1.31505 * 120.00047 * 180.02562 * 13 11 9 15 15 Si 1.86806 * 119.99830 * 0.02562 * 13 11 9 16 16 H 1.48501 * 109.47162 * 89.99776 * 15 13 11 17 17 H 1.48500 * 109.46789 * 209.99780 * 15 13 11 18 18 H 1.48496 * 109.47035 * 330.00161 * 15 13 11 19 19 H 1.09004 * 109.47678 * 172.58076 * 1 2 3 20 20 H 1.09003 * 109.47344 * 292.58262 * 1 2 3 21 21 H 1.08999 * 109.47589 * 52.58284 * 1 2 3 22 22 H 1.09004 * 109.47208 * 239.99952 * 2 1 3 23 23 H 1.09000 * 109.47401 * 120.00263 * 2 1 3 24 24 H 1.08996 * 109.47010 * 296.83034 * 6 5 3 25 25 H 1.08996 * 109.46811 * 56.83489 * 6 5 3 26 26 H 1.09002 * 109.46417 * 176.83321 * 6 5 3 27 27 H 1.09001 * 110.66906 * 202.35396 * 7 5 3 28 28 H 1.09001 * 110.80597 * 79.29253 * 7 5 3 29 29 H 1.08995 * 110.72271 * 279.05155 * 8 7 5 30 30 H 1.09001 * 110.87213 * 155.84130 * 8 7 5 31 31 H 0.96705 * 113.99235 * 182.83033 * 10 9 3 32 32 H 0.97010 * 119.99815 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9849 -0.8509 5 7 1.6537 2.1135 1.2602 6 6 0.4000 2.8614 1.0955 7 6 2.7776 3.0252 1.5945 8 6 4.0307 2.1979 1.2129 9 6 3.5785 1.4550 -0.0652 10 8 4.0856 0.1190 -0.0679 11 6 4.0461 2.1935 -1.2928 12 1 3.3246 2.6003 -1.9858 13 6 5.3951 2.3500 -1.5311 14 7 5.8031 2.9949 -2.6021 15 14 6.6431 1.6458 -0.3327 16 1 6.9861 0.2578 -0.7338 17 1 7.8697 2.4827 -0.3469 18 1 6.0655 1.6372 1.0353 19 1 -0.3634 -1.0191 -0.1327 20 1 -0.3634 0.3946 0.9489 21 1 -0.3634 0.6244 -0.8162 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.5439 3.6546 0.3618 25 1 -0.3834 2.1861 0.7517 26 1 0.1096 3.2985 2.0509 27 1 2.7801 3.2585 2.6593 28 1 2.7245 3.9386 1.0021 29 1 4.2805 1.4897 2.0028 30 1 4.8772 2.8509 1.0003 31 1 5.0511 0.0648 -0.0643 32 1 6.7522 3.1046 -2.7700 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:00 Heat of formation + Delta-G solvation = -32.235118 kcal Electronic energy + Delta-G solvation = -13949.867640 eV Core-core repulsion = 11717.975852 eV Total energy + Delta-G solvation = -2231.891788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99246 -35.24149 -32.74602 -32.25416 -30.36540 -27.35965 -26.09012 -23.54632 -21.80741 -20.65405 -19.08005 -16.91907 -15.75697 -15.37469 -14.60675 -14.40503 -13.67953 -13.18364 -12.99410 -12.52883 -12.48746 -12.05200 -11.85169 -11.67464 -11.41414 -11.23769 -10.55161 -10.46494 -10.14450 -10.04822 -9.88285 -9.64761 -9.08367 -8.74598 -8.45648 -7.79423 -6.26266 -4.30458 3.11820 3.19289 3.26018 4.20397 4.64023 4.92820 5.45321 5.51361 5.59414 5.73043 5.81940 5.89101 5.94810 6.01318 6.13236 6.20668 6.28050 6.46249 6.55273 6.61901 6.74296 6.78356 6.91571 7.05482 7.18224 7.31778 7.62273 7.75762 8.31269 8.75787 8.79181 9.33680 10.86404 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042587 B = 0.014049 C = 0.013253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.320126 B = 1992.568954 C = 2112.171741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C 0.091 3.909 4 H 0.057 0.943 5 N -0.519 5.519 6 C 0.010 3.990 7 C 0.043 3.957 8 C -0.152 4.152 9 C 0.215 3.785 10 O -0.569 6.569 11 C -0.533 4.533 12 H 0.078 0.922 13 C 0.077 3.923 14 N -0.887 5.887 15 Si 0.844 3.156 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.233 1.233 19 H 0.043 0.957 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.347 0.653 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -1.885 7.190 9.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 C -0.017 4.017 4 H 0.075 0.925 5 N -0.244 5.244 6 C -0.139 4.139 7 C -0.085 4.085 8 C -0.190 4.190 9 C 0.175 3.825 10 O -0.377 6.377 11 C -0.571 4.571 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.524 5.524 15 Si 0.671 3.329 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.157 1.157 19 H 0.062 0.938 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.196 0.804 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.490 -2.327 7.497 10.185 hybrid contribution 1.546 0.624 -0.254 1.686 sum -4.945 -1.703 7.242 8.933 Atomic orbital electron populations 1.21933 0.97649 1.00271 1.01033 1.21170 0.93304 0.95984 1.02502 1.22302 0.94591 0.94996 0.89792 0.92513 1.64711 1.02216 1.26142 1.31282 1.22650 0.93643 0.97318 1.00268 1.23053 0.91099 0.94888 0.99424 1.23653 0.96866 0.99328 0.99169 1.19946 0.90181 0.79895 0.92441 1.86497 1.23430 1.30430 1.97375 1.21491 0.93164 1.35332 1.07115 0.90429 1.25025 0.98432 0.94117 0.95114 1.69893 1.15734 1.40618 1.26187 0.87767 0.81585 0.79534 0.83981 1.19970 1.21427 1.15684 0.93803 0.92531 0.93700 0.91484 0.91626 0.95668 0.91131 0.92237 0.91523 0.93546 0.92467 0.90982 0.80430 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.52 37.15 0.32 -2.06 16 2 C -0.09 -1.77 4.66 -26.73 -0.12 -1.89 16 3 C 0.09 1.94 2.28 -66.64 -0.15 1.79 16 4 H 0.06 1.28 7.02 -51.93 -0.36 0.92 16 5 N -0.52 -9.86 5.02 -230.78 -1.16 -11.02 16 6 C 0.01 0.16 9.06 60.07 0.54 0.70 16 7 C 0.04 0.83 6.56 -1.90 -0.01 0.82 16 8 C -0.15 -3.31 4.22 -24.87 -0.11 -3.42 16 9 C 0.22 5.14 0.94 -90.42 -0.08 5.06 16 10 O -0.57 -13.66 11.14 -35.23 -0.39 -14.05 16 11 C -0.53 -14.79 8.84 -34.44 -0.30 -15.09 16 12 H 0.08 2.35 7.60 -52.49 -0.40 1.96 16 13 C 0.08 2.14 5.36 -17.82 -0.10 2.05 16 14 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 15 Si 0.84 19.69 23.20 -169.99 -3.94 15.75 16 16 H -0.27 -6.25 7.04 56.52 0.40 -5.85 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.23 -5.01 4.44 56.52 0.25 -4.76 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.06 0.85 6.47 -51.93 -0.34 0.51 16 21 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 22 H 0.07 1.37 7.80 -51.93 -0.41 0.97 16 23 H 0.06 1.31 7.94 -51.93 -0.41 0.90 16 24 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 25 H 0.07 1.03 5.24 -51.93 -0.27 0.76 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 29 H 0.06 1.20 7.83 -51.93 -0.41 0.80 16 30 H 0.07 1.62 5.13 -51.93 -0.27 1.36 16 31 H 0.35 8.01 4.55 45.56 0.21 8.22 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 238.60 15.07 3.60 3.60 Total: -1.00 -29.29 238.60 -5.60 -34.89 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.45 Total: 8.53 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.02 Total: -12.04 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.39 Total: -36.67 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.39 Total: -14.05 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -3.94 Total: 15.75 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.29 -5.60 -34.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.656 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds