Wall clock time and date at job start Mon Mar 30 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48530 * 111.00024 * 2 1 4 4 C 1.54943 * 103.23039 * 159.71921 * 3 2 1 5 5 C 1.54605 * 102.91757 * 322.58364 * 4 3 2 6 6 O 1.42894 * 110.30765 * 263.04207 * 5 4 3 7 7 C 1.50697 * 110.39002 * 140.91767 * 5 4 3 8 8 H 1.08000 * 119.99714 * 244.23848 * 7 5 4 9 9 C 1.37875 * 120.00152 * 64.23355 * 7 5 4 10 10 N 1.31512 * 119.99909 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00120 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47480 * 89.99808 * 11 9 7 13 13 H 1.48499 * 109.47492 * 210.00279 * 11 9 7 14 14 H 1.48503 * 109.47048 * 329.99948 * 11 9 7 15 15 C 1.47907 * 111.00021 * 117.39086 * 2 1 3 16 16 C 1.53001 * 109.91547 * 333.51584 * 15 2 1 17 17 C 1.53005 * 109.91449 * 94.60334 * 15 2 1 18 18 H 1.09002 * 109.47401 * 302.60551 * 1 2 3 19 19 H 1.09001 * 109.46874 * 182.60564 * 1 2 3 20 20 H 1.09004 * 109.46970 * 62.60697 * 1 2 3 21 21 H 1.09002 * 110.66932 * 278.15594 * 3 2 1 22 22 H 1.09006 * 110.66862 * 41.28453 * 3 2 1 23 23 H 1.08996 * 110.72293 * 204.22766 * 4 3 2 24 24 H 1.08998 * 110.87695 * 81.01300 * 4 3 2 25 25 H 0.96704 * 114.00150 * 295.72087 * 6 5 4 26 26 H 0.97006 * 119.99881 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47685 * 61.44751 * 16 15 2 28 28 H 1.08997 * 109.47024 * 181.45141 * 16 15 2 29 29 H 1.08999 * 109.47071 * 301.44551 * 16 15 2 30 30 H 1.09007 * 109.46726 * 58.55079 * 17 15 2 31 31 H 1.08993 * 109.47008 * 178.54360 * 17 15 2 32 32 H 1.08994 * 109.47540 * 298.55325 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2107 0.5228 5 6 3.2982 0.1054 1.5932 6 8 3.1872 0.6865 2.8939 7 6 4.4713 -0.8392 1.5417 8 1 4.3197 -1.8743 1.2735 9 6 5.7381 -0.3819 1.8368 10 7 5.9228 0.8787 2.1627 11 14 7.1923 -1.5526 1.7722 12 1 7.7760 -1.5422 0.4067 13 1 8.2199 -1.1201 2.7531 14 1 6.7371 -2.9263 2.1054 15 6 1.9991 -0.6353 1.2260 16 6 0.9838 -0.5018 2.3628 17 6 2.2936 -2.1132 0.9616 18 1 -0.3634 0.5538 0.8657 19 1 -0.3633 -1.0266 0.0467 20 1 -0.3633 0.4728 -0.9125 21 1 2.0041 1.7977 -1.0095 22 1 1.4237 2.0205 0.6729 23 1 3.8122 2.1352 0.9716 24 1 4.1141 0.8848 -0.2771 25 1 3.9767 1.1667 3.1789 26 1 6.8141 1.2006 2.3700 27 1 0.0615 -1.0139 2.0885 28 1 1.3921 -0.9493 3.2690 29 1 0.7745 0.5530 2.5411 30 1 3.0125 -2.2003 0.1468 31 1 2.7078 -2.5678 1.8615 32 1 1.3707 -2.6244 0.6880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260524173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:31 Heat of formation + Delta-G solvation = -37.636267 kcal Electronic energy + Delta-G solvation = -14140.968985 eV Core-core repulsion = 11908.842985 eV Total energy + Delta-G solvation = -2232.126000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.11834 -34.77070 -32.05007 -31.55384 -30.16037 -26.76244 -25.61590 -24.01829 -23.01810 -20.12652 -17.82405 -16.59244 -15.15999 -14.97412 -14.73752 -13.89502 -13.75652 -12.80937 -12.74973 -12.01441 -11.84931 -11.81793 -11.55949 -11.17647 -10.87532 -10.83699 -10.54553 -10.42241 -10.36171 -10.17053 -9.95313 -9.53440 -8.92051 -8.47849 -7.97292 -7.65973 -6.13499 -4.18175 3.26991 3.34116 3.37649 4.37023 4.75196 5.13940 5.60491 5.67056 5.89943 6.00447 6.05204 6.17525 6.20365 6.27033 6.33430 6.39018 6.62241 6.68434 6.75934 6.79626 6.99974 7.15945 7.30487 7.47794 7.57718 7.76671 7.86040 7.99594 8.25336 8.82784 9.48816 9.60311 10.94413 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047389 B = 0.013647 C = 0.012801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.715610 B = 2051.285189 C = 2186.818688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.514 5.514 3 C 0.030 3.970 4 C -0.120 4.120 5 C 0.255 3.745 6 O -0.590 6.590 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.066 3.934 10 N -0.902 5.902 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.101 3.899 16 C -0.143 4.143 17 C -0.107 4.107 18 H 0.027 0.973 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.381 0.619 26 H 0.265 0.735 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 -0.800 -2.012 6.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.238 5.238 3 C -0.097 4.097 4 C -0.159 4.159 5 C 0.214 3.786 6 O -0.400 6.400 7 C -0.571 4.571 8 H 0.095 0.905 9 C -0.134 4.134 10 N -0.543 5.543 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 C 0.012 3.988 16 C -0.202 4.202 17 C -0.164 4.164 18 H 0.046 0.954 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.050 0.950 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.232 0.768 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.401 -1.239 -2.456 6.967 hybrid contribution 1.123 0.269 0.648 1.324 sum -5.278 -0.971 -1.807 5.663 Atomic orbital electron populations 1.22485 0.89993 1.00995 0.99748 1.64838 1.06345 1.15055 1.37535 1.23268 0.97942 0.89385 0.99151 1.22989 0.92425 1.00387 1.00055 1.19254 0.89976 0.88909 0.80429 1.86100 1.44258 1.74172 1.35452 1.22082 0.91527 0.97456 1.46084 0.90454 1.25042 0.98989 0.95129 0.94288 1.69641 1.22918 1.14090 1.47622 0.86512 0.81988 0.81233 0.77771 1.20649 1.21293 1.19804 1.21743 0.94746 0.95287 0.87059 1.22015 0.97490 1.00910 0.99776 1.21674 0.99105 0.93753 1.01918 0.95433 0.92119 0.92649 0.91884 0.95018 0.91873 0.91527 0.76784 0.92537 0.94469 0.92008 0.93220 0.91534 0.92214 0.95540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.31 60.07 0.50 0.78 16 2 N -0.51 -10.43 5.17 -223.15 -1.15 -11.58 16 3 C 0.03 0.62 6.55 -1.90 -0.01 0.61 16 4 C -0.12 -2.85 5.50 -24.86 -0.14 -2.99 16 5 C 0.25 6.32 0.96 -90.41 -0.09 6.23 16 6 O -0.59 -15.26 11.16 -35.23 -0.39 -15.65 16 7 C -0.53 -14.15 7.25 -34.44 -0.25 -14.40 16 8 H 0.08 2.02 4.71 -52.49 -0.25 1.77 16 9 C 0.07 1.76 5.26 -17.82 -0.09 1.67 16 10 N -0.90 -24.26 10.88 55.43 0.60 -23.66 16 11 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 15 C 0.10 2.20 0.89 -130.53 -0.12 2.08 16 16 C -0.14 -2.90 6.23 37.16 0.23 -2.67 16 17 C -0.11 -2.22 7.33 37.16 0.27 -1.95 16 18 H 0.03 0.45 6.29 -51.93 -0.33 0.13 16 19 H 0.06 0.95 7.74 -51.93 -0.40 0.55 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.03 0.64 7.96 -51.93 -0.41 0.22 16 23 H 0.06 1.55 8.05 -51.93 -0.42 1.13 16 24 H 0.07 1.68 7.86 -51.93 -0.41 1.27 16 25 H 0.38 10.15 7.05 45.56 0.32 10.47 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.04 0.65 6.62 -51.93 -0.34 0.31 16 28 H 0.06 1.30 7.89 -51.93 -0.41 0.89 16 29 H 0.05 1.03 7.35 -51.93 -0.38 0.65 16 30 H 0.07 1.45 6.97 -51.93 -0.36 1.09 16 31 H 0.06 1.27 7.28 -51.93 -0.38 0.89 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 244.86 15.07 3.69 3.69 Total: -1.00 -27.07 244.86 -6.14 -33.21 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.17 Total: 8.81 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 0.31 Total: -10.64 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.55 Total: -35.24 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.39 Total: -15.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.07 -6.14 -33.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260524173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.426 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds