Wall clock time and date at job start Mon Mar 30 2020 02:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46893 * 2 1 4 4 N 1.46897 * 109.47032 * 239.99805 * 2 1 3 5 5 C 1.46897 * 110.99813 * 225.86619 * 4 2 1 6 6 C 1.50697 * 110.43720 * 305.20698 * 5 4 2 7 7 H 1.08000 * 119.99377 * 118.19706 * 6 5 4 8 8 C 1.37872 * 120.00572 * 298.19788 * 6 5 4 9 9 N 1.31519 * 119.99368 * 353.38391 * 8 6 5 10 10 Si 1.86792 * 120.00376 * 173.38530 * 8 6 5 11 11 H 1.48500 * 109.47021 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47337 * 120.00150 * 10 8 6 13 13 H 1.48507 * 109.47269 * 239.99966 * 10 8 6 14 14 C 1.54804 * 110.48675 * 67.75805 * 5 4 2 15 15 C 1.55349 * 101.93323 * 97.81935 * 14 5 4 16 16 O 1.44386 * 103.50078 * 37.05459 * 15 14 5 17 17 C 1.43742 * 106.97082 * 319.90675 * 16 15 14 18 18 H 1.08992 * 109.47033 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46740 * 300.00514 * 1 2 3 20 20 H 1.08999 * 109.46919 * 59.99429 * 1 2 3 21 21 H 1.08999 * 109.46658 * 120.00087 * 2 1 3 22 22 H 1.08993 * 109.47440 * 305.98809 * 3 2 1 23 23 H 1.09000 * 109.47366 * 65.99865 * 3 2 1 24 24 H 1.09007 * 109.46813 * 185.99109 * 3 2 1 25 25 H 1.00907 * 110.99547 * 101.91505 * 4 2 1 26 26 H 0.97007 * 119.99218 * 180.02562 * 9 8 6 27 27 H 1.09007 * 110.90852 * 215.99100 * 14 5 4 28 28 H 1.08995 * 110.91070 * 339.59454 * 14 5 4 29 29 H 1.08998 * 110.64249 * 278.53437 * 15 14 5 30 30 H 1.09001 * 110.72037 * 155.60540 * 15 14 5 31 31 H 1.09003 * 109.87479 * 267.08757 * 17 16 15 32 32 H 1.08998 * 109.99887 * 146.01169 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.0955 -1.6339 -0.8613 6 6 4.1998 -0.9265 -0.1190 7 1 4.4474 -1.2216 0.8899 8 6 4.8940 0.0974 -0.7278 9 7 4.6834 0.3710 -1.9969 10 14 6.1335 1.0960 0.2497 11 1 6.1848 0.5918 1.6455 12 1 7.4753 0.9658 -0.3728 13 1 5.7260 2.5241 0.2534 14 6 2.5424 -2.8089 -0.0189 15 6 2.3370 -3.9084 -1.0969 16 8 3.4589 -3.7220 -1.9865 17 6 3.6454 -2.3045 -2.1352 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8899 21 1 1.8933 -0.5139 0.8900 22 1 1.5918 1.9864 -0.8315 23 1 1.7670 1.9244 0.9388 24 1 3.1248 1.4444 -0.1073 25 1 2.3236 -0.0323 -1.8994 26 1 5.1721 1.0912 -2.4253 27 1 3.2687 -3.1271 0.7291 28 1 1.5959 -2.5398 0.4499 29 1 1.3971 -3.7558 -1.6273 30 1 2.3653 -4.9005 -0.6463 31 1 3.0976 -1.9482 -3.0077 32 1 4.7057 -2.0775 -2.2454 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260847846.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:01 Heat of formation + Delta-G solvation = -53.233960 kcal Electronic energy + Delta-G solvation = -13982.923097 eV Core-core repulsion = 11750.120731 eV Total energy + Delta-G solvation = -2232.802366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.55172 -35.73903 -32.76724 -30.89454 -28.65499 -26.49865 -26.25575 -24.66714 -21.82911 -19.75904 -18.88037 -16.60863 -15.44304 -15.05489 -14.37708 -13.94923 -13.58559 -13.36754 -12.88138 -12.29085 -11.93948 -11.68480 -11.47482 -11.42613 -11.04136 -10.72102 -10.50831 -10.43215 -10.23485 -10.00315 -9.58266 -9.54256 -9.30146 -8.76015 -8.25932 -7.09972 -6.14332 -4.25465 3.17632 3.28050 3.31564 4.28462 5.03755 5.15182 5.54328 5.86715 5.95454 6.00573 6.11784 6.16890 6.33162 6.37609 6.52867 6.57493 6.65116 6.72500 6.77608 6.95601 7.02160 7.09922 7.22676 7.37511 7.55431 7.70406 7.95026 8.15001 8.61440 8.81752 8.96647 9.41923 10.84837 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.018430 C = 0.013018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.901625 B = 1518.878626 C = 2150.415267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.095 3.905 3 C -0.168 4.168 4 N -0.678 5.678 5 C 0.208 3.792 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.072 3.928 9 N -0.887 5.887 10 Si 0.884 3.116 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C -0.140 4.140 15 C 0.052 3.948 16 O -0.402 6.402 17 C 0.078 3.922 18 H 0.048 0.952 19 H 0.039 0.961 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.039 0.961 23 H 0.033 0.967 24 H 0.078 0.922 25 H 0.351 0.649 26 H 0.265 0.735 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -0.717 2.576 5.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 C -0.227 4.227 4 N -0.310 5.310 5 C 0.118 3.882 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.131 4.131 9 N -0.526 5.526 10 Si 0.712 3.288 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C -0.178 4.178 15 C -0.025 4.025 16 O -0.321 6.321 17 C 0.002 3.998 18 H 0.067 0.933 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.096 0.904 25 H 0.171 0.829 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.015 -1.242 2.327 5.666 hybrid contribution 1.351 1.569 0.751 2.203 sum -3.663 0.327 3.078 4.796 Atomic orbital electron populations 1.21861 0.97272 1.00584 0.99686 1.21115 0.92468 0.92883 0.95101 1.22425 1.03753 0.97376 0.99101 1.61068 1.37846 1.21641 1.10494 1.19734 0.88041 0.89336 0.91051 1.21665 1.17709 1.17000 1.00562 0.92487 1.24911 0.96305 0.97147 0.94710 1.69847 1.42513 1.30689 1.09540 0.86673 0.81353 0.80165 0.80640 1.19704 1.20921 1.20807 1.23209 1.00264 0.96506 0.97822 1.23383 0.90003 0.98079 0.91014 1.88723 1.49907 1.26101 1.67386 1.23238 1.01753 0.77489 0.97347 0.93323 0.94219 0.93624 0.91631 0.94217 0.94764 0.90353 0.82898 0.92521 0.91859 0.91785 0.93375 0.91402 0.94363 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.52 37.16 0.35 -1.98 16 2 C 0.10 1.94 2.13 -67.71 -0.14 1.79 16 3 C -0.17 -3.42 8.95 37.16 0.33 -3.09 16 4 N -0.68 -15.18 5.86 -92.67 -0.54 -15.73 16 5 C 0.21 4.92 0.44 -131.23 -0.06 4.86 16 6 C -0.53 -13.52 6.26 -34.44 -0.22 -13.74 16 7 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 8 C 0.07 1.82 3.09 -17.82 -0.06 1.77 16 9 N -0.89 -22.90 10.69 55.43 0.59 -22.31 16 10 Si 0.88 20.32 28.98 -169.99 -4.93 15.39 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C -0.14 -2.95 5.89 -24.53 -0.14 -3.09 16 15 C 0.05 1.04 7.73 38.40 0.30 1.34 16 16 O -0.40 -9.43 11.52 -35.23 -0.41 -9.84 16 17 C 0.08 1.93 6.19 37.73 0.23 2.16 16 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.07 1.42 6.25 -51.93 -0.32 1.09 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.08 1.80 4.77 -51.92 -0.25 1.56 16 25 H 0.35 8.49 6.79 -39.29 -0.27 8.22 16 26 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.06 1.35 7.72 -51.93 -0.40 0.95 16 28 H 0.06 1.27 6.99 -51.93 -0.36 0.91 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.95 7.90 -51.93 -0.41 0.54 16 32 H 0.09 2.40 6.87 -51.93 -0.36 2.04 16 LS Contribution 248.78 15.07 3.75 3.75 Total: -1.00 -25.62 248.78 -5.80 -31.42 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.86 Total: 7.29 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 0.60 Total: -9.97 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.05 Total: -38.04 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.41 Total: -9.84 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.93 Total: 15.39 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -25.62 -5.80 -31.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847846.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.816 kcal (2) G-P(sol) polarization free energy of solvation -25.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds