Wall clock time and date at job start Mon Mar 30 2020 02:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46943 * 54.99925 * 10 9 7 12 12 N 1.46896 * 109.47068 * 294.99995 * 10 9 7 13 13 C 1.53000 * 109.47309 * 174.99526 * 10 9 7 14 14 H 1.09005 * 109.48221 * 299.98311 * 13 10 9 15 15 C 1.53089 * 109.48133 * 179.97438 * 13 10 9 16 16 C 1.53179 * 109.16217 * 182.41178 * 15 13 10 17 17 C 1.53178 * 109.03703 * 56.98219 * 16 15 13 18 18 C 1.53099 * 109.16176 * 303.01794 * 17 16 15 19 19 O 1.42901 * 109.41248 * 57.60999 * 18 17 16 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 23 23 H 1.00903 * 110.99681 * 299.99921 * 12 10 9 24 24 H 1.00904 * 111.00380 * 63.95073 * 12 10 9 25 25 H 1.09000 * 109.52320 * 302.31418 * 15 13 10 26 26 H 1.08991 * 109.52397 * 62.50314 * 15 13 10 27 27 H 1.08995 * 109.54507 * 297.11089 * 16 15 13 28 28 H 1.09003 * 109.53977 * 176.84279 * 16 15 13 29 29 H 1.09004 * 109.52096 * 183.11696 * 17 16 15 30 30 H 1.08997 * 109.52464 * 62.92240 * 17 16 15 31 31 H 1.09006 * 109.47673 * 297.62718 * 18 17 16 32 32 H 1.08997 * 109.47874 * 177.59298 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 1 2.9296 -3.5507 0.8596 12 7 3.0085 -3.6602 -1.2369 13 6 1.4847 -4.9828 0.1509 14 1 0.9187 -4.9844 1.0825 15 6 2.4794 -6.1465 0.1563 16 6 1.7073 -7.4675 0.2285 17 6 0.7323 -7.5416 -0.9506 18 6 -0.1949 -6.3239 -0.9132 19 8 0.5882 -5.1292 -0.9523 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5524 0.9029 22 1 0.6241 -2.5613 -0.8770 23 1 2.3962 -3.7621 -2.0324 24 1 3.5702 -2.8259 -1.3176 25 1 3.0740 -6.1217 -0.7569 26 1 3.1359 -6.0605 1.0220 27 1 1.1513 -7.5142 1.1649 28 1 2.4067 -8.3019 0.1762 29 1 0.1394 -8.4532 -0.8763 30 1 1.2917 -7.5448 -1.8861 31 1 -0.7832 -6.3431 0.0043 32 1 -0.8628 -6.3490 -1.7742 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260953053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:52 Heat of formation + Delta-G solvation = -99.591624 kcal Electronic energy + Delta-G solvation = -13312.901454 eV Core-core repulsion = 11078.088869 eV Total energy + Delta-G solvation = -2234.812586 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.51143 -37.13101 -34.66926 -34.49392 -31.41584 -29.63001 -26.91142 -25.33501 -24.05940 -21.66140 -20.98246 -18.98086 -17.50606 -16.96664 -16.44097 -15.70210 -15.46370 -15.20637 -15.05560 -14.72487 -14.34099 -13.85956 -13.48379 -13.11293 -12.68064 -12.53724 -12.24959 -12.03827 -11.97577 -11.93144 -11.55698 -11.20946 -10.65818 -10.58633 -10.28981 -9.41778 -8.70321 -6.41191 1.51091 1.59729 1.78406 2.55384 2.90587 3.14556 3.78153 3.82525 3.96096 3.99476 4.13452 4.32029 4.37865 4.55836 4.60862 4.72430 4.79675 4.91850 4.98318 5.09799 5.12165 5.19474 5.23741 5.42812 5.51874 5.93314 6.15088 6.29777 6.44147 6.54343 6.67904 7.42658 8.69676 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.068181 B = 0.008256 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.572873 B = 3390.515099 C = 3603.590681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.042 4.042 3 Si 1.120 2.880 4 H -0.287 1.287 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.613 4.613 8 H 0.057 0.943 9 C -0.008 4.008 10 C 0.114 3.886 11 H 0.074 0.926 12 N -0.819 5.819 13 C 0.101 3.899 14 H 0.041 0.959 15 C -0.133 4.133 16 C -0.121 4.121 17 C -0.146 4.146 18 C 0.049 3.951 19 O -0.399 6.399 20 H 0.252 0.748 21 H -0.024 1.024 22 H -0.012 1.012 23 H 0.334 0.666 24 H 0.339 0.661 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -13.632 -0.586 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.941 3.059 4 H -0.213 1.213 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.651 4.651 8 H 0.075 0.925 9 C -0.046 4.046 10 C 0.002 3.998 11 H 0.092 0.908 12 N -0.346 5.346 13 C 0.043 3.957 14 H 0.058 0.942 15 C -0.171 4.171 16 C -0.158 4.158 17 C -0.184 4.184 18 C -0.027 4.027 19 O -0.319 6.319 20 H 0.061 0.939 21 H -0.006 1.006 22 H 0.006 0.994 23 H 0.146 0.854 24 H 0.151 0.849 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.846 -12.551 -0.437 13.134 hybrid contribution -0.880 -0.784 0.098 1.183 sum 2.966 -13.335 -0.339 13.665 Atomic orbital electron populations 1.70916 1.08164 1.29668 1.48849 1.27485 0.96562 1.07079 0.92772 0.82904 0.74031 0.70894 0.78094 1.21266 1.19374 1.19158 1.22429 0.94682 0.93066 1.54895 0.92454 1.19797 0.95497 0.95535 0.93809 1.21263 0.93332 0.91580 0.93646 0.90794 1.59177 1.27188 1.44543 1.03650 1.22162 0.90090 0.95152 0.88283 0.94151 1.22008 0.97901 0.93864 1.03329 1.21635 0.98559 0.97212 0.98399 1.22128 0.98466 0.98451 0.99350 1.22772 0.93308 0.84594 1.02057 1.87931 1.55062 1.42316 1.46543 0.93861 1.00577 0.99418 0.85449 0.84920 0.90618 0.91059 0.91840 0.89793 0.88815 0.91434 0.93625 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.02 13.65 21.45 0.29 -59.73 16 2 C -0.04 -2.47 5.46 84.65 0.46 -2.01 16 3 Si 1.12 50.80 29.90 68.60 2.05 52.85 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.61 -35.05 8.55 25.60 0.22 -34.83 16 8 H 0.06 3.12 7.14 -2.91 -0.02 3.10 16 9 C -0.01 -0.42 3.72 29.85 0.11 -0.31 16 10 C 0.11 4.87 2.63 44.92 0.12 4.99 16 11 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 12 N -0.82 -32.13 8.39 -168.68 -1.42 -33.55 16 13 C 0.10 3.70 2.46 30.62 0.08 3.77 16 14 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 15 C -0.13 -3.85 5.29 30.68 0.16 -3.69 16 16 C -0.12 -2.70 6.03 30.71 0.19 -2.52 16 17 C -0.15 -3.21 6.14 30.69 0.19 -3.02 16 18 C 0.05 1.36 6.84 72.02 0.49 1.85 16 19 O -0.40 -15.00 9.24 -148.98 -1.38 -16.37 16 20 H 0.25 16.56 7.22 -92.70 -0.67 15.89 16 21 H -0.02 -1.41 8.01 -2.38 -0.02 -1.43 16 22 H -0.01 -0.74 7.70 -2.39 -0.02 -0.76 16 23 H 0.33 13.51 8.45 -89.69 -0.76 12.75 16 24 H 0.34 13.62 7.90 -89.69 -0.71 12.91 16 25 H 0.08 2.33 7.54 -2.39 -0.02 2.31 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -66.37 256.85 1.30 -65.07 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.27 Total: 27.49 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 2.01 Total: -35.75 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -1.12 Total: -93.28 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -1.38 Total: -16.37 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -66.37 1.30 -65.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.526 kcal (2) G-P(sol) polarization free energy of solvation -66.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds