Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47178 * 270.00015 * 3 2 1 5 5 H 1.48509 * 109.47281 * 29.99849 * 3 2 1 6 6 H 1.48506 * 109.47378 * 149.99570 * 3 2 1 7 7 C 1.37874 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99964 * 186.58967 * 7 2 1 9 9 C 1.50700 * 119.99914 * 6.58472 * 7 2 1 10 10 H 1.08997 * 109.47497 * 357.79142 * 9 7 2 11 11 C 1.53001 * 109.47358 * 237.78903 * 9 7 2 12 12 N 1.46899 * 109.46897 * 63.55443 * 11 9 7 13 13 C 1.53006 * 109.46766 * 117.79146 * 9 7 2 14 14 H 1.08997 * 109.52265 * 59.87686 * 13 9 7 15 15 C 1.53176 * 109.57335 * 299.71399 * 13 9 7 16 16 C 1.53177 * 109.03256 * 183.08386 * 15 13 9 17 17 C 1.53091 * 109.16457 * 56.98507 * 16 15 13 18 18 O 1.42904 * 109.41270 * 302.38555 * 17 16 15 19 19 C 1.42908 * 114.09406 * 61.16345 * 18 17 16 20 20 H 0.96996 * 119.99741 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47477 * 183.55519 * 11 9 7 22 22 H 1.08999 * 109.47128 * 303.55992 * 11 9 7 23 23 H 1.00898 * 110.99819 * 56.05167 * 12 11 9 24 24 H 1.00905 * 110.99832 * 180.02562 * 12 11 9 25 25 H 1.09003 * 109.54488 * 302.95037 * 15 13 9 26 26 H 1.08996 * 109.53927 * 63.22082 * 15 13 9 27 27 H 1.09006 * 109.52063 * 176.88564 * 16 15 13 28 28 H 1.09003 * 109.52654 * 297.07310 * 16 15 13 29 29 H 1.09005 * 109.48305 * 62.37084 * 17 16 15 30 30 H 1.09005 * 109.48006 * 182.39241 * 17 16 15 31 31 H 1.08999 * 109.47440 * 178.85724 * 19 18 17 32 32 H 1.08993 * 109.48511 * 58.82287 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0793 -1.1971 0.1079 9 6 1.2585 -2.4949 -0.1485 10 1 0.1883 -2.2957 -0.2043 11 6 1.5484 -3.3903 1.0577 12 7 1.0352 -2.7510 2.2766 13 6 1.7133 -3.1999 -1.4281 14 1 2.7839 -3.3976 -1.3742 15 6 1.4176 -2.3083 -2.6380 16 6 1.8063 -3.0567 -3.9168 17 6 1.0454 -4.3839 -3.9733 18 8 1.3411 -5.1511 -2.8045 19 6 0.9560 -4.5216 -1.5807 20 1 -0.4849 0.8400 -0.0004 21 1 1.0599 -4.3549 0.9200 22 1 2.6244 -3.5379 1.1504 23 1 0.0513 -2.5449 2.1900 24 1 1.2149 -3.3232 3.0881 25 1 0.3543 -2.0698 -2.6640 26 1 1.9974 -1.3884 -2.5634 27 1 1.5479 -2.4515 -4.7858 28 1 2.8788 -3.2514 -3.9133 29 1 -0.0258 -4.1873 -4.0178 30 1 1.3500 -4.9401 -4.8600 31 1 1.1964 -5.1771 -0.7436 32 1 -0.1163 -4.3268 -1.5938 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260536121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = -85.825873 kcal Electronic energy + Delta-G solvation = -13551.602709 eV Core-core repulsion = 11317.387051 eV Total energy + Delta-G solvation = -2234.215658 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32287 -37.19531 -34.29544 -33.92214 -32.37550 -28.87952 -26.59095 -25.12481 -24.11973 -21.50698 -20.70270 -18.53435 -17.14035 -16.78370 -16.45481 -16.19031 -15.54139 -15.21150 -14.70168 -14.60321 -13.96613 -13.77959 -13.38520 -13.11018 -12.77209 -12.50004 -12.37327 -12.03091 -11.87591 -11.45478 -11.11574 -10.95660 -10.81054 -10.38871 -10.15122 -9.09666 -7.97914 -5.97017 1.40886 1.44124 1.51650 2.51867 3.03894 3.34589 3.97113 4.10321 4.12403 4.22772 4.27997 4.46142 4.58720 4.64854 4.75436 4.83350 4.90863 5.00162 5.11066 5.18208 5.32860 5.49843 5.54517 5.73141 5.80086 5.98832 6.32281 6.48440 6.67441 6.97062 7.13358 7.63262 9.11205 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032982 B = 0.013222 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.733683 B = 2117.111441 C = 2707.098837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.031 3.969 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.480 4.480 8 H 0.032 0.968 9 C 0.036 3.964 10 H 0.039 0.961 11 C 0.079 3.921 12 N -0.842 5.842 13 C -0.102 4.102 14 H 0.050 0.950 15 C -0.094 4.094 16 C -0.151 4.151 17 C 0.059 3.941 18 O -0.402 6.402 19 C 0.070 3.930 20 H 0.254 0.746 21 H 0.015 0.985 22 H 0.044 0.956 23 H 0.335 0.665 24 H 0.333 0.667 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -7.354 -4.819 8.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.167 4.167 3 Si 0.758 3.242 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.519 4.519 8 H 0.050 0.950 9 C 0.017 3.983 10 H 0.057 0.943 11 C -0.052 4.052 12 N -0.371 5.371 13 C -0.122 4.122 14 H 0.068 0.932 15 C -0.132 4.132 16 C -0.189 4.189 17 C -0.017 4.017 18 O -0.321 6.321 19 C -0.007 4.007 20 H 0.063 0.937 21 H 0.033 0.967 22 H 0.062 0.938 23 H 0.147 0.853 24 H 0.145 0.855 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.208 -6.825 -4.990 8.541 hybrid contribution -0.335 0.744 0.339 0.884 sum 0.873 -6.081 -4.651 7.706 Atomic orbital electron populations 1.69982 1.06617 1.26263 1.53133 1.25317 0.95275 1.00950 0.95184 0.86009 0.78954 0.81534 0.77745 1.20522 1.21595 1.20248 1.20914 0.92164 0.91616 1.47183 0.94965 1.18912 0.97652 0.92597 0.89151 0.94274 1.21877 0.97793 0.93680 0.91827 1.58353 1.22485 1.51738 1.04509 1.21748 0.98891 0.94454 0.97091 0.93189 1.21293 0.99760 0.98182 0.93957 1.22226 1.01070 0.97382 0.98220 1.22710 0.98520 0.92180 0.88287 1.87819 1.84075 1.45294 1.14917 1.22745 0.97340 0.94302 0.86291 0.93667 0.96744 0.93771 0.85268 0.85478 0.94401 0.93434 0.89934 0.91547 0.93300 0.86747 0.88607 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 12.62 21.45 0.27 -52.07 16 2 C 0.03 1.68 5.45 84.65 0.46 2.14 16 3 Si 0.93 44.54 29.54 68.60 2.03 46.57 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.48 -25.80 6.82 25.60 0.17 -25.63 16 8 H 0.03 1.79 7.82 -2.91 -0.02 1.77 16 9 C 0.04 1.70 1.86 -11.54 -0.02 1.68 16 10 H 0.04 2.08 6.93 -2.39 -0.02 2.06 16 11 C 0.08 3.27 5.93 86.30 0.51 3.78 16 12 N -0.84 -34.31 9.30 -186.72 -1.74 -36.04 16 13 C -0.10 -4.21 1.96 -10.70 -0.02 -4.23 16 14 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.09 -3.84 5.01 30.71 0.15 -3.69 16 16 C -0.15 -4.73 6.14 30.68 0.19 -4.54 16 17 C 0.06 1.69 6.84 72.01 0.49 2.19 16 18 O -0.40 -13.64 10.77 -148.98 -1.60 -15.25 16 19 C 0.07 2.48 5.71 72.01 0.41 2.90 16 20 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 21 H 0.01 0.53 6.30 -2.39 -0.02 0.52 16 22 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.34 13.99 8.99 -89.70 -0.81 13.18 16 24 H 0.33 11.08 9.08 -89.69 -0.81 10.26 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 2.17 7.36 -2.39 -0.02 2.15 16 27 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.10 3.18 6.49 -2.39 -0.02 3.16 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -59.48 255.67 0.79 -58.68 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.51 Total: 23.52 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 2.35 Total: -25.40 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -1.47 Total: -88.12 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.60 Total: -15.25 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -59.48 0.79 -58.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260536121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.143 kcal (2) G-P(sol) polarization free energy of solvation -59.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds