Wall clock time and date at job start Mon Mar 30 2020 02:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47251 * 305.00182 * 10 9 7 12 12 N 1.46900 * 109.47083 * 64.99908 * 10 9 7 13 13 C 1.53001 * 109.47148 * 184.99859 * 10 9 7 14 14 H 1.08997 * 109.48032 * 65.00482 * 13 10 9 15 15 C 1.53093 * 109.47821 * 185.02125 * 13 10 9 16 16 C 1.53179 * 109.16323 * 177.59077 * 15 13 10 17 17 C 1.53182 * 109.03694 * 303.02431 * 16 15 13 18 18 C 1.53085 * 109.16433 * 56.97729 * 17 16 15 19 19 O 1.42901 * 109.48269 * 304.97744 * 13 10 9 20 20 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 21 21 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 22 22 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 23 23 H 1.00894 * 111.00039 * 296.04309 * 12 10 9 24 24 H 1.00897 * 111.00471 * 60.00211 * 12 10 9 25 25 H 1.08996 * 109.52625 * 297.49509 * 15 13 10 26 26 H 1.08997 * 109.52500 * 57.62537 * 15 13 10 27 27 H 1.08999 * 109.54216 * 62.88740 * 16 15 13 28 28 H 1.08994 * 109.54965 * 183.06379 * 16 15 13 29 29 H 1.08995 * 109.52232 * 176.88453 * 17 16 15 30 30 H 1.09000 * 109.51799 * 297.00585 * 17 16 15 31 31 H 1.08998 * 109.48339 * 62.37294 * 18 17 16 32 32 H 1.09004 * 109.48158 * 182.40232 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 1 2.9261 -3.5534 -0.8563 12 7 3.0130 -3.6567 1.2401 13 6 1.4838 -4.9833 -0.1379 14 1 0.9854 -5.0249 -1.1064 15 6 2.4658 -6.1517 -0.0186 16 6 1.6889 -7.4702 -0.0850 17 6 0.6317 -7.4836 1.0235 18 6 -0.2793 -6.2638 0.8638 19 8 0.5096 -5.0729 0.9037 20 1 -0.4849 0.8401 0.0041 21 1 0.6280 -2.5591 0.8866 22 1 0.6206 -2.5548 -0.8933 23 1 3.5751 -2.8223 1.3161 24 1 2.4039 -3.7563 2.0383 25 1 3.1830 -6.1100 -0.8382 26 1 2.9949 -6.0872 0.9322 27 1 1.2006 -7.5572 -1.0556 28 1 2.3753 -8.3054 0.0539 29 1 0.0375 -8.3943 0.9490 30 1 1.1231 -7.4478 1.9958 31 1 -0.8010 -6.3222 -0.0914 32 1 -1.0072 -6.2451 1.6750 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260953054.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:54 Heat of formation + Delta-G solvation = -94.464944 kcal Electronic energy + Delta-G solvation = -13285.890591 eV Core-core repulsion = 11051.300315 eV Total energy + Delta-G solvation = -2234.590276 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41745 -36.90322 -34.50806 -34.40766 -31.35008 -29.88528 -27.04078 -25.32758 -23.90813 -21.41735 -20.87455 -18.68422 -17.32504 -16.76629 -16.60678 -16.22677 -15.39995 -15.08876 -14.66152 -14.53621 -14.19867 -13.65471 -13.47476 -13.21001 -12.81110 -12.49159 -12.23340 -12.10035 -11.94356 -11.83137 -11.53615 -11.20538 -10.89190 -10.61041 -10.21020 -9.29938 -8.20237 -6.32319 1.38810 1.39087 1.52318 2.39242 3.00472 3.12552 3.89173 3.92853 4.02668 4.06555 4.22256 4.39524 4.48584 4.63258 4.72480 4.84347 4.90824 5.02586 5.04944 5.20498 5.23415 5.29747 5.41017 5.56775 5.66531 5.82187 6.19272 6.41095 6.53094 6.78331 6.86439 7.37223 8.91462 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.067629 B = 0.008281 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.925051 B = 3380.486009 C = 3613.170960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.010 3.990 10 C 0.107 3.893 11 H 0.075 0.925 12 N -0.820 5.820 13 C 0.101 3.899 14 H 0.041 0.959 15 C -0.132 4.132 16 C -0.121 4.121 17 C -0.146 4.146 18 C 0.049 3.951 19 O -0.398 6.398 20 H 0.261 0.739 21 H -0.008 1.008 22 H -0.021 1.021 23 H 0.338 0.662 24 H 0.334 0.666 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.146 -13.179 0.747 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.083 0.917 9 C -0.029 4.029 10 C -0.005 4.005 11 H 0.093 0.907 12 N -0.347 5.347 13 C 0.043 3.957 14 H 0.059 0.941 15 C -0.170 4.170 16 C -0.158 4.158 17 C -0.184 4.184 18 C -0.027 4.027 19 O -0.318 6.318 20 H 0.070 0.930 21 H 0.010 0.990 22 H -0.003 1.003 23 H 0.151 0.849 24 H 0.145 0.855 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.346 -13.605 0.585 14.022 hybrid contribution -0.689 1.865 -0.088 1.990 sum 2.656 -11.740 0.497 12.047 Atomic orbital electron populations 1.70147 1.07979 1.27514 1.51728 1.26013 0.95692 1.03473 0.94820 0.85376 0.79217 0.78757 0.77519 1.18218 1.20708 1.20659 1.21673 0.93477 0.92040 1.50279 0.91668 1.19586 0.94763 0.93904 0.94636 1.21375 0.93549 0.92046 0.93531 0.90701 1.59210 1.27228 1.44541 1.03746 1.22168 0.88856 0.95370 0.89349 0.94076 1.21992 0.97809 0.93659 1.03511 1.21638 0.98071 0.97345 0.98793 1.22120 0.98138 0.98424 0.99695 1.22747 0.93441 0.84822 1.01708 1.87964 1.50468 1.41508 1.51846 0.92982 0.98951 1.00262 0.84941 0.85501 0.91071 0.90558 0.91883 0.89924 0.88962 0.91482 0.93657 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.54 -30.38 8.55 25.60 0.22 -30.16 16 8 H 0.07 3.48 7.15 -2.91 -0.02 3.46 16 9 C 0.01 0.53 4.34 29.85 0.13 0.66 16 10 C 0.11 4.55 2.69 44.91 0.12 4.67 16 11 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 12 N -0.82 -31.71 8.18 -168.69 -1.38 -33.09 16 13 C 0.10 3.69 2.53 30.63 0.08 3.77 16 14 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 15 C -0.13 -3.82 5.25 30.69 0.16 -3.66 16 16 C -0.12 -2.75 6.03 30.72 0.19 -2.56 16 17 C -0.15 -3.27 6.14 30.68 0.19 -3.08 16 18 C 0.05 1.40 6.84 72.01 0.49 1.90 16 19 O -0.40 -15.29 9.22 -148.98 -1.37 -16.67 16 20 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 21 H -0.01 -0.48 7.73 -2.38 -0.02 -0.50 16 22 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 23 H 0.34 13.31 7.90 -89.70 -0.71 12.60 16 24 H 0.33 13.30 8.61 -89.70 -0.77 12.53 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 2.35 7.40 -2.39 -0.02 2.33 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -64.96 257.86 1.21 -63.75 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.38 Total: 25.26 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 2.04 Total: -28.14 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -1.09 Total: -90.88 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -1.37 Total: -16.67 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.96 1.21 -63.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953054.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.714 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds