Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00282 * 2 1 4 4 H 1.48496 * 109.46767 * 270.00005 * 3 2 1 5 5 H 1.48504 * 109.46753 * 29.99544 * 3 2 1 6 6 H 1.48497 * 109.47162 * 149.99617 * 3 2 1 7 7 C 1.37879 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99685 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99890 * 180.27825 * 7 2 1 10 10 C 1.53005 * 109.46811 * 179.72875 * 9 7 2 11 11 H 1.09000 * 110.64869 * 54.30091 * 10 9 7 12 12 C 1.54589 * 110.72428 * 291.14347 * 10 9 7 13 13 C 1.53996 * 105.14233 * 219.68675 * 12 10 9 14 14 N 1.47904 * 107.05685 * 358.77809 * 13 12 10 15 15 C 1.46894 * 110.99961 * 145.84305 * 14 13 12 16 16 C 1.52994 * 109.47199 * 183.59539 * 15 14 13 17 17 O 1.42893 * 109.47425 * 66.99940 * 16 15 14 18 18 C 1.48731 * 105.94389 * 25.20125 * 14 13 12 19 19 H 0.96994 * 119.99909 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47323 * 299.72185 * 9 7 2 21 21 H 1.08998 * 109.47274 * 59.72966 * 9 7 2 22 22 H 1.09002 * 110.31471 * 338.60410 * 12 10 9 23 23 H 1.09007 * 110.31034 * 100.77015 * 12 10 9 24 24 H 1.09000 * 109.91493 * 118.12716 * 13 12 10 25 25 H 1.09000 * 109.91908 * 239.22391 * 13 12 10 26 26 H 1.09002 * 109.47235 * 303.59602 * 15 14 13 27 27 H 1.09003 * 109.47220 * 63.59581 * 15 14 13 28 28 H 1.09005 * 109.47566 * 187.00236 * 16 15 14 29 29 H 1.09004 * 109.46856 * 307.00107 * 16 15 14 30 30 H 0.96698 * 114.00780 * 179.97438 * 17 16 15 31 31 H 1.08993 * 110.83648 * 202.57715 * 18 14 13 32 32 H 1.08998 * 110.58311 * 79.38092 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0069 10 6 4.0214 -2.6367 0.0130 11 1 3.5918 -3.1997 -0.8156 12 6 3.7063 -3.3225 1.3621 13 6 4.9535 -4.1661 1.6854 14 7 5.9011 -3.9870 0.5640 15 6 7.2906 -4.0127 1.0398 16 6 8.2357 -3.7356 -0.1309 17 8 8.0574 -2.3906 -0.5791 18 6 5.5694 -2.6712 -0.0449 19 1 -0.4850 0.8400 -0.0004 20 1 3.8786 -0.6828 -0.8831 21 1 3.8711 -0.6778 0.8969 22 1 3.5440 -2.5745 2.1381 23 1 2.8304 -3.9641 1.2649 24 1 5.4066 -3.8181 2.6137 25 1 4.6775 -5.2165 1.7781 26 1 7.4268 -3.2489 1.8054 27 1 7.5122 -4.9932 1.4614 28 1 9.2669 -3.8769 0.1931 29 1 8.0141 -4.4230 -0.9474 30 1 8.6263 -2.1444 -1.3212 31 1 5.9169 -2.6229 -1.0768 32 1 5.9946 -1.8584 0.5439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260785620.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -80.875276 kcal Electronic energy + Delta-G solvation = -13121.403160 eV Core-core repulsion = 10887.402176 eV Total energy + Delta-G solvation = -2234.000984 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.14067 -37.58414 -35.46250 -33.79176 -31.27907 -29.25237 -28.11182 -24.37299 -23.00467 -21.64075 -20.80159 -18.87876 -18.29871 -17.26953 -16.67318 -15.99832 -15.24902 -15.00488 -14.76986 -14.36047 -14.12001 -13.92314 -13.63047 -13.24666 -12.74529 -12.65960 -12.19678 -11.95764 -11.75176 -11.68977 -11.41050 -11.28248 -11.07898 -10.75046 -10.70508 -9.34106 -8.28166 -6.30968 1.34546 1.35964 1.48511 2.36289 3.06503 3.10595 3.51724 3.87442 3.89713 4.13597 4.30565 4.40960 4.43539 4.58234 4.69044 4.79705 4.86877 4.92684 5.03104 5.05164 5.10107 5.22393 5.27941 5.45801 5.63942 5.68601 5.96724 6.19417 6.31844 6.76112 6.99055 7.32962 8.88676 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046725 B = 0.009019 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.104254 B = 3103.648792 C = 3529.606442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.252 1.252 7 C -0.522 4.522 8 H 0.033 0.967 9 C 0.002 3.998 10 C -0.082 4.082 11 H 0.056 0.944 12 C -0.116 4.116 13 C 0.043 3.957 14 N -0.527 5.527 15 C 0.039 3.961 16 C 0.079 3.921 17 O -0.592 6.592 18 C 0.072 3.928 19 H 0.266 0.734 20 H 0.015 0.985 21 H 0.013 0.987 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.392 0.608 31 H 0.083 0.917 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.266 -6.554 1.219 19.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.560 4.560 8 H 0.052 0.948 9 C -0.035 4.035 10 C -0.102 4.102 11 H 0.074 0.926 12 C -0.154 4.154 13 C -0.085 4.085 14 N -0.251 5.251 15 C -0.089 4.089 16 C 0.001 3.999 17 O -0.400 6.400 18 C -0.056 4.056 19 H 0.074 0.926 20 H 0.033 0.967 21 H 0.031 0.969 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.102 0.898 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 17.663 -6.886 1.334 19.005 hybrid contribution 0.058 1.388 0.157 1.398 sum 17.721 -5.498 1.491 18.614 Atomic orbital electron populations 1.70067 1.08170 1.28022 1.53012 1.25988 0.95600 1.03350 0.94349 0.85687 0.79338 0.78561 0.79245 1.19046 1.20830 1.17570 1.21423 0.91789 0.93041 1.49707 0.94823 1.19485 0.94086 0.94051 0.95925 1.21971 0.94939 0.96143 0.97120 0.92553 1.22280 0.97596 0.98275 0.97226 1.22852 0.92301 1.00711 0.92652 1.64839 1.03112 1.30743 1.26420 1.22517 0.88147 1.01917 0.96349 1.22213 0.97980 0.83405 0.96263 1.86618 1.67275 1.30301 1.55843 1.23081 0.93040 0.89342 1.00107 0.92565 0.96674 0.96881 0.92927 0.92547 0.93333 0.89293 0.95156 0.87446 0.90807 0.92597 0.75862 0.89823 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 45.91 27.47 68.60 1.88 47.80 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 7 C -0.52 -31.12 9.29 25.60 0.24 -30.88 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.17 16 9 C 0.00 0.11 3.45 29.85 0.10 0.22 16 10 C -0.08 -3.50 3.00 -9.59 -0.03 -3.53 16 11 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 12 C -0.12 -4.50 6.13 31.47 0.19 -4.31 16 13 C 0.04 1.30 6.70 86.45 0.58 1.88 16 14 N -0.53 -15.98 5.34 -882.47 -4.71 -20.69 16 15 C 0.04 0.90 5.38 86.30 0.46 1.36 16 16 C 0.08 1.51 7.18 71.98 0.52 2.02 16 17 O -0.59 -13.31 10.44 -148.98 -1.56 -14.86 16 18 C 0.07 2.55 4.25 86.61 0.37 2.92 16 19 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 20 H 0.01 0.73 7.58 -2.39 -0.02 0.71 16 21 H 0.01 0.64 7.07 -2.39 -0.02 0.63 16 22 H 0.05 2.17 7.76 -2.39 -0.02 2.16 16 23 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 24 H 0.05 1.36 7.68 -2.39 -0.02 1.34 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.03 0.77 7.99 -2.39 -0.02 0.75 16 27 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.39 5.13 9.12 -74.06 -0.68 4.46 16 31 H 0.08 2.91 7.03 -2.39 -0.02 2.89 16 32 H 0.03 1.27 7.53 -2.39 -0.02 1.26 16 Total: -1.00 -69.99 255.72 -0.84 -70.83 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.35 Total: 7.41 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 2.90 Total: -29.65 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -4.41 Total: -81.53 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.56 Total: -14.86 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -69.99 -0.84 -70.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260785620.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.046 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds