Wall clock time and date at job start Mon Mar 30 2020 02:02:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86806 * 120.00017 * 2 1
4 4 H 1.48502 * 109.47097 * 0.02562 * 3 2 1
5 5 H 1.48495 * 109.46983 * 120.00297 * 3 2 1
6 6 H 1.48495 * 109.47498 * 240.00457 * 3 2 1
7 7 C 1.37879 * 120.00222 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99859 * 185.29324 * 7 2 1
9 9 C 1.50691 * 119.99818 * 5.28788 * 7 2 1
10 10 H 1.09004 * 109.47670 * 24.41023 * 9 7 2
11 11 C 1.53003 * 109.47198 * 264.41146 * 9 7 2
12 12 N 1.46897 * 109.47135 * 64.94091 * 11 9 7
13 13 C 1.52998 * 109.47474 * 144.41377 * 9 7 2
14 14 H 1.08999 * 109.48760 * 179.97438 * 13 9 7
15 15 C 1.53091 * 109.47807 * 299.99973 * 13 9 7
16 16 C 1.53175 * 109.16526 * 177.58905 * 15 13 9
17 17 C 1.53179 * 109.03618 * 303.01969 * 16 15 13
18 18 C 1.53092 * 109.16642 * 56.97790 * 17 16 15
19 19 O 1.42901 * 109.41543 * 302.39577 * 18 17 16
20 20 H 0.96994 * 119.99895 * 177.70022 * 1 2 3
21 21 H 1.08994 * 109.47268 * 184.94366 * 11 9 7
22 22 H 1.09003 * 109.46828 * 304.94423 * 11 9 7
23 23 H 1.00902 * 110.99964 * 173.33579 * 12 11 9
24 24 H 1.00906 * 111.00091 * 297.28950 * 12 11 9
25 25 H 1.08998 * 109.52340 * 297.49614 * 15 13 9
26 26 H 1.09008 * 109.52457 * 57.62126 * 15 13 9
27 27 H 1.08997 * 109.54853 * 62.88387 * 16 15 13
28 28 H 1.09000 * 109.55006 * 183.06635 * 16 15 13
29 29 H 1.09001 * 109.52582 * 176.88809 * 17 16 15
30 30 H 1.09009 * 109.52262 * 297.01023 * 17 16 15
31 31 H 1.08997 * 109.47940 * 62.37116 * 18 17 16
32 32 H 1.09002 * 109.48300 * 182.39823 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 1.2842 2.7465 0.0006
5 1 3.1030 1.6964 1.2124
6 1 3.1029 1.6966 -1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0812 -1.1960 0.0858
9 6 1.2560 -2.4962 -0.1214
10 1 0.3006 -2.3216 -0.6163
11 6 1.0094 -3.0742 1.2737
12 7 0.1174 -2.1798 2.0235
13 6 2.0833 -3.4858 -0.9443
14 1 1.5422 -4.4279 -1.0315
15 6 2.3301 -2.9077 -2.3403
16 6 3.2091 -3.8764 -3.1374
17 6 4.5122 -4.1164 -2.3689
18 6 4.1812 -4.6478 -0.9718
19 8 3.3364 -3.7139 -0.2963
20 1 -0.4850 -0.8393 -0.0337
21 1 0.5466 -4.0568 1.1833
22 1 1.9586 -3.1668 1.8015
23 1 -0.1480 -2.5906 2.9061
24 1 0.5430 -1.2750 2.1592
25 1 1.3775 -2.7743 -2.8529
26 1 2.8343 -1.9453 -2.2521
27 1 2.6835 -4.8223 -3.2683
28 1 3.4339 -3.4461 -4.1133
29 1 5.1202 -4.8474 -2.9020
30 1 5.0620 -3.1792 -2.2823
31 1 3.6676 -5.6051 -1.0593
32 1 5.1030 -4.7802 -0.4053
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261002537.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:02:00
Heat of formation + Delta-G solvation = -88.190530 kcal
Electronic energy + Delta-G solvation = -13691.269697 eV
Core-core repulsion = 11456.951500 eV
Total energy + Delta-G solvation = -2234.318197 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-40.33327 -37.07073 -34.43476 -33.67698 -32.65222 -29.05691 -26.05182 -25.40903
-23.83046 -21.80960 -21.01294 -18.54707 -17.18076 -16.78944 -16.21134 -15.83590
-15.56308 -15.42517 -14.92513 -14.61186 -14.06081 -13.78813 -13.44648 -12.83832
-12.58148 -12.35271 -12.24025 -11.98760 -11.89803 -11.77383 -11.29124 -11.06058
-10.40370 -10.35867 -10.05461 -9.30621 -8.33666 -6.02858 1.57446 1.63224
1.82990 2.66144 3.10464 3.42190 3.83873 3.98037 4.06940 4.11790
4.24087 4.34599 4.56750 4.57827 4.73956 4.74382 4.86608 4.95024
5.03211 5.06986 5.21643 5.27427 5.32718 5.56004 5.61503 6.28066
6.40457 6.54428 6.62503 6.89127 6.95968 7.72519 9.06106
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.032598 B = 0.013766 C = 0.011286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.747402 B = 2033.559215 C = 2480.428087
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C -0.022 4.022
3 Si 1.102 2.898
4 H -0.288 1.288
5 H -0.280 1.280
6 H -0.282 1.282
7 C -0.581 4.581
8 H 0.032 0.968
9 C 0.030 3.970
10 H 0.023 0.977
11 C 0.086 3.914
12 N -0.844 5.844
13 C 0.113 3.887
14 H 0.037 0.963
15 C -0.135 4.135
16 C -0.117 4.117
17 C -0.148 4.148
18 C 0.048 3.952
19 O -0.392 6.392
20 H 0.271 0.729
21 H 0.043 0.957
22 H 0.005 0.995
23 H 0.329 0.671
24 H 0.342 0.658
25 H 0.052 0.948
26 H 0.053 0.947
27 H 0.070 0.930
28 H 0.074 0.926
29 H 0.097 0.903
30 H 0.055 0.945
31 H 0.054 0.946
32 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.939 -8.153 -3.242 11.186
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.222 4.222
3 Si 0.928 3.072
4 H -0.214 1.214
5 H -0.206 1.206
6 H -0.208 1.208
7 C -0.619 4.619
8 H 0.050 0.950
9 C 0.011 3.989
10 H 0.041 0.959
11 C -0.046 4.046
12 N -0.374 5.374
13 C 0.055 3.945
14 H 0.055 0.945
15 C -0.173 4.173
16 C -0.154 4.154
17 C -0.186 4.186
18 C -0.029 4.029
19 O -0.312 6.312
20 H 0.084 0.916
21 H 0.062 0.938
22 H 0.023 0.977
23 H 0.141 0.859
24 H 0.156 0.844
25 H 0.070 0.930
26 H 0.072 0.928
27 H 0.089 0.911
28 H 0.093 0.907
29 H 0.115 0.885
30 H 0.074 0.926
31 H 0.072 0.928
32 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 6.285 -6.513 -3.659 9.763
hybrid contribution 0.679 -1.639 0.542 1.855
sum 6.964 -8.152 -3.117 11.165
Atomic orbital electron populations
1.70790 1.07255 1.31389 1.46954 1.26740 0.96738 1.04906 0.93859
0.83094 0.74121 0.72928 0.77094 1.21420 1.20578 1.20762 1.21775
0.93517 0.92108 1.54509 0.94967 1.19016 0.94078 0.94034 0.91800
0.95872 1.21727 0.92247 0.93806 0.96774 1.58666 1.47908 1.06879
1.23933 1.22030 0.84240 0.95780 0.92494 0.94536 1.21971 0.99790
0.99745 0.95752 1.21612 0.95967 0.99184 0.98680 1.22129 0.97782
1.02077 0.96573 1.22754 0.94817 0.91655 0.93636 1.88003 1.29170
1.63824 1.50165 0.91643 0.93820 0.97721 0.85920 0.84447 0.92970
0.92786 0.91150 0.90750 0.88461 0.92630 0.92818 0.88273
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.06 12.93 21.45 0.28 -54.79 16
2 C -0.02 -1.20 4.70 84.65 0.40 -0.81 16
3 Si 1.10 51.03 29.91 68.60 2.05 53.08 16
4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16
5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16
6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
7 C -0.58 -32.02 6.22 25.60 0.16 -31.86 16
8 H 0.03 1.86 7.50 -2.91 -0.02 1.84 16
9 C 0.03 1.50 1.81 -11.54 -0.02 1.48 16
10 H 0.02 1.30 6.41 -2.38 -0.02 1.28 16
11 C 0.09 3.99 6.00 86.30 0.52 4.51 16
12 N -0.84 -38.75 8.54 -186.72 -1.60 -40.35 16
13 C 0.11 4.82 2.38 30.62 0.07 4.89 16
14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
15 C -0.13 -5.36 5.21 30.68 0.16 -5.20 16
16 C -0.12 -3.44 6.03 30.71 0.19 -3.26 16
17 C -0.15 -4.03 6.14 30.68 0.19 -3.85 16
18 C 0.05 1.45 6.84 72.01 0.49 1.94 16
19 O -0.39 -16.38 9.24 -148.98 -1.38 -17.76 16
20 H 0.27 16.50 5.80 -92.71 -0.54 15.96 16
21 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
22 H 0.00 0.22 7.84 -2.39 -0.02 0.20 16
23 H 0.33 12.65 9.08 -89.69 -0.81 11.84 16
24 H 0.34 17.29 7.20 -89.69 -0.65 16.64 16
25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
26 H 0.05 2.47 7.14 -2.38 -0.02 2.46 16
27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
29 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16
30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16
31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16
Total: -1.00 -62.50 251.50 1.39 -61.12
By element:
Atomic # 1 Polarization: 30.98 SS G_CDS: -0.12 Total: 30.86 kcal
Atomic # 6 Polarization: -34.31 SS G_CDS: 2.15 Total: -32.15 kcal
Atomic # 7 Polarization: -93.82 SS G_CDS: -1.32 Total: -95.14 kcal
Atomic # 8 Polarization: -16.38 SS G_CDS: -1.38 Total: -17.76 kcal
Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal
Total: -62.50 1.39 -61.12 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261002537.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.074 kcal
(2) G-P(sol) polarization free energy of solvation -62.502 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.577 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.116 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.191 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds