Wall clock time and date at job start Mon Mar 30 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99672 * 2 1 4 4 H 1.48500 * 109.47353 * 270.00225 * 3 2 1 5 5 H 1.48501 * 109.47107 * 30.00723 * 3 2 1 6 6 H 1.48500 * 109.46656 * 149.99981 * 3 2 1 7 7 C 1.37868 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00030 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46949 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47673 * 305.00140 * 10 9 7 12 12 N 1.46904 * 109.47254 * 65.00727 * 10 9 7 13 13 C 1.53007 * 109.47129 * 185.00411 * 10 9 7 14 14 H 1.09002 * 109.47648 * 300.02152 * 13 10 9 15 15 C 1.53089 * 109.47969 * 180.02562 * 13 10 9 16 16 C 1.53176 * 109.16219 * 182.39504 * 15 13 10 17 17 C 1.53175 * 109.03666 * 56.97677 * 16 15 13 18 18 C 1.53094 * 109.16661 * 303.02385 * 17 16 15 19 19 O 1.42897 * 109.49063 * 60.05259 * 13 10 9 20 20 H 0.97003 * 119.99973 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46788 * 60.00777 * 9 7 2 22 22 H 1.08994 * 109.47191 * 300.00130 * 9 7 2 23 23 H 1.00906 * 110.99444 * 296.04587 * 12 10 9 24 24 H 1.00893 * 111.00017 * 59.98899 * 12 10 9 25 25 H 1.08997 * 109.52675 * 62.49297 * 15 13 10 26 26 H 1.08995 * 109.52428 * 302.29965 * 15 13 10 27 27 H 1.08997 * 109.55040 * 176.84788 * 16 15 13 28 28 H 1.09004 * 109.54565 * 297.11436 * 16 15 13 29 29 H 1.09004 * 109.52259 * 62.92651 * 17 16 15 30 30 H 1.09006 * 109.52330 * 183.11484 * 17 16 15 31 31 H 1.09006 * 109.47665 * 297.62062 * 18 17 16 32 32 H 1.08993 * 109.47955 * 177.58818 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 1 3.5873 -3.1761 0.8393 12 7 3.6326 -3.2923 -1.2579 13 6 5.5465 -2.6383 0.1230 14 1 5.9810 -2.0984 -0.7184 15 6 6.0571 -4.0816 0.1212 16 6 7.5775 -4.0773 0.3069 17 6 7.9201 -3.3410 1.6057 18 6 7.3375 -1.9263 1.5502 19 8 5.9254 -2.0015 1.3448 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8746 -0.6799 -0.8911 23 1 2.6288 -3.3613 -1.3339 24 1 4.0231 -2.8104 -2.0536 25 1 5.8076 -4.5551 -0.8283 26 1 5.5920 -4.6335 0.9379 27 1 7.9411 -5.1033 0.3627 28 1 8.0464 -3.5682 -0.5353 29 1 7.4926 -3.8779 2.4525 30 1 9.0029 -3.2849 1.7179 31 1 7.7955 -1.3767 0.7277 32 1 7.5414 -1.4122 2.4893 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260953051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:49 Heat of formation + Delta-G solvation = -70.075047 kcal Electronic energy + Delta-G solvation = -13276.314078 eV Core-core repulsion = 11042.781427 eV Total energy + Delta-G solvation = -2233.532651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.18873 -35.45526 -33.37948 -32.39196 -30.19593 -28.50102 -25.41244 -23.92547 -22.12220 -20.00940 -19.64893 -17.05130 -16.07641 -15.69418 -14.53951 -14.44644 -14.15877 -13.99540 -13.41780 -13.08673 -12.55494 -12.44850 -12.01382 -11.84026 -11.27641 -11.00703 -10.87220 -10.65344 -10.27130 -10.16536 -10.03653 -9.59800 -9.14589 -9.05302 -8.54586 -7.80465 -6.05420 -4.03599 3.30508 3.38654 3.46114 4.08410 4.46044 4.93794 4.96564 5.04349 5.26117 5.28365 5.44038 5.62741 5.63897 5.69706 5.89047 5.92537 6.05043 6.06744 6.20269 6.39577 6.44474 6.64276 6.70623 7.22567 7.32411 7.67075 7.78116 8.00030 8.23134 8.50552 8.97863 9.57912 11.07505 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048954 B = 0.009675 C = 0.008516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.831409 B = 2893.431104 C = 3286.974777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.041 4.041 10 C 0.110 3.890 11 H 0.078 0.922 12 N -0.838 5.838 13 C 0.098 3.902 14 H 0.047 0.953 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.156 4.156 18 C 0.061 3.939 19 O -0.371 6.371 20 H 0.263 0.737 21 H 0.030 0.970 22 H 0.006 0.994 23 H 0.354 0.646 24 H 0.327 0.673 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.736 -5.220 0.244 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.080 4.080 10 C -0.002 4.002 11 H 0.096 0.904 12 N -0.368 5.368 13 C 0.040 3.960 14 H 0.065 0.935 15 C -0.176 4.176 16 C -0.162 4.162 17 C -0.193 4.193 18 C -0.017 4.017 19 O -0.289 6.289 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.024 0.976 23 H 0.168 0.832 24 H 0.137 0.863 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.832 -5.673 0.680 15.895 hybrid contribution 0.119 1.826 -0.379 1.869 sum 14.951 -3.847 0.302 15.441 Atomic orbital electron populations 1.69922 1.06274 1.26877 1.51074 1.25011 0.94689 0.99195 0.94454 0.86781 0.80621 0.83609 0.78346 1.20537 1.21436 1.18784 1.21100 0.89389 0.94383 1.51055 0.90979 1.20264 0.97289 0.93544 0.96935 1.21166 0.90137 0.95875 0.93021 0.90366 1.59080 1.17718 1.56477 1.03497 1.22119 0.96492 0.91509 0.85923 0.93531 1.22086 0.94108 0.97983 1.03440 1.21637 0.97208 1.00158 0.97168 1.22197 1.00531 0.97700 0.98919 1.22491 0.82636 0.95452 1.01077 1.87986 1.21030 1.79328 1.40598 0.92779 0.95210 0.97595 0.83169 0.86254 0.89882 0.91557 0.92028 0.92330 0.91204 0.91604 0.93815 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -14.76 9.10 -34.44 -0.31 -15.07 16 8 H 0.07 2.16 7.39 -52.48 -0.39 1.77 16 9 C -0.04 -1.01 3.61 -27.88 -0.10 -1.11 16 10 C 0.11 2.24 2.55 -67.71 -0.17 2.07 16 11 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 12 N -0.84 -15.34 8.48 -4.66 -0.04 -15.38 16 13 C 0.10 1.72 2.38 -26.68 -0.06 1.65 16 14 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.14 -2.04 5.22 -26.59 -0.14 -2.18 16 16 C -0.12 -1.51 6.03 -26.55 -0.16 -1.67 16 17 C -0.16 -1.84 6.14 -26.59 -0.16 -2.00 16 18 C 0.06 0.84 6.84 37.21 0.25 1.10 16 19 O -0.37 -6.84 9.65 -35.23 -0.34 -7.18 16 20 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 21 H 0.03 0.77 6.60 -51.93 -0.34 0.43 16 22 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 23 H 0.35 6.94 7.90 -39.29 -0.31 6.63 16 24 H 0.33 5.60 9.00 -39.30 -0.35 5.25 16 25 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 255.38 15.07 3.85 3.85 Total: -1.00 -30.46 255.38 -6.54 -37.00 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.16 Total: 6.60 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.96 Total: -15.33 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.73 Total: -42.54 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.34 Total: -7.18 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.46 -6.54 -37.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.077 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds