Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47178 * 270.00015 * 3 2 1 5 5 H 1.48509 * 109.47281 * 29.99849 * 3 2 1 6 6 H 1.48506 * 109.47378 * 149.99570 * 3 2 1 7 7 C 1.37874 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99964 * 186.58967 * 7 2 1 9 9 C 1.50700 * 119.99914 * 6.58472 * 7 2 1 10 10 H 1.08997 * 109.47497 * 357.79142 * 9 7 2 11 11 C 1.53001 * 109.47358 * 237.78903 * 9 7 2 12 12 N 1.46899 * 109.46897 * 63.55443 * 11 9 7 13 13 C 1.53006 * 109.46766 * 117.79146 * 9 7 2 14 14 H 1.08997 * 109.52265 * 59.87686 * 13 9 7 15 15 C 1.53176 * 109.57335 * 299.71399 * 13 9 7 16 16 C 1.53177 * 109.03256 * 183.08386 * 15 13 9 17 17 C 1.53091 * 109.16457 * 56.98507 * 16 15 13 18 18 O 1.42904 * 109.41270 * 302.38555 * 17 16 15 19 19 C 1.42908 * 114.09406 * 61.16345 * 18 17 16 20 20 H 0.96996 * 119.99741 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47477 * 183.55519 * 11 9 7 22 22 H 1.08999 * 109.47128 * 303.55992 * 11 9 7 23 23 H 1.00898 * 110.99819 * 56.05167 * 12 11 9 24 24 H 1.00905 * 110.99832 * 180.02562 * 12 11 9 25 25 H 1.09003 * 109.54488 * 302.95037 * 15 13 9 26 26 H 1.08996 * 109.53927 * 63.22082 * 15 13 9 27 27 H 1.09006 * 109.52063 * 176.88564 * 16 15 13 28 28 H 1.09003 * 109.52654 * 297.07310 * 16 15 13 29 29 H 1.09005 * 109.48305 * 62.37084 * 17 16 15 30 30 H 1.09005 * 109.48006 * 182.39241 * 17 16 15 31 31 H 1.08999 * 109.47440 * 178.85724 * 19 18 17 32 32 H 1.08993 * 109.48511 * 58.82287 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1971 0.1079 9 6 1.2585 -2.4949 -0.1485 10 1 0.1883 -2.2957 -0.2043 11 6 1.5484 -3.3903 1.0577 12 7 1.0352 -2.7510 2.2766 13 6 1.7133 -3.1999 -1.4281 14 1 2.7839 -3.3976 -1.3742 15 6 1.4176 -2.3083 -2.6380 16 6 1.8063 -3.0567 -3.9168 17 6 1.0454 -4.3839 -3.9733 18 8 1.3411 -5.1511 -2.8045 19 6 0.9560 -4.5216 -1.5807 20 1 -0.4849 0.8400 -0.0004 21 1 1.0599 -4.3549 0.9200 22 1 2.6244 -3.5379 1.1504 23 1 0.0513 -2.5449 2.1900 24 1 1.2149 -3.3232 3.0881 25 1 0.3543 -2.0698 -2.6640 26 1 1.9974 -1.3884 -2.5634 27 1 1.5479 -2.4515 -4.7858 28 1 2.8788 -3.2514 -3.9133 29 1 -0.0258 -4.1873 -4.0178 30 1 1.3500 -4.9401 -4.8600 31 1 1.1964 -5.1771 -0.7436 32 1 -0.1163 -4.3268 -1.5938 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260536121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -66.053644 kcal Electronic energy + Delta-G solvation = -13550.745321 eV Core-core repulsion = 11317.387051 eV Total energy + Delta-G solvation = -2233.358270 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.82061 -35.48243 -32.71142 -31.94946 -30.83897 -27.09004 -24.89480 -23.38300 -22.61196 -19.85773 -19.01625 -16.54924 -15.67630 -15.28784 -14.59338 -14.46328 -13.99722 -13.60188 -13.08794 -12.97065 -12.25887 -11.93832 -11.82987 -11.52064 -10.85379 -10.65381 -10.56178 -10.40557 -10.23869 -9.79722 -9.48076 -9.23824 -8.87277 -8.55023 -8.32230 -7.44569 -5.89027 -3.84471 3.37228 3.44622 3.48882 4.40511 4.55191 5.38383 5.42899 5.52687 5.56315 5.71997 5.81318 5.92379 6.05703 6.12966 6.25908 6.36586 6.43425 6.50644 6.68465 6.77506 7.09936 7.15896 7.25867 7.41579 7.74350 7.87188 8.03202 8.26417 8.51162 8.57599 9.19282 9.74637 11.21430 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032982 B = 0.013222 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.733683 B = 2117.111441 C = 2707.098837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.477 4.477 8 H 0.047 0.953 9 C 0.035 3.965 10 H 0.068 0.932 11 C 0.074 3.926 12 N -0.827 5.827 13 C -0.106 4.106 14 H 0.057 0.943 15 C -0.096 4.096 16 C -0.159 4.159 17 C 0.064 3.936 18 O -0.395 6.395 19 C 0.060 3.940 20 H 0.256 0.744 21 H -0.011 1.011 22 H 0.047 0.953 23 H 0.337 0.663 24 H 0.313 0.687 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 -6.380 -4.090 7.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.016 3.984 10 H 0.086 0.914 11 C -0.056 4.056 12 N -0.355 5.355 13 C -0.125 4.125 14 H 0.075 0.925 15 C -0.134 4.134 16 C -0.196 4.196 17 C -0.013 4.013 18 O -0.315 6.315 19 C -0.016 4.016 20 H 0.066 0.934 21 H 0.007 0.993 22 H 0.066 0.934 23 H 0.150 0.850 24 H 0.123 0.877 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.835 -5.840 -4.263 7.278 hybrid contribution -0.244 0.454 0.116 0.528 sum 0.591 -5.386 -4.147 6.823 Atomic orbital electron populations 1.69880 1.05765 1.26023 1.51858 1.24798 0.94651 0.98586 0.94860 0.86758 0.80124 0.84307 0.77685 1.21092 1.21573 1.20103 1.20725 0.92810 0.89976 1.48001 0.93459 1.18988 0.99913 0.92827 0.86704 0.91402 1.22018 0.97802 0.93109 0.92701 1.58420 1.22627 1.50723 1.03688 1.21875 0.99190 0.93223 0.98250 0.92456 1.21386 1.01512 0.98788 0.91704 1.22279 1.00739 0.96902 0.99718 1.22472 0.98176 0.92572 0.88087 1.87822 1.84017 1.44991 1.14624 1.22920 0.97961 0.95528 0.85238 0.93384 0.99294 0.93401 0.84997 0.87738 0.92548 0.90579 0.92067 0.91857 0.93873 0.90164 0.89748 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 12.62 55.43 0.70 -24.48 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 3 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.48 -12.69 6.82 -34.44 -0.23 -12.92 16 8 H 0.05 1.30 7.82 -52.48 -0.41 0.89 16 9 C 0.03 0.82 1.86 -91.77 -0.17 0.65 16 10 H 0.07 1.78 6.93 -51.93 -0.36 1.42 16 11 C 0.07 1.58 5.93 -3.82 -0.02 1.55 16 12 N -0.83 -17.21 9.30 -10.37 -0.10 -17.30 16 13 C -0.11 -2.21 1.96 -90.48 -0.18 -2.39 16 14 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 15 C -0.10 -1.97 5.01 -26.55 -0.13 -2.11 16 16 C -0.16 -2.65 6.14 -26.59 -0.16 -2.81 16 17 C 0.06 1.01 6.84 37.20 0.25 1.26 16 18 O -0.40 -7.25 10.77 -35.23 -0.38 -7.63 16 19 C 0.06 1.12 5.71 37.21 0.21 1.33 16 20 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 21 H -0.01 -0.21 6.30 -51.93 -0.33 -0.53 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.34 7.11 8.99 -39.29 -0.35 6.75 16 24 H 0.31 5.43 9.08 -39.29 -0.36 5.07 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.08 1.71 7.36 -51.93 -0.38 1.33 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.50 6.49 -51.93 -0.34 1.16 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 255.67 15.07 3.85 3.85 Total: -1.00 -28.28 255.67 -6.52 -34.80 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.04 Total: 7.77 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.53 Total: -13.57 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.60 Total: -41.78 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.38 Total: -7.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.28 -6.52 -34.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.258 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds