Wall clock time and date at job start Mon Mar 30 2020 02:02:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86806 * 120.00017 * 2 1
4 4 H 1.48502 * 109.47097 * 0.02562 * 3 2 1
5 5 H 1.48495 * 109.46983 * 120.00297 * 3 2 1
6 6 H 1.48495 * 109.47498 * 240.00457 * 3 2 1
7 7 C 1.37879 * 120.00222 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99859 * 185.29324 * 7 2 1
9 9 C 1.50691 * 119.99818 * 5.28788 * 7 2 1
10 10 H 1.09004 * 109.47670 * 24.41023 * 9 7 2
11 11 C 1.53003 * 109.47198 * 264.41146 * 9 7 2
12 12 N 1.46897 * 109.47135 * 64.94091 * 11 9 7
13 13 C 1.52998 * 109.47474 * 144.41377 * 9 7 2
14 14 H 1.08999 * 109.48760 * 179.97438 * 13 9 7
15 15 C 1.53091 * 109.47807 * 299.99973 * 13 9 7
16 16 C 1.53175 * 109.16526 * 177.58905 * 15 13 9
17 17 C 1.53179 * 109.03618 * 303.01969 * 16 15 13
18 18 C 1.53092 * 109.16642 * 56.97790 * 17 16 15
19 19 O 1.42901 * 109.41543 * 302.39577 * 18 17 16
20 20 H 0.96994 * 119.99895 * 177.70022 * 1 2 3
21 21 H 1.08994 * 109.47268 * 184.94366 * 11 9 7
22 22 H 1.09003 * 109.46828 * 304.94423 * 11 9 7
23 23 H 1.00902 * 110.99964 * 173.33579 * 12 11 9
24 24 H 1.00906 * 111.00091 * 297.28950 * 12 11 9
25 25 H 1.08998 * 109.52340 * 297.49614 * 15 13 9
26 26 H 1.09008 * 109.52457 * 57.62126 * 15 13 9
27 27 H 1.08997 * 109.54853 * 62.88387 * 16 15 13
28 28 H 1.09000 * 109.55006 * 183.06635 * 16 15 13
29 29 H 1.09001 * 109.52582 * 176.88809 * 17 16 15
30 30 H 1.09009 * 109.52262 * 297.01023 * 17 16 15
31 31 H 1.08997 * 109.47940 * 62.37116 * 18 17 16
32 32 H 1.09002 * 109.48300 * 182.39823 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 1.2842 2.7465 0.0006
5 1 3.1030 1.6964 1.2124
6 1 3.1029 1.6966 -1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0812 -1.1960 0.0858
9 6 1.2560 -2.4962 -0.1214
10 1 0.3006 -2.3216 -0.6163
11 6 1.0094 -3.0742 1.2737
12 7 0.1174 -2.1798 2.0235
13 6 2.0833 -3.4858 -0.9443
14 1 1.5422 -4.4279 -1.0315
15 6 2.3301 -2.9077 -2.3403
16 6 3.2091 -3.8764 -3.1374
17 6 4.5122 -4.1164 -2.3689
18 6 4.1812 -4.6478 -0.9718
19 8 3.3364 -3.7139 -0.2963
20 1 -0.4850 -0.8393 -0.0337
21 1 0.5466 -4.0568 1.1833
22 1 1.9586 -3.1668 1.8015
23 1 -0.1480 -2.5906 2.9061
24 1 0.5430 -1.2750 2.1592
25 1 1.3775 -2.7743 -2.8529
26 1 2.8343 -1.9453 -2.2521
27 1 2.6835 -4.8223 -3.2683
28 1 3.4339 -3.4461 -4.1133
29 1 5.1202 -4.8474 -2.9020
30 1 5.0620 -3.1792 -2.2823
31 1 3.6676 -5.6051 -1.0593
32 1 5.1030 -4.7802 -0.4053
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261002537.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:00
Heat of formation + Delta-G solvation = -68.198170 kcal
Electronic energy + Delta-G solvation = -13690.402763 eV
Core-core repulsion = 11456.951500 eV
Total energy + Delta-G solvation = -2233.451263 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-38.77541 -35.20128 -32.97831 -31.66062 -30.98626 -27.34680 -24.04397 -23.85102
-22.28307 -19.89961 -19.55552 -16.59967 -15.60739 -14.98696 -14.53534 -14.18840
-13.99157 -13.61979 -13.40538 -12.94552 -12.30600 -12.02960 -11.77804 -11.22880
-10.80164 -10.72568 -10.52113 -10.45549 -10.15871 -10.02705 -9.66662 -9.32740
-8.71252 -8.32426 -8.11902 -7.42869 -6.13451 -3.83336 3.51059 3.51879
3.71188 4.58383 4.66002 5.23137 5.27932 5.38278 5.54416 5.64860
5.75056 5.83929 5.98531 6.08225 6.13995 6.28246 6.39376 6.43966
6.51142 6.64623 6.71691 7.02420 7.14781 7.24206 7.53557 8.09298
8.34116 8.45589 8.68192 8.75095 9.12698 9.87219 11.26937
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.032598 B = 0.013766 C = 0.011286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.747402 B = 2033.559215 C = 2480.428087
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.020 3.980
3 Si 1.060 2.940
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.292 1.292
7 C -0.586 4.586
8 H 0.050 0.950
9 C 0.036 3.964
10 H 0.052 0.948
11 C 0.078 3.922
12 N -0.840 5.840
13 C 0.109 3.891
14 H 0.024 0.976
15 C -0.137 4.137
16 C -0.123 4.123
17 C -0.152 4.152
18 C 0.058 3.942
19 O -0.363 6.363
20 H 0.283 0.717
21 H 0.026 0.974
22 H 0.014 0.986
23 H 0.310 0.690
24 H 0.354 0.646
25 H 0.059 0.941
26 H 0.087 0.913
27 H 0.051 0.949
28 H 0.057 0.943
29 H 0.059 0.941
30 H 0.069 0.931
31 H 0.036 0.964
32 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.731 -7.050 -2.708 9.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.186 4.186
3 Si 0.890 3.110
4 H -0.211 1.211
5 H -0.219 1.219
6 H -0.218 1.218
7 C -0.624 4.624
8 H 0.068 0.932
9 C 0.017 3.983
10 H 0.070 0.930
11 C -0.053 4.053
12 N -0.369 5.369
13 C 0.051 3.949
14 H 0.042 0.958
15 C -0.174 4.174
16 C -0.160 4.160
17 C -0.190 4.190
18 C -0.020 4.020
19 O -0.281 6.281
20 H 0.097 0.903
21 H 0.045 0.955
22 H 0.033 0.967
23 H 0.119 0.881
24 H 0.169 0.831
25 H 0.078 0.922
26 H 0.105 0.895
27 H 0.070 0.930
28 H 0.076 0.924
29 H 0.078 0.922
30 H 0.088 0.912
31 H 0.054 0.946
32 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 5.069 -5.376 -3.131 8.025
hybrid contribution 1.031 -1.900 0.362 2.192
sum 6.099 -7.276 -2.769 9.890
Atomic orbital electron populations
1.70684 1.06542 1.32133 1.44736 1.25641 0.96683 1.01906 0.94373
0.83670 0.74895 0.76120 0.76287 1.21145 1.21889 1.21849 1.21716
0.94496 0.90792 1.55435 0.93154 1.19034 0.95011 0.93638 0.90635
0.92982 1.21865 0.92500 0.93166 0.97812 1.58705 1.48255 1.07410
1.22549 1.22262 0.83912 0.96164 0.92589 0.95845 1.22058 0.99560
1.00140 0.95662 1.21635 0.96227 0.99550 0.98620 1.22143 0.98010
1.01718 0.97120 1.22421 0.94747 0.91950 0.92833 1.88072 1.29013
1.62170 1.48874 0.90330 0.95534 0.96748 0.88080 0.83063 0.92189
0.89484 0.92979 0.92412 0.92225 0.91199 0.94602 0.90154
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.44 12.93 55.43 0.72 -25.72 16
2 C 0.02 0.56 4.70 -17.82 -0.08 0.47 16
3 Si 1.06 25.16 29.91 -169.99 -5.08 20.08 16
4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16
5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
7 C -0.59 -15.91 6.22 -34.44 -0.21 -16.12 16
8 H 0.05 1.44 7.50 -52.48 -0.39 1.04 16
9 C 0.04 0.89 1.81 -91.78 -0.17 0.73 16
10 H 0.05 1.42 6.41 -51.93 -0.33 1.09 16
11 C 0.08 1.82 6.00 -3.82 -0.02 1.80 16
12 N -0.84 -19.27 8.54 -10.37 -0.09 -19.36 16
13 C 0.11 2.35 2.38 -26.69 -0.06 2.29 16
14 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
15 C -0.14 -2.74 5.21 -26.59 -0.14 -2.88 16
16 C -0.12 -1.97 6.03 -26.55 -0.16 -2.13 16
17 C -0.15 -2.31 6.14 -26.59 -0.16 -2.48 16
18 C 0.06 0.96 6.84 37.20 0.25 1.21 16
19 O -0.36 -7.77 9.24 -35.23 -0.33 -8.10 16
20 H 0.28 8.40 5.80 -40.82 -0.24 8.16 16
21 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16
22 H 0.01 0.35 7.84 -51.93 -0.41 -0.06 16
23 H 0.31 6.06 9.08 -39.29 -0.36 5.70 16
24 H 0.35 8.86 7.20 -39.29 -0.28 8.58 16
25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
26 H 0.09 1.97 7.14 -51.92 -0.37 1.60 16
27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
30 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16
31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
LS Contribution 251.50 15.07 3.79 3.79
Total: -1.00 -29.03 251.50 -6.73 -35.76
By element:
Atomic # 1 Polarization: 15.64 SS G_CDS: -4.98 Total: 10.66 kcal
Atomic # 6 Polarization: -16.35 SS G_CDS: -0.76 Total: -17.11 kcal
Atomic # 7 Polarization: -45.71 SS G_CDS: 0.63 Total: -45.08 kcal
Atomic # 8 Polarization: -7.77 SS G_CDS: -0.33 Total: -8.10 kcal
Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal
Total LS contribution 3.79 Total: 3.79 kcal
Total: -29.03 -6.73 -35.76 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261002537.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.434 kcal
(2) G-P(sol) polarization free energy of solvation -29.034 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds