Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99540 * 2 1 4 4 H 1.48501 * 109.47093 * 270.00084 * 3 2 1 5 5 H 1.48504 * 109.47190 * 30.00253 * 3 2 1 6 6 H 1.48502 * 109.46987 * 150.00434 * 3 2 1 7 7 C 1.37871 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00142 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47052 * 300.00211 * 9 7 2 11 11 C 1.53004 * 109.47246 * 60.00195 * 9 7 2 12 12 N 1.46901 * 109.47077 * 65.17650 * 11 9 7 13 13 C 1.53005 * 109.47292 * 180.02562 * 9 7 2 14 14 H 1.09002 * 109.52220 * 301.67784 * 13 9 7 15 15 C 1.53177 * 109.51954 * 61.80227 * 13 9 7 16 16 C 1.53184 * 109.03228 * 176.82090 * 15 13 9 17 17 C 1.53090 * 109.21384 * 303.11772 * 16 15 13 18 18 O 1.42905 * 109.41637 * 57.57346 * 17 16 15 19 19 C 1.42896 * 114.09450 * 298.84011 * 18 17 16 20 20 H 0.96995 * 120.00586 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46647 * 305.17552 * 11 9 7 22 22 H 1.08995 * 109.46898 * 185.18028 * 11 9 7 23 23 H 1.00897 * 110.99945 * 173.80765 * 12 11 9 24 24 H 1.00909 * 110.99549 * 297.76230 * 12 11 9 25 25 H 1.08995 * 109.54782 * 296.75557 * 15 13 9 26 26 H 1.09005 * 109.54454 * 57.02175 * 15 13 9 27 27 H 1.08997 * 109.52962 * 183.17535 * 16 15 13 28 28 H 1.09003 * 109.51724 * 63.04997 * 16 15 13 29 29 H 1.09000 * 109.48280 * 297.58599 * 17 16 15 30 30 H 1.09004 * 109.47625 * 177.55305 * 17 16 15 31 31 H 1.09000 * 109.48275 * 301.17689 * 19 18 17 32 32 H 1.08999 * 109.47679 * 181.14058 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8897 11 6 0.3711 -2.5800 -1.2495 12 7 1.2221 -2.6267 -2.4460 13 6 2.2455 -3.6620 -0.0005 14 1 2.8923 -3.5883 -0.8748 15 6 3.0966 -3.6077 1.2719 16 6 4.0325 -4.8201 1.2990 17 6 3.1997 -6.1015 1.2097 18 8 2.4101 -6.0729 0.0189 19 6 1.4817 -4.9882 -0.0395 20 1 -0.4851 0.8400 0.0004 21 1 -0.2742 -1.7027 -1.2966 22 1 -0.2420 -3.4800 -1.2042 23 1 0.6703 -2.7816 -3.2764 24 1 1.7741 -1.7862 -2.5302 25 1 3.6859 -2.6908 1.2776 26 1 2.4466 -3.6304 2.1466 27 1 4.6022 -4.8199 2.2282 28 1 4.7170 -4.7708 0.4521 29 1 2.5450 -6.1709 2.0784 30 1 3.8637 -6.9656 1.1849 31 1 0.8045 -5.0429 0.8129 32 1 0.9081 -5.0502 -0.9643 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260536119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -86.798814 kcal Electronic energy + Delta-G solvation = -13596.830137 eV Core-core repulsion = 11362.572290 eV Total energy + Delta-G solvation = -2234.257848 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.31255 -37.34155 -34.23746 -33.85486 -32.11188 -28.90223 -26.62991 -25.19704 -24.26601 -21.49272 -20.46205 -18.26764 -17.23014 -16.83726 -16.40830 -16.35139 -15.48996 -15.20879 -14.61242 -14.47464 -14.21882 -13.42906 -13.24794 -13.00826 -12.82810 -12.41283 -12.35232 -12.08521 -11.94553 -11.63143 -11.11588 -10.92810 -10.74769 -10.45615 -10.07395 -9.16385 -8.03121 -6.15785 1.39713 1.42880 1.51091 2.43953 3.11492 3.21330 4.08426 4.13715 4.16299 4.20808 4.34088 4.48348 4.67408 4.77642 4.82818 4.93899 4.99010 5.08669 5.17324 5.28232 5.42744 5.50376 5.56291 5.64717 5.96678 6.01981 6.39248 6.45319 6.64920 6.85919 7.06098 7.50034 8.97604 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043019 B = 0.011502 C = 0.009954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.722445 B = 2433.749173 C = 2812.332601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.051 0.949 9 C 0.057 3.943 10 H -0.008 1.008 11 C 0.070 3.930 12 N -0.836 5.836 13 C -0.088 4.088 14 H 0.063 0.937 15 C -0.111 4.111 16 C -0.149 4.149 17 C 0.056 3.944 18 O -0.403 6.403 19 C 0.076 3.924 20 H 0.257 0.743 21 H 0.032 0.968 22 H 0.036 0.964 23 H 0.328 0.672 24 H 0.336 0.664 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.112 0.888 31 H 0.036 0.964 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -7.312 0.769 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.038 3.962 10 H 0.010 0.990 11 C -0.062 4.062 12 N -0.364 5.364 13 C -0.106 4.106 14 H 0.082 0.918 15 C -0.148 4.148 16 C -0.186 4.186 17 C -0.020 4.020 18 O -0.323 6.323 19 C -0.001 4.001 20 H 0.066 0.934 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.139 0.861 24 H 0.148 0.852 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.055 0.945 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.732 -7.965 0.995 9.318 hybrid contribution -0.524 2.330 -0.030 2.389 sum 4.208 -5.634 0.965 7.098 Atomic orbital electron populations 1.70014 1.06990 1.26704 1.52270 1.25633 0.95461 1.01841 0.95563 0.85748 0.78727 0.80236 0.78061 1.20278 1.21689 1.19631 1.21368 0.92755 0.91275 1.48672 0.93066 1.18615 0.92763 0.92514 0.92337 0.98964 1.21677 0.94888 0.97624 0.91965 1.58787 1.28468 1.44712 1.04463 1.21448 0.97550 0.94215 0.97430 0.91838 1.21552 0.97926 0.97935 0.97402 1.22182 0.98472 0.95079 1.02892 1.22737 0.93749 0.98334 0.87171 1.87836 1.53470 1.48924 1.42038 1.22602 0.90583 0.85947 1.00940 0.93384 0.95014 0.94598 0.86127 0.85183 0.92799 0.93597 0.89439 0.91852 0.93084 0.86973 0.94543 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 11.29 21.45 0.24 -51.33 16 2 C 0.01 0.68 5.29 84.65 0.45 1.13 16 3 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.50 -26.27 7.03 25.60 0.18 -26.09 16 8 H 0.05 2.69 6.84 -2.91 -0.02 2.67 16 9 C 0.06 2.74 1.72 -11.54 -0.02 2.72 16 10 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 11 C 0.07 3.20 5.74 86.30 0.50 3.70 16 12 N -0.84 -33.94 8.62 -186.71 -1.61 -35.55 16 13 C -0.09 -3.64 1.68 -10.70 -0.02 -3.66 16 14 H 0.06 2.84 7.53 -2.39 -0.02 2.82 16 15 C -0.11 -4.18 5.02 30.71 0.15 -4.03 16 16 C -0.15 -4.40 6.13 30.69 0.19 -4.21 16 17 C 0.06 1.59 6.84 72.01 0.49 2.08 16 18 O -0.40 -14.26 10.77 -148.98 -1.60 -15.87 16 19 C 0.08 2.86 5.66 72.01 0.41 3.27 16 20 H 0.26 13.93 8.31 -92.71 -0.77 13.15 16 21 H 0.03 1.67 5.95 -2.38 -0.01 1.65 16 22 H 0.04 1.54 6.76 -2.39 -0.02 1.53 16 23 H 0.33 11.49 9.08 -89.70 -0.81 10.68 16 24 H 0.34 14.49 8.25 -89.69 -0.74 13.75 16 25 H 0.05 2.19 6.85 -2.39 -0.02 2.18 16 26 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 3.37 6.67 -2.39 -0.02 3.35 16 Total: -1.00 -57.14 249.90 0.94 -56.19 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.44 Total: 26.86 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 2.33 Total: -25.09 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.37 Total: -86.88 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -1.60 Total: -15.87 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -57.14 0.94 -56.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.606 kcal (2) G-P(sol) polarization free energy of solvation -57.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds