Wall clock time and date at job start Mon Mar 30 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47044 * 2 1 4 4 N 1.46898 * 109.46953 * 180.02562 * 3 2 1 5 5 C 1.47015 * 110.99642 * 293.62955 * 4 3 2 6 6 C 1.53098 * 109.25723 * 177.60943 * 5 4 3 7 7 O 1.43023 * 109.25952 * 56.85124 * 6 5 4 8 8 C 1.43014 * 113.73189 * 301.32868 * 7 6 5 9 9 C 1.47016 * 110.99994 * 169.99953 * 4 3 2 10 10 H 1.08995 * 109.50491 * 62.44945 * 9 4 3 11 11 C 1.50695 * 109.50177 * 302.36765 * 9 4 3 12 12 H 1.07999 * 120.00513 * 359.97438 * 11 9 4 13 13 C 1.37886 * 119.99910 * 180.02562 * 11 9 4 14 14 N 1.31514 * 119.99486 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99950 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47197 * 60.00547 * 15 13 11 17 17 H 1.48507 * 109.47141 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47676 * 299.99783 * 15 13 11 19 19 H 1.08994 * 109.47742 * 300.00426 * 1 2 3 20 20 H 1.09000 * 109.46878 * 60.00356 * 1 2 3 21 21 H 1.08996 * 109.47139 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47742 * 239.99574 * 2 1 3 23 23 H 1.09009 * 109.47009 * 119.99428 * 2 1 3 24 24 H 1.08994 * 109.47199 * 59.99242 * 3 2 1 25 25 H 1.08996 * 109.46529 * 299.99637 * 3 2 1 26 26 H 1.08999 * 109.50673 * 297.54208 * 5 4 3 27 27 H 1.09004 * 109.50788 * 57.67624 * 5 4 3 28 28 H 1.08997 * 109.51060 * 296.91507 * 6 5 4 29 29 H 1.09000 * 109.51173 * 176.78603 * 6 5 4 30 30 H 1.08999 * 109.51224 * 298.73604 * 8 7 6 31 31 H 1.09000 * 109.50636 * 178.60446 * 8 7 6 32 32 H 0.97000 * 119.99653 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0362 0.8922 1.2565 6 6 5.5653 0.8554 1.1896 7 8 6.0578 2.1721 0.9263 8 6 5.5648 2.7383 -0.2910 9 6 4.0357 2.7942 -0.2390 10 1 3.7229 3.4546 0.5697 11 6 3.5055 3.3170 -1.5491 12 1 2.8438 2.7069 -2.1460 13 6 3.8661 4.5740 -1.9865 14 7 4.6723 5.3167 -1.2599 15 14 3.2094 5.2217 -3.6108 16 1 1.7261 5.2712 -3.5607 17 1 3.7419 6.5871 -3.8509 18 1 3.6378 4.3222 -4.7120 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6765 1.9564 0.8899 25 1 1.6766 1.9563 -0.8900 26 1 3.7235 1.5223 2.0892 27 1 3.6538 -0.1184 1.4002 28 1 5.8786 0.1832 0.3908 29 1 5.9630 0.5016 2.1408 30 1 5.8780 2.1208 -1.1328 31 1 5.9619 3.7463 -0.4106 32 1 4.9263 6.2008 -1.5677 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:10 Heat of formation + Delta-G solvation = -50.507476 kcal Electronic energy + Delta-G solvation = -13521.289125 eV Core-core repulsion = 11288.604988 eV Total energy + Delta-G solvation = -2232.684137 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.58936 -35.51496 -33.32680 -32.09585 -29.82422 -27.12077 -25.26278 -23.63973 -22.26236 -20.41473 -19.18598 -16.61999 -15.55834 -15.11674 -14.64040 -14.52643 -13.75202 -13.61506 -13.37014 -13.21340 -12.42694 -12.09337 -11.54250 -11.18628 -11.02310 -10.96042 -10.81248 -10.58871 -10.37102 -10.29425 -9.98720 -9.47140 -9.08394 -8.66885 -8.34697 -7.24222 -6.11278 -4.15330 3.28465 3.33285 3.35770 4.34144 4.80897 4.95815 5.23133 5.40772 5.48806 5.72274 5.77307 5.87184 5.96208 6.07889 6.16449 6.25135 6.38364 6.42869 6.46479 6.68939 6.72000 6.81242 6.98109 7.32435 7.54656 7.70521 7.91991 8.20149 8.23318 8.55506 8.91450 9.49692 10.96867 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.026383 B = 0.014464 C = 0.009797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.022511 B = 1935.334557 C = 2857.248409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.062 3.938 4 N -0.535 5.535 5 C 0.017 3.983 6 C 0.067 3.933 7 O -0.405 6.405 8 C 0.069 3.931 9 C 0.187 3.813 10 H 0.007 0.993 11 C -0.509 4.509 12 H 0.066 0.934 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.901 3.099 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.275 1.275 19 H 0.049 0.951 20 H 0.054 0.946 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.017 0.983 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.122 0.878 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 -7.594 2.551 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.066 4.066 4 N -0.260 5.260 5 C -0.112 4.112 6 C -0.011 4.011 7 O -0.324 6.324 8 C -0.007 4.007 9 C 0.081 3.919 10 H 0.025 0.975 11 C -0.547 4.547 12 H 0.085 0.915 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.729 3.271 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.106 0.894 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.140 0.860 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.955 -7.593 2.281 8.461 hybrid contribution -0.818 0.786 -0.333 1.182 sum -3.773 -6.806 1.947 8.022 Atomic orbital electron populations 1.21722 0.96450 1.00775 1.01671 1.21573 0.94652 0.98013 1.01678 1.22035 0.88369 0.94955 1.01223 1.62286 1.06832 1.26244 1.30642 1.22733 0.96535 0.99499 0.92394 1.22433 0.92546 0.86330 0.99741 1.87904 1.70502 1.29543 1.44452 1.23129 0.95569 0.99200 0.82805 1.19829 0.92134 0.83030 0.96916 0.97536 1.21036 1.29135 1.00035 1.04494 0.91542 1.24996 0.95076 0.96598 0.97552 1.69840 1.34655 1.10822 1.37893 0.86501 0.79157 0.77891 0.83555 1.20241 1.21226 1.20082 0.93217 0.92681 0.93306 0.91628 0.92940 0.96437 0.89385 0.95476 0.91356 0.93575 0.90420 0.94841 0.85999 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.93 5.87 -26.73 -0.16 -2.08 16 3 C 0.06 1.24 4.75 -3.82 -0.02 1.22 16 4 N -0.53 -11.88 4.53 -227.73 -1.03 -12.91 16 5 C 0.02 0.33 5.44 -3.71 -0.02 0.31 16 6 C 0.07 1.29 7.01 37.21 0.26 1.55 16 7 O -0.40 -9.52 10.83 -35.23 -0.38 -9.91 16 8 C 0.07 1.76 6.02 37.21 0.22 1.99 16 9 C 0.19 4.87 1.97 -68.75 -0.14 4.74 16 10 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 11 C -0.51 -13.84 7.80 -34.44 -0.27 -14.11 16 12 H 0.07 1.79 6.57 -52.49 -0.35 1.45 16 13 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 14 N -0.89 -25.28 11.37 55.43 0.63 -24.65 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.79 6.52 -51.92 -0.34 0.45 16 24 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 25 H 0.09 1.90 6.04 -51.93 -0.31 1.59 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.13 6.38 -51.93 -0.33 0.80 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.12 3.37 6.19 -51.93 -0.32 3.05 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 253.08 15.07 3.81 3.81 Total: -1.00 -28.51 253.08 -6.84 -35.35 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.01 Total: -1.24 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 0.16 Total: -6.47 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.40 Total: -37.57 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.38 Total: -9.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.51 -6.84 -35.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.158 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds