Wall clock time and date at job start Mon Mar 30 2020 02:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99968 * 2 1 4 4 H 1.48496 * 109.46919 * 270.00589 * 3 2 1 5 5 H 1.48497 * 109.46759 * 30.00411 * 3 2 1 6 6 H 1.48497 * 109.46894 * 150.00321 * 3 2 1 7 7 C 1.37879 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99349 * 185.48347 * 7 2 1 9 9 C 1.50694 * 120.00421 * 5.48362 * 7 2 1 10 10 H 1.09007 * 109.47287 * 355.77313 * 9 7 2 11 11 C 1.53004 * 109.47176 * 235.77947 * 9 7 2 12 12 N 1.46894 * 109.47306 * 64.16062 * 11 9 7 13 13 C 1.52991 * 109.47538 * 115.77449 * 9 7 2 14 14 C 1.53176 * 109.54928 * 179.97438 * 13 9 7 15 15 C 1.53088 * 109.16712 * 176.84538 * 14 13 9 16 16 O 1.42898 * 109.41618 * 302.39501 * 15 14 13 17 17 C 1.42904 * 114.09727 * 61.15741 * 16 15 14 18 18 C 1.53093 * 109.41514 * 298.84140 * 17 16 15 19 19 H 0.97003 * 119.99763 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46974 * 184.16453 * 11 9 7 21 21 H 1.09000 * 109.46705 * 304.16537 * 11 9 7 22 22 H 1.00903 * 111.00562 * 173.97738 * 12 11 9 23 23 H 1.00901 * 111.00191 * 297.93514 * 12 11 9 24 24 H 1.09003 * 109.61353 * 59.77728 * 13 9 7 25 25 H 1.09008 * 109.51924 * 56.94333 * 14 13 9 26 26 H 1.08997 * 109.57204 * 296.79263 * 14 13 9 27 27 H 1.09000 * 109.47580 * 62.37968 * 15 14 13 28 28 H 1.09002 * 109.48157 * 182.40968 * 15 14 13 29 29 H 1.08997 * 109.48159 * 178.85401 * 17 16 15 30 30 H 1.09000 * 109.47976 * 58.82711 * 17 16 15 31 31 H 1.08999 * 109.51596 * 297.69907 * 18 17 16 32 32 H 1.08997 * 109.52110 * 177.51955 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0808 -1.1962 0.0889 9 6 1.2562 -2.4961 -0.1258 10 1 0.1840 -2.3001 -0.1294 11 6 1.6052 -3.4009 1.0577 12 7 1.1350 -2.7807 2.3035 13 6 1.6524 -3.1885 -1.4313 14 6 0.8932 -4.5126 -1.5601 15 6 1.2358 -5.1598 -2.9045 16 8 0.9054 -4.2588 -3.9633 17 6 1.6202 -3.0221 -3.9215 18 6 1.2930 -2.2891 -2.6179 19 1 -0.4850 0.8401 0.0004 20 1 1.1224 -4.3696 0.9292 21 1 2.6857 -3.5367 1.1048 22 1 1.2650 -3.4017 3.0881 23 1 1.5934 -1.8961 2.4626 24 1 2.7251 -3.3822 -1.4319 25 1 -0.1793 -4.3240 -1.5095 26 1 1.1841 -5.1807 -0.7494 27 1 2.3017 -5.3851 -2.9382 28 1 0.6654 -6.0815 -3.0201 29 1 1.3269 -2.4038 -4.7698 30 1 2.6912 -3.2195 -3.9686 31 1 0.2287 -2.0555 -2.5888 32 1 1.8709 -1.3665 -2.5639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260408841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:06 Heat of formation + Delta-G solvation = -88.310622 kcal Electronic energy + Delta-G solvation = -13551.907737 eV Core-core repulsion = 11317.584333 eV Total energy + Delta-G solvation = -2234.323405 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.27850 -37.35688 -34.07586 -33.99204 -31.85572 -29.70845 -26.52791 -24.90676 -23.94416 -21.71322 -20.54527 -18.40790 -17.11222 -16.79357 -16.50163 -16.24612 -15.57277 -15.15265 -14.89596 -14.73165 -14.06411 -13.52383 -13.14674 -12.94711 -12.71245 -12.50585 -12.41690 -12.09177 -11.94563 -11.55822 -11.04732 -10.85393 -10.67875 -10.44264 -10.15912 -9.20416 -8.00262 -6.07300 1.40329 1.43799 1.50665 2.47122 3.07136 3.28555 3.98510 4.11315 4.17025 4.26597 4.38135 4.45140 4.63747 4.72727 4.76695 4.85001 4.91791 4.98886 5.11561 5.22964 5.43556 5.52160 5.57379 5.74477 5.79778 6.05428 6.36187 6.48387 6.63877 6.97400 7.15199 7.56757 9.07118 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032771 B = 0.013260 C = 0.010330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.217717 B = 2111.120137 C = 2709.938600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.032 3.968 3 Si 0.933 3.067 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.511 4.511 8 H 0.040 0.960 9 C 0.035 3.965 10 H 0.034 0.966 11 C 0.079 3.921 12 N -0.848 5.848 13 C -0.073 4.073 14 C -0.147 4.147 15 C 0.062 3.938 16 O -0.405 6.405 17 C 0.064 3.936 18 C -0.122 4.122 19 H 0.255 0.745 20 H 0.056 0.944 21 H 0.004 0.996 22 H 0.332 0.668 23 H 0.340 0.660 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 -7.460 -3.338 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.760 3.240 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.016 3.984 10 H 0.052 0.948 11 C -0.051 4.051 12 N -0.378 5.378 13 C -0.092 4.092 14 C -0.185 4.185 15 C -0.014 4.014 16 O -0.324 6.324 17 C -0.012 4.012 18 C -0.160 4.160 19 H 0.065 0.935 20 H 0.074 0.926 21 H 0.022 0.978 22 H 0.143 0.857 23 H 0.153 0.847 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.455 -7.372 -3.828 8.997 hybrid contribution 1.386 1.310 0.738 2.045 sum 4.841 -6.062 -3.090 8.351 Atomic orbital electron populations 1.70078 1.07082 1.26456 1.51396 1.25480 0.95138 1.01357 0.94812 0.85954 0.78968 0.81067 0.77968 1.20544 1.21684 1.19463 1.21131 0.92283 0.91830 1.49648 0.94166 1.18922 0.97689 0.92309 0.89447 0.94783 1.21827 0.94857 0.96612 0.91839 1.58549 1.66696 1.07985 1.04547 1.21181 0.97937 0.93757 0.96362 1.22289 1.00112 0.97619 0.98473 1.22715 1.00617 0.92365 0.85728 1.87820 1.66887 1.28108 1.49628 1.22673 0.95930 0.84952 0.97633 1.21853 1.00134 0.99001 0.95044 0.93537 0.92587 0.97775 0.85663 0.84747 0.93032 0.93529 0.90110 0.92202 0.87374 0.88519 0.92258 0.94852 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.75 12.62 21.45 0.27 -52.48 16 2 C 0.03 1.72 5.45 84.65 0.46 2.18 16 3 Si 0.93 42.94 29.54 68.60 2.03 44.96 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.51 -26.59 6.24 25.60 0.16 -26.43 16 8 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16 9 C 0.04 1.70 1.91 -11.54 -0.02 1.68 16 10 H 0.03 1.94 6.92 -2.38 -0.02 1.92 16 11 C 0.08 3.31 5.99 86.31 0.52 3.83 16 12 N -0.85 -35.13 9.56 -186.73 -1.79 -36.91 16 13 C -0.07 -2.98 1.85 -10.68 -0.02 -3.00 16 14 C -0.15 -5.07 4.97 30.68 0.15 -4.92 16 15 C 0.06 1.80 6.84 72.01 0.49 2.29 16 16 O -0.41 -13.82 10.77 -148.98 -1.60 -15.42 16 17 C 0.06 2.15 6.84 72.01 0.49 2.65 16 18 C -0.12 -5.12 5.12 30.68 0.16 -4.96 16 19 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 20 H 0.06 2.12 6.29 -2.39 -0.02 2.10 16 21 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 22 H 0.33 11.13 9.08 -89.69 -0.81 10.32 16 23 H 0.34 15.01 8.21 -89.69 -0.74 14.27 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.08 2.48 6.53 -2.39 -0.02 2.46 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 2.61 7.36 -2.39 -0.02 2.59 16 Total: -1.00 -59.90 254.68 0.86 -59.05 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.44 Total: 27.49 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 2.39 Total: -26.69 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -1.52 Total: -89.39 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -1.60 Total: -15.42 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -59.90 0.86 -59.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.261 kcal (2) G-P(sol) polarization free energy of solvation -59.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds