Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00282 * 2 1 4 4 H 1.48496 * 109.46767 * 270.00005 * 3 2 1 5 5 H 1.48504 * 109.46753 * 29.99544 * 3 2 1 6 6 H 1.48497 * 109.47162 * 149.99617 * 3 2 1 7 7 C 1.37879 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99685 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99890 * 180.27825 * 7 2 1 10 10 C 1.53005 * 109.46811 * 179.72875 * 9 7 2 11 11 H 1.09000 * 110.64869 * 54.30091 * 10 9 7 12 12 C 1.54589 * 110.72428 * 291.14347 * 10 9 7 13 13 C 1.53996 * 105.14233 * 219.68675 * 12 10 9 14 14 N 1.47904 * 107.05685 * 358.77809 * 13 12 10 15 15 C 1.46894 * 110.99961 * 145.84305 * 14 13 12 16 16 C 1.52994 * 109.47199 * 183.59539 * 15 14 13 17 17 O 1.42893 * 109.47425 * 66.99940 * 16 15 14 18 18 C 1.48731 * 105.94389 * 25.20125 * 14 13 12 19 19 H 0.96994 * 119.99909 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47323 * 299.72185 * 9 7 2 21 21 H 1.08998 * 109.47274 * 59.72966 * 9 7 2 22 22 H 1.09002 * 110.31471 * 338.60410 * 12 10 9 23 23 H 1.09007 * 110.31034 * 100.77015 * 12 10 9 24 24 H 1.09000 * 109.91493 * 118.12716 * 13 12 10 25 25 H 1.09000 * 109.91908 * 239.22391 * 13 12 10 26 26 H 1.09002 * 109.47235 * 303.59602 * 15 14 13 27 27 H 1.09003 * 109.47220 * 63.59581 * 15 14 13 28 28 H 1.09005 * 109.47566 * 187.00236 * 16 15 14 29 29 H 1.09004 * 109.46856 * 307.00107 * 16 15 14 30 30 H 0.96698 * 114.00780 * 179.97438 * 17 16 15 31 31 H 1.08993 * 110.83648 * 202.57715 * 18 14 13 32 32 H 1.08998 * 110.58311 * 79.38092 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0069 10 6 4.0214 -2.6367 0.0130 11 1 3.5918 -3.1997 -0.8156 12 6 3.7063 -3.3225 1.3621 13 6 4.9535 -4.1661 1.6854 14 7 5.9011 -3.9870 0.5640 15 6 7.2906 -4.0127 1.0398 16 6 8.2357 -3.7356 -0.1309 17 8 8.0574 -2.3906 -0.5791 18 6 5.5694 -2.6712 -0.0449 19 1 -0.4850 0.8400 -0.0004 20 1 3.8786 -0.6828 -0.8831 21 1 3.8711 -0.6778 0.8969 22 1 3.5440 -2.5745 2.1381 23 1 2.8304 -3.9641 1.2649 24 1 5.4066 -3.8181 2.6137 25 1 4.6775 -5.2165 1.7781 26 1 7.4268 -3.2489 1.8054 27 1 7.5122 -4.9932 1.4614 28 1 9.2669 -3.8769 0.1931 29 1 8.0141 -4.4230 -0.9474 30 1 8.6263 -2.1444 -1.3212 31 1 5.9169 -2.6229 -1.0768 32 1 5.9946 -1.8584 0.5439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260785620.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -55.449337 kcal Electronic energy + Delta-G solvation = -13120.300608 eV Core-core repulsion = 10887.402176 eV Total energy + Delta-G solvation = -2232.898432 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.80471 -36.55228 -33.62729 -31.94613 -29.72575 -27.84262 -26.48337 -22.66588 -21.59260 -20.35395 -19.11033 -17.42862 -16.62356 -15.99922 -15.12670 -14.14070 -13.98794 -13.71062 -13.41867 -12.77682 -12.46499 -12.39378 -11.98648 -11.51802 -11.34302 -10.87443 -10.68148 -10.64654 -10.15761 -9.98569 -9.77629 -9.56755 -9.33630 -8.99383 -8.46860 -8.06020 -5.97747 -3.94480 3.35490 3.42449 3.47770 4.26799 4.34639 4.51422 5.03192 5.24331 5.30482 5.35909 5.40656 5.62524 5.63304 5.80026 5.87892 6.00676 6.11789 6.36094 6.56503 6.61854 6.87320 6.89455 6.94102 7.27353 7.39704 7.43315 7.57320 7.63097 7.87626 8.62507 9.08492 9.65595 11.15839 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046725 B = 0.009019 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.104254 B = 3103.648792 C = 3529.606442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.077 4.077 11 H 0.070 0.930 12 C -0.114 4.114 13 C 0.035 3.965 14 N -0.522 5.522 15 C 0.045 3.955 16 C 0.078 3.922 17 O -0.565 6.565 18 C 0.053 3.947 19 H 0.262 0.738 20 H 0.012 0.988 21 H 0.014 0.986 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.373 0.627 31 H 0.080 0.920 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.666 -6.629 1.033 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.042 4.042 10 C -0.097 4.097 11 H 0.089 0.911 12 C -0.152 4.152 13 C -0.093 4.093 14 N -0.247 5.247 15 C -0.084 4.084 16 C 0.000 4.000 17 O -0.370 6.370 18 C -0.074 4.074 19 H 0.071 0.929 20 H 0.030 0.970 21 H 0.032 0.968 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.219 0.781 31 H 0.098 0.902 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.036 -6.944 1.158 16.602 hybrid contribution 0.916 1.493 0.220 1.765 sum 15.951 -5.451 1.378 16.913 Atomic orbital electron populations 1.69919 1.06260 1.26714 1.51654 1.25032 0.94703 0.99080 0.94783 0.86804 0.80376 0.83781 0.78490 1.20331 1.21526 1.19061 1.21151 0.89476 0.94364 1.50091 0.90958 1.19586 0.97044 0.91464 0.96114 1.22045 0.92501 0.98492 0.96617 0.91104 1.22328 0.95951 0.98329 0.98635 1.22898 0.93941 1.00348 0.92111 1.64824 1.01224 1.32533 1.26122 1.22299 0.89892 1.00651 0.95525 1.22160 0.96968 0.83911 0.96918 1.86692 1.66106 1.29568 1.54675 1.23356 0.95915 0.88331 0.99754 0.92876 0.96986 0.96796 0.91371 0.91555 0.94678 0.91200 0.94366 0.90013 0.93796 0.92835 0.78057 0.90190 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.51 -14.90 9.29 -34.44 -0.32 -15.22 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 -0.11 3.45 -27.88 -0.10 -0.20 16 10 C -0.08 -1.64 3.00 -88.76 -0.27 -1.91 16 11 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 12 C -0.11 -2.22 6.13 -25.38 -0.16 -2.38 16 13 C 0.03 0.57 6.70 -2.75 -0.02 0.55 16 14 N -0.52 -8.54 5.34 -230.28 -1.23 -9.77 16 15 C 0.05 0.60 5.38 -3.83 -0.02 0.58 16 16 C 0.08 0.88 7.18 37.15 0.27 1.15 16 17 O -0.57 -7.11 10.44 -35.23 -0.37 -7.48 16 18 C 0.05 0.99 4.25 -1.78 -0.01 0.98 16 19 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 20 H 0.01 0.30 7.58 -51.93 -0.39 -0.10 16 21 H 0.01 0.35 7.07 -51.93 -0.37 -0.02 16 22 H 0.07 1.39 7.76 -51.93 -0.40 0.99 16 23 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 24 H 0.03 0.53 7.68 -51.93 -0.40 0.14 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.54 7.99 -51.93 -0.41 0.13 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.37 2.94 9.12 45.56 0.42 3.35 16 31 H 0.08 1.46 7.03 -51.93 -0.37 1.09 16 32 H 0.04 0.86 7.53 -51.93 -0.39 0.47 16 LS Contribution 255.72 15.07 3.85 3.85 Total: -1.00 -32.37 255.72 -6.80 -39.17 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.44 Total: -1.13 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.72 Total: -14.63 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.46 Total: -37.45 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.37 Total: -7.48 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.37 -6.80 -39.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260785620.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.282 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds