Wall clock time and date at job start Mon Mar 30 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99672 * 2 1 4 4 H 1.48500 * 109.47353 * 270.00225 * 3 2 1 5 5 H 1.48501 * 109.47107 * 30.00723 * 3 2 1 6 6 H 1.48500 * 109.46656 * 149.99981 * 3 2 1 7 7 C 1.37868 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00030 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46949 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47673 * 305.00140 * 10 9 7 12 12 N 1.46904 * 109.47254 * 65.00727 * 10 9 7 13 13 C 1.53007 * 109.47129 * 185.00411 * 10 9 7 14 14 H 1.09002 * 109.47648 * 300.02152 * 13 10 9 15 15 C 1.53089 * 109.47969 * 180.02562 * 13 10 9 16 16 C 1.53176 * 109.16219 * 182.39504 * 15 13 10 17 17 C 1.53175 * 109.03666 * 56.97677 * 16 15 13 18 18 C 1.53094 * 109.16661 * 303.02385 * 17 16 15 19 19 O 1.42897 * 109.49063 * 60.05259 * 13 10 9 20 20 H 0.97003 * 119.99973 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46788 * 60.00777 * 9 7 2 22 22 H 1.08994 * 109.47191 * 300.00130 * 9 7 2 23 23 H 1.00906 * 110.99444 * 296.04587 * 12 10 9 24 24 H 1.00893 * 111.00017 * 59.98899 * 12 10 9 25 25 H 1.08997 * 109.52675 * 62.49297 * 15 13 10 26 26 H 1.08995 * 109.52428 * 302.29965 * 15 13 10 27 27 H 1.08997 * 109.55040 * 176.84788 * 16 15 13 28 28 H 1.09004 * 109.54565 * 297.11436 * 16 15 13 29 29 H 1.09004 * 109.52259 * 62.92651 * 17 16 15 30 30 H 1.09006 * 109.52330 * 183.11484 * 17 16 15 31 31 H 1.09006 * 109.47665 * 297.62062 * 18 17 16 32 32 H 1.08993 * 109.47955 * 177.58818 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 1 3.5873 -3.1761 0.8393 12 7 3.6326 -3.2923 -1.2579 13 6 5.5465 -2.6383 0.1230 14 1 5.9810 -2.0984 -0.7184 15 6 6.0571 -4.0816 0.1212 16 6 7.5775 -4.0773 0.3069 17 6 7.9201 -3.3410 1.6057 18 6 7.3375 -1.9263 1.5502 19 8 5.9254 -2.0015 1.3448 20 1 -0.4850 0.8401 0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8746 -0.6799 -0.8911 23 1 2.6288 -3.3613 -1.3339 24 1 4.0231 -2.8104 -2.0536 25 1 5.8076 -4.5551 -0.8283 26 1 5.5920 -4.6335 0.9379 27 1 7.9411 -5.1033 0.3627 28 1 8.0464 -3.5682 -0.5353 29 1 7.4926 -3.8779 2.4525 30 1 9.0029 -3.2849 1.7179 31 1 7.7955 -1.3767 0.7277 32 1 7.5414 -1.4122 2.4893 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260953051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:49 Heat of formation + Delta-G solvation = -92.166264 kcal Electronic energy + Delta-G solvation = -13277.272025 eV Core-core repulsion = 11042.781427 eV Total energy + Delta-G solvation = -2234.490598 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.45270 -37.09668 -34.60768 -34.42397 -31.46997 -30.42969 -26.89772 -25.23359 -23.70749 -21.42567 -21.06054 -19.10061 -17.53573 -16.99061 -16.38581 -15.77547 -15.43745 -15.31896 -15.01989 -14.74064 -14.28119 -13.84011 -13.53739 -13.35557 -12.95580 -12.44858 -12.29009 -11.98332 -11.90672 -11.82015 -11.55475 -11.30686 -10.97287 -10.80032 -10.29725 -9.42646 -8.32052 -6.35126 1.29744 1.33586 1.46350 2.32968 2.82642 3.03145 3.79775 3.94288 4.02941 4.09824 4.21362 4.26748 4.42939 4.52558 4.70095 4.79015 4.84405 4.97129 5.01516 5.14574 5.18468 5.25345 5.33087 5.39228 5.50003 5.62598 6.20763 6.32597 6.45583 6.70098 6.72050 7.29842 8.83826 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.048954 B = 0.009675 C = 0.008516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.831409 B = 2893.431104 C = 3286.974777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.525 4.525 8 H 0.041 0.959 9 C -0.033 4.033 10 C 0.115 3.885 11 H 0.054 0.946 12 N -0.823 5.823 13 C 0.103 3.897 14 H 0.053 0.947 15 C -0.132 4.132 16 C -0.121 4.121 17 C -0.151 4.151 18 C 0.050 3.950 19 O -0.405 6.405 20 H 0.266 0.734 21 H 0.015 0.985 22 H 0.013 0.987 23 H 0.346 0.654 24 H 0.338 0.662 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.344 -4.952 -0.118 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.563 4.563 8 H 0.059 0.941 9 C -0.072 4.072 10 C 0.002 3.998 11 H 0.073 0.927 12 N -0.352 5.352 13 C 0.045 3.955 14 H 0.071 0.929 15 C -0.170 4.170 16 C -0.158 4.158 17 C -0.188 4.188 18 C -0.026 4.026 19 O -0.325 6.325 20 H 0.074 0.926 21 H 0.034 0.966 22 H 0.031 0.969 23 H 0.159 0.841 24 H 0.149 0.851 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.468 -5.419 0.308 18.291 hybrid contribution -0.732 1.688 -0.242 1.856 sum 16.736 -3.730 0.066 17.146 Atomic orbital electron populations 1.70059 1.08021 1.28011 1.52641 1.25917 0.95526 1.03186 0.94280 0.85719 0.79305 0.78908 0.79064 1.19059 1.20976 1.18075 1.21391 0.91542 0.93240 1.50135 0.94097 1.20181 0.94501 0.96254 0.96305 1.21028 0.92655 0.92999 0.93070 0.92748 1.59047 1.17051 1.55924 1.03198 1.21977 0.93915 0.93475 0.86160 0.92920 1.22004 0.96302 0.95667 1.03053 1.21639 0.94795 1.01616 0.97740 1.22172 1.02141 0.96033 0.98498 1.22797 0.80462 0.97259 1.02114 1.87931 1.24040 1.79738 1.40755 0.92558 0.96627 0.96910 0.84145 0.85083 0.89693 0.92803 0.90102 0.91273 0.91817 0.88676 0.92820 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 45.77 27.47 68.60 1.88 47.66 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.26 -12.05 6.54 99.48 0.65 -11.40 16 7 C -0.53 -30.31 9.10 25.60 0.23 -30.08 16 8 H 0.04 2.55 7.39 -2.91 -0.02 2.53 16 9 C -0.03 -1.62 3.61 29.85 0.11 -1.51 16 10 C 0.11 4.68 2.55 44.92 0.11 4.79 16 11 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 12 N -0.82 -29.84 8.48 -168.66 -1.43 -31.27 16 13 C 0.10 3.47 2.38 30.63 0.07 3.54 16 14 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 15 C -0.13 -3.67 5.22 30.68 0.16 -3.51 16 16 C -0.12 -2.52 6.03 30.71 0.19 -2.33 16 17 C -0.15 -3.07 6.14 30.68 0.19 -2.88 16 18 C 0.05 1.26 6.84 72.01 0.49 1.75 16 19 O -0.41 -14.43 9.65 -148.98 -1.44 -15.87 16 20 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 21 H 0.02 0.80 6.60 -2.39 -0.02 0.78 16 22 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 23 H 0.35 13.74 7.90 -89.69 -0.71 13.04 16 24 H 0.34 11.14 9.00 -89.70 -0.81 10.33 16 25 H 0.08 2.30 7.69 -2.39 -0.02 2.28 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -65.62 255.38 0.86 -64.76 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.47 Total: 23.40 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 2.02 Total: -29.29 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -1.13 Total: -90.66 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -1.44 Total: -15.87 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.66 kcal Total: -65.62 0.86 -64.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.404 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds