Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47097 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46983 * 120.00297 * 3 2 1 6 6 H 1.48495 * 109.47498 * 240.00457 * 3 2 1 7 7 C 1.37879 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99859 * 185.29324 * 7 2 1 9 9 C 1.50691 * 119.99818 * 5.28788 * 7 2 1 10 10 H 1.09004 * 109.47670 * 24.41023 * 9 7 2 11 11 C 1.53003 * 109.47198 * 264.41146 * 9 7 2 12 12 N 1.46897 * 109.47135 * 64.94091 * 11 9 7 13 13 C 1.52998 * 109.47474 * 144.41377 * 9 7 2 14 14 H 1.08999 * 109.48760 * 179.97438 * 13 9 7 15 15 C 1.53091 * 109.47807 * 299.99973 * 13 9 7 16 16 C 1.53175 * 109.16526 * 177.58905 * 15 13 9 17 17 C 1.53179 * 109.03618 * 303.01969 * 16 15 13 18 18 C 1.53092 * 109.16642 * 56.97790 * 17 16 15 19 19 O 1.42901 * 109.41543 * 302.39577 * 18 17 16 20 20 H 0.96994 * 119.99895 * 177.70022 * 1 2 3 21 21 H 1.08994 * 109.47268 * 184.94366 * 11 9 7 22 22 H 1.09003 * 109.46828 * 304.94423 * 11 9 7 23 23 H 1.00902 * 110.99964 * 173.33579 * 12 11 9 24 24 H 1.00906 * 111.00091 * 297.28950 * 12 11 9 25 25 H 1.08998 * 109.52340 * 297.49614 * 15 13 9 26 26 H 1.09008 * 109.52457 * 57.62126 * 15 13 9 27 27 H 1.08997 * 109.54853 * 62.88387 * 16 15 13 28 28 H 1.09000 * 109.55006 * 183.06635 * 16 15 13 29 29 H 1.09001 * 109.52582 * 176.88809 * 17 16 15 30 30 H 1.09009 * 109.52262 * 297.01023 * 17 16 15 31 31 H 1.08997 * 109.47940 * 62.37116 * 18 17 16 32 32 H 1.09002 * 109.48300 * 182.39823 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0858 9 6 1.2560 -2.4962 -0.1214 10 1 0.3006 -2.3216 -0.6163 11 6 1.0094 -3.0742 1.2737 12 7 0.1174 -2.1798 2.0235 13 6 2.0833 -3.4858 -0.9443 14 1 1.5422 -4.4279 -1.0315 15 6 2.3301 -2.9077 -2.3403 16 6 3.2091 -3.8764 -3.1374 17 6 4.5122 -4.1164 -2.3689 18 6 4.1812 -4.6478 -0.9718 19 8 3.3364 -3.7139 -0.2963 20 1 -0.4850 -0.8393 -0.0337 21 1 0.5466 -4.0568 1.1833 22 1 1.9586 -3.1668 1.8015 23 1 -0.1480 -2.5906 2.9061 24 1 0.5430 -1.2750 2.1592 25 1 1.3775 -2.7743 -2.8529 26 1 2.8343 -1.9453 -2.2521 27 1 2.6835 -4.8223 -3.2683 28 1 3.4339 -3.4461 -4.1133 29 1 5.1202 -4.8474 -2.9020 30 1 5.0620 -3.1792 -2.2823 31 1 3.6676 -5.6051 -1.0593 32 1 5.1030 -4.7802 -0.4053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -68.198170 kcal Electronic energy + Delta-G solvation = -13690.402763 eV Core-core repulsion = 11456.951500 eV Total energy + Delta-G solvation = -2233.451263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.77541 -35.20128 -32.97831 -31.66062 -30.98626 -27.34680 -24.04397 -23.85102 -22.28307 -19.89961 -19.55552 -16.59967 -15.60739 -14.98696 -14.53534 -14.18840 -13.99157 -13.61979 -13.40538 -12.94552 -12.30600 -12.02960 -11.77804 -11.22880 -10.80164 -10.72568 -10.52113 -10.45549 -10.15871 -10.02705 -9.66662 -9.32740 -8.71252 -8.32426 -8.11902 -7.42869 -6.13451 -3.83336 3.51059 3.51879 3.71188 4.58383 4.66002 5.23137 5.27932 5.38278 5.54416 5.64860 5.75056 5.83929 5.98531 6.08225 6.13995 6.28246 6.39376 6.43966 6.51142 6.64623 6.71691 7.02420 7.14781 7.24206 7.53557 8.09298 8.34116 8.45589 8.68192 8.75095 9.12698 9.87219 11.26937 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.013766 C = 0.011286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.747402 B = 2033.559215 C = 2480.428087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 1.060 2.940 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.586 4.586 8 H 0.050 0.950 9 C 0.036 3.964 10 H 0.052 0.948 11 C 0.078 3.922 12 N -0.840 5.840 13 C 0.109 3.891 14 H 0.024 0.976 15 C -0.137 4.137 16 C -0.123 4.123 17 C -0.152 4.152 18 C 0.058 3.942 19 O -0.363 6.363 20 H 0.283 0.717 21 H 0.026 0.974 22 H 0.014 0.986 23 H 0.310 0.690 24 H 0.354 0.646 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -7.050 -2.708 9.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.186 4.186 3 Si 0.890 3.110 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.624 4.624 8 H 0.068 0.932 9 C 0.017 3.983 10 H 0.070 0.930 11 C -0.053 4.053 12 N -0.369 5.369 13 C 0.051 3.949 14 H 0.042 0.958 15 C -0.174 4.174 16 C -0.160 4.160 17 C -0.190 4.190 18 C -0.020 4.020 19 O -0.281 6.281 20 H 0.097 0.903 21 H 0.045 0.955 22 H 0.033 0.967 23 H 0.119 0.881 24 H 0.169 0.831 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.069 -5.376 -3.131 8.025 hybrid contribution 1.031 -1.900 0.362 2.192 sum 6.099 -7.276 -2.769 9.890 Atomic orbital electron populations 1.70684 1.06542 1.32133 1.44736 1.25641 0.96683 1.01906 0.94373 0.83670 0.74895 0.76120 0.76287 1.21145 1.21889 1.21849 1.21716 0.94496 0.90792 1.55435 0.93154 1.19034 0.95011 0.93638 0.90635 0.92982 1.21865 0.92500 0.93166 0.97812 1.58705 1.48255 1.07410 1.22549 1.22262 0.83912 0.96164 0.92589 0.95845 1.22058 0.99560 1.00140 0.95662 1.21635 0.96227 0.99550 0.98620 1.22143 0.98010 1.01718 0.97120 1.22421 0.94747 0.91950 0.92833 1.88072 1.29013 1.62170 1.48874 0.90330 0.95534 0.96748 0.88080 0.83063 0.92189 0.89484 0.92979 0.92412 0.92225 0.91199 0.94602 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 12.93 55.43 0.72 -25.72 16 2 C 0.02 0.56 4.70 -17.82 -0.08 0.47 16 3 Si 1.06 25.16 29.91 -169.99 -5.08 20.08 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.59 -15.91 6.22 -34.44 -0.21 -16.12 16 8 H 0.05 1.44 7.50 -52.48 -0.39 1.04 16 9 C 0.04 0.89 1.81 -91.78 -0.17 0.73 16 10 H 0.05 1.42 6.41 -51.93 -0.33 1.09 16 11 C 0.08 1.82 6.00 -3.82 -0.02 1.80 16 12 N -0.84 -19.27 8.54 -10.37 -0.09 -19.36 16 13 C 0.11 2.35 2.38 -26.69 -0.06 2.29 16 14 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 15 C -0.14 -2.74 5.21 -26.59 -0.14 -2.88 16 16 C -0.12 -1.97 6.03 -26.55 -0.16 -2.13 16 17 C -0.15 -2.31 6.14 -26.59 -0.16 -2.48 16 18 C 0.06 0.96 6.84 37.20 0.25 1.21 16 19 O -0.36 -7.77 9.24 -35.23 -0.33 -8.10 16 20 H 0.28 8.40 5.80 -40.82 -0.24 8.16 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.01 0.35 7.84 -51.93 -0.41 -0.06 16 23 H 0.31 6.06 9.08 -39.29 -0.36 5.70 16 24 H 0.35 8.86 7.20 -39.29 -0.28 8.58 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.97 7.14 -51.92 -0.37 1.60 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 251.50 15.07 3.79 3.79 Total: -1.00 -29.03 251.50 -6.73 -35.76 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.98 Total: 10.66 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.76 Total: -17.11 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.63 Total: -45.08 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.33 Total: -8.10 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.03 -6.73 -35.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.434 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds