Wall clock time and date at job start Mon Mar 30 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48530 * 111.00024 * 2 1 4 4 C 1.54943 * 103.23039 * 159.71921 * 3 2 1 5 5 C 1.54605 * 102.91757 * 322.58364 * 4 3 2 6 6 O 1.42894 * 110.30765 * 263.04207 * 5 4 3 7 7 C 1.50697 * 110.39002 * 140.91767 * 5 4 3 8 8 H 1.08000 * 119.99714 * 244.23848 * 7 5 4 9 9 C 1.37875 * 120.00152 * 64.23355 * 7 5 4 10 10 N 1.31512 * 119.99909 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00120 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47480 * 89.99808 * 11 9 7 13 13 H 1.48499 * 109.47492 * 210.00279 * 11 9 7 14 14 H 1.48503 * 109.47048 * 329.99948 * 11 9 7 15 15 C 1.47907 * 111.00021 * 117.39086 * 2 1 3 16 16 C 1.53001 * 109.91547 * 333.51584 * 15 2 1 17 17 C 1.53005 * 109.91449 * 94.60334 * 15 2 1 18 18 H 1.09002 * 109.47401 * 302.60551 * 1 2 3 19 19 H 1.09001 * 109.46874 * 182.60564 * 1 2 3 20 20 H 1.09004 * 109.46970 * 62.60697 * 1 2 3 21 21 H 1.09002 * 110.66932 * 278.15594 * 3 2 1 22 22 H 1.09006 * 110.66862 * 41.28453 * 3 2 1 23 23 H 1.08996 * 110.72293 * 204.22766 * 4 3 2 24 24 H 1.08998 * 110.87695 * 81.01300 * 4 3 2 25 25 H 0.96704 * 114.00150 * 295.72087 * 6 5 4 26 26 H 0.97006 * 119.99881 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47685 * 61.44751 * 16 15 2 28 28 H 1.08997 * 109.47024 * 181.45141 * 16 15 2 29 29 H 1.08999 * 109.47071 * 301.44551 * 16 15 2 30 30 H 1.09007 * 109.46726 * 58.55079 * 17 15 2 31 31 H 1.08993 * 109.47008 * 178.54360 * 17 15 2 32 32 H 1.08994 * 109.47540 * 298.55325 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2107 0.5228 5 6 3.2982 0.1054 1.5932 6 8 3.1872 0.6865 2.8939 7 6 4.4713 -0.8392 1.5417 8 1 4.3197 -1.8743 1.2735 9 6 5.7381 -0.3819 1.8368 10 7 5.9228 0.8787 2.1627 11 14 7.1923 -1.5526 1.7722 12 1 7.7760 -1.5422 0.4067 13 1 8.2199 -1.1201 2.7531 14 1 6.7371 -2.9263 2.1054 15 6 1.9991 -0.6353 1.2260 16 6 0.9838 -0.5018 2.3628 17 6 2.2936 -2.1132 0.9616 18 1 -0.3634 0.5538 0.8657 19 1 -0.3633 -1.0266 0.0467 20 1 -0.3633 0.4728 -0.9125 21 1 2.0041 1.7977 -1.0095 22 1 1.4237 2.0205 0.6729 23 1 3.8122 2.1352 0.9716 24 1 4.1141 0.8848 -0.2771 25 1 3.9767 1.1667 3.1789 26 1 6.8141 1.2006 2.3700 27 1 0.0615 -1.0139 2.0885 28 1 1.3921 -0.9493 3.2690 29 1 0.7745 0.5530 2.5411 30 1 3.0125 -2.2003 0.1468 31 1 2.7078 -2.5678 1.8615 32 1 1.3707 -2.6244 0.6880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260524173.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:31 Heat of formation + Delta-G solvation = -57.229107 kcal Electronic energy + Delta-G solvation = -14141.818594 eV Core-core repulsion = 11908.842985 eV Total energy + Delta-G solvation = -2232.975609 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.83387 -36.63529 -34.08635 -33.23621 -31.90027 -28.47511 -27.39254 -25.59804 -24.82059 -21.93781 -19.57349 -18.54056 -17.05313 -16.66003 -16.51148 -15.76206 -15.35254 -14.53540 -14.43996 -13.65223 -13.59478 -13.46000 -13.36242 -13.04260 -12.69638 -12.44999 -12.28240 -12.18106 -12.02625 -11.86696 -11.71494 -11.42335 -10.82009 -10.45197 -9.95434 -9.21767 -8.14779 -6.25590 1.41704 1.44049 1.52832 2.43004 3.08304 3.21771 3.86730 4.14663 4.31023 4.40877 4.41975 4.60315 4.67115 4.72511 4.75385 4.93560 4.97795 5.03875 5.07774 5.11636 5.32007 5.34983 5.56723 5.61756 5.69013 5.87011 6.10981 6.28698 6.38844 6.79192 7.43895 7.52777 8.91464 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047389 B = 0.013647 C = 0.012801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.715610 B = 2051.285189 C = 2186.818688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.522 5.522 3 C 0.040 3.960 4 C -0.116 4.116 5 C 0.237 3.763 6 O -0.595 6.595 7 C -0.552 4.552 8 H 0.077 0.923 9 C 0.023 3.977 10 N -0.921 5.921 11 Si 0.954 3.046 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.096 3.904 16 C -0.134 4.134 17 C -0.100 4.100 18 H 0.030 0.970 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.035 0.965 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.373 0.627 26 H 0.265 0.735 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.298 -1.527 -2.678 7.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.088 4.088 4 C -0.155 4.155 5 C 0.197 3.803 6 O -0.403 6.403 7 C -0.590 4.590 8 H 0.095 0.905 9 C -0.176 4.176 10 N -0.562 5.562 11 Si 0.780 3.220 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.194 1.194 15 C 0.007 3.993 16 C -0.192 4.192 17 C -0.158 4.158 18 H 0.049 0.951 19 H 0.094 0.906 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.223 0.777 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.615 -1.971 -3.128 8.466 hybrid contribution 1.474 0.510 0.844 1.773 sum -6.142 -1.462 -2.284 6.714 Atomic orbital electron populations 1.22602 0.87357 1.02345 1.01058 1.64842 1.08827 1.14445 1.36472 1.23187 0.95416 0.89995 1.00219 1.22802 0.94416 0.99138 0.99133 1.19536 0.91505 0.89229 0.80002 1.86102 1.43710 1.74149 1.36368 1.22412 0.92576 0.97882 1.46106 0.90490 1.25717 1.01225 0.96465 0.94189 1.69736 1.23248 1.15182 1.48027 0.85622 0.79171 0.79568 0.77632 1.20446 1.21125 1.19430 1.21740 0.93767 0.95488 0.88349 1.21917 0.98265 1.00534 0.98489 1.21564 1.00020 0.93413 1.00793 0.95147 0.90639 0.90433 0.89732 0.94631 0.93751 0.93766 0.77728 0.92595 0.91340 0.93581 0.94154 0.93078 0.93342 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.43 8.31 127.69 1.06 1.49 16 2 N -0.52 -19.87 5.17 -859.90 -4.45 -24.32 16 3 C 0.04 1.55 6.55 86.65 0.57 2.12 16 4 C -0.12 -5.56 5.50 31.80 0.17 -5.38 16 5 C 0.24 11.80 0.96 -10.66 -0.01 11.79 16 6 O -0.59 -31.13 11.16 -148.98 -1.66 -32.79 16 7 C -0.55 -29.46 7.25 25.60 0.19 -29.28 16 8 H 0.08 4.03 4.71 -2.91 -0.01 4.01 16 9 C 0.02 1.22 5.26 84.65 0.45 1.67 16 10 N -0.92 -50.30 10.88 21.45 0.23 -50.06 16 11 Si 0.95 42.90 29.54 68.60 2.03 44.92 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 C 0.10 4.04 0.89 3.67 0.00 4.04 16 16 C -0.13 -5.13 6.23 71.98 0.45 -4.68 16 17 C -0.10 -4.01 7.33 71.98 0.53 -3.48 16 18 H 0.03 0.89 6.29 -2.39 -0.02 0.87 16 19 H 0.07 2.01 7.74 -2.39 -0.02 1.99 16 20 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 21 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 22 H 0.04 1.37 7.96 -2.38 -0.02 1.35 16 23 H 0.04 2.23 8.05 -2.39 -0.02 2.21 16 24 H 0.04 2.26 7.86 -2.39 -0.02 2.24 16 25 H 0.37 20.40 7.05 -74.05 -0.52 19.88 16 26 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 27 H 0.07 2.17 6.62 -2.39 -0.02 2.15 16 28 H 0.05 1.88 7.89 -2.39 -0.02 1.87 16 29 H 0.04 1.60 7.35 -2.39 -0.02 1.58 16 30 H 0.05 2.17 6.97 -2.38 -0.02 2.15 16 31 H 0.05 2.01 7.28 -2.39 -0.02 1.99 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -56.80 244.86 0.13 -56.67 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.58 Total: 27.30 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.40 Total: -21.72 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -4.22 Total: -74.39 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.66 Total: -32.79 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -56.80 0.13 -56.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260524173.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.561 kcal (2) G-P(sol) polarization free energy of solvation -56.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds