Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47097 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46983 * 120.00297 * 3 2 1 6 6 H 1.48495 * 109.47498 * 240.00457 * 3 2 1 7 7 C 1.37879 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99859 * 185.29324 * 7 2 1 9 9 C 1.50691 * 119.99818 * 5.28788 * 7 2 1 10 10 H 1.09004 * 109.47670 * 24.41023 * 9 7 2 11 11 C 1.53003 * 109.47198 * 264.41146 * 9 7 2 12 12 N 1.46897 * 109.47135 * 64.94091 * 11 9 7 13 13 C 1.52998 * 109.47474 * 144.41377 * 9 7 2 14 14 H 1.08999 * 109.48760 * 179.97438 * 13 9 7 15 15 C 1.53091 * 109.47807 * 299.99973 * 13 9 7 16 16 C 1.53175 * 109.16526 * 177.58905 * 15 13 9 17 17 C 1.53179 * 109.03618 * 303.01969 * 16 15 13 18 18 C 1.53092 * 109.16642 * 56.97790 * 17 16 15 19 19 O 1.42901 * 109.41543 * 302.39577 * 18 17 16 20 20 H 0.96994 * 119.99895 * 177.70022 * 1 2 3 21 21 H 1.08994 * 109.47268 * 184.94366 * 11 9 7 22 22 H 1.09003 * 109.46828 * 304.94423 * 11 9 7 23 23 H 1.00902 * 110.99964 * 173.33579 * 12 11 9 24 24 H 1.00906 * 111.00091 * 297.28950 * 12 11 9 25 25 H 1.08998 * 109.52340 * 297.49614 * 15 13 9 26 26 H 1.09008 * 109.52457 * 57.62126 * 15 13 9 27 27 H 1.08997 * 109.54853 * 62.88387 * 16 15 13 28 28 H 1.09000 * 109.55006 * 183.06635 * 16 15 13 29 29 H 1.09001 * 109.52582 * 176.88809 * 17 16 15 30 30 H 1.09009 * 109.52262 * 297.01023 * 17 16 15 31 31 H 1.08997 * 109.47940 * 62.37116 * 18 17 16 32 32 H 1.09002 * 109.48300 * 182.39823 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6964 1.2124 6 1 3.1029 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0812 -1.1960 0.0858 9 6 1.2560 -2.4962 -0.1214 10 1 0.3006 -2.3216 -0.6163 11 6 1.0094 -3.0742 1.2737 12 7 0.1174 -2.1798 2.0235 13 6 2.0833 -3.4858 -0.9443 14 1 1.5422 -4.4279 -1.0315 15 6 2.3301 -2.9077 -2.3403 16 6 3.2091 -3.8764 -3.1374 17 6 4.5122 -4.1164 -2.3689 18 6 4.1812 -4.6478 -0.9718 19 8 3.3364 -3.7139 -0.2963 20 1 -0.4850 -0.8393 -0.0337 21 1 0.5466 -4.0568 1.1833 22 1 1.9586 -3.1668 1.8015 23 1 -0.1480 -2.5906 2.9061 24 1 0.5430 -1.2750 2.1592 25 1 1.3775 -2.7743 -2.8529 26 1 2.8343 -1.9453 -2.2521 27 1 2.6835 -4.8223 -3.2683 28 1 3.4339 -3.4461 -4.1133 29 1 5.1202 -4.8474 -2.9020 30 1 5.0620 -3.1792 -2.2823 31 1 3.6676 -5.6051 -1.0593 32 1 5.1030 -4.7802 -0.4053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002537.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -88.190530 kcal Electronic energy + Delta-G solvation = -13691.269697 eV Core-core repulsion = 11456.951500 eV Total energy + Delta-G solvation = -2234.318197 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33327 -37.07073 -34.43476 -33.67698 -32.65222 -29.05691 -26.05182 -25.40903 -23.83046 -21.80960 -21.01294 -18.54707 -17.18076 -16.78944 -16.21134 -15.83590 -15.56308 -15.42517 -14.92513 -14.61186 -14.06081 -13.78813 -13.44648 -12.83832 -12.58148 -12.35271 -12.24025 -11.98760 -11.89803 -11.77383 -11.29124 -11.06058 -10.40370 -10.35867 -10.05461 -9.30621 -8.33666 -6.02858 1.57446 1.63224 1.82990 2.66144 3.10464 3.42190 3.83873 3.98037 4.06940 4.11790 4.24087 4.34599 4.56750 4.57827 4.73956 4.74382 4.86608 4.95024 5.03211 5.06986 5.21643 5.27427 5.32718 5.56004 5.61503 6.28066 6.40457 6.54428 6.62503 6.89127 6.95968 7.72519 9.06106 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.013766 C = 0.011286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.747402 B = 2033.559215 C = 2480.428087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.022 4.022 3 Si 1.102 2.898 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.581 4.581 8 H 0.032 0.968 9 C 0.030 3.970 10 H 0.023 0.977 11 C 0.086 3.914 12 N -0.844 5.844 13 C 0.113 3.887 14 H 0.037 0.963 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.148 4.148 18 C 0.048 3.952 19 O -0.392 6.392 20 H 0.271 0.729 21 H 0.043 0.957 22 H 0.005 0.995 23 H 0.329 0.671 24 H 0.342 0.658 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -8.153 -3.242 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.222 4.222 3 Si 0.928 3.072 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.619 4.619 8 H 0.050 0.950 9 C 0.011 3.989 10 H 0.041 0.959 11 C -0.046 4.046 12 N -0.374 5.374 13 C 0.055 3.945 14 H 0.055 0.945 15 C -0.173 4.173 16 C -0.154 4.154 17 C -0.186 4.186 18 C -0.029 4.029 19 O -0.312 6.312 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.023 0.977 23 H 0.141 0.859 24 H 0.156 0.844 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.285 -6.513 -3.659 9.763 hybrid contribution 0.679 -1.639 0.542 1.855 sum 6.964 -8.152 -3.117 11.165 Atomic orbital electron populations 1.70790 1.07255 1.31389 1.46954 1.26740 0.96738 1.04906 0.93859 0.83094 0.74121 0.72928 0.77094 1.21420 1.20578 1.20762 1.21775 0.93517 0.92108 1.54509 0.94967 1.19016 0.94078 0.94034 0.91800 0.95872 1.21727 0.92247 0.93806 0.96774 1.58666 1.47908 1.06879 1.23933 1.22030 0.84240 0.95780 0.92494 0.94536 1.21971 0.99790 0.99745 0.95752 1.21612 0.95967 0.99184 0.98680 1.22129 0.97782 1.02077 0.96573 1.22754 0.94817 0.91655 0.93636 1.88003 1.29170 1.63824 1.50165 0.91643 0.93820 0.97721 0.85920 0.84447 0.92970 0.92786 0.91150 0.90750 0.88461 0.92630 0.92818 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 12.93 21.45 0.28 -54.79 16 2 C -0.02 -1.20 4.70 84.65 0.40 -0.81 16 3 Si 1.10 51.03 29.91 68.60 2.05 53.08 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.58 -32.02 6.22 25.60 0.16 -31.86 16 8 H 0.03 1.86 7.50 -2.91 -0.02 1.84 16 9 C 0.03 1.50 1.81 -11.54 -0.02 1.48 16 10 H 0.02 1.30 6.41 -2.38 -0.02 1.28 16 11 C 0.09 3.99 6.00 86.30 0.52 4.51 16 12 N -0.84 -38.75 8.54 -186.72 -1.60 -40.35 16 13 C 0.11 4.82 2.38 30.62 0.07 4.89 16 14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 15 C -0.13 -5.36 5.21 30.68 0.16 -5.20 16 16 C -0.12 -3.44 6.03 30.71 0.19 -3.26 16 17 C -0.15 -4.03 6.14 30.68 0.19 -3.85 16 18 C 0.05 1.45 6.84 72.01 0.49 1.94 16 19 O -0.39 -16.38 9.24 -148.98 -1.38 -17.76 16 20 H 0.27 16.50 5.80 -92.71 -0.54 15.96 16 21 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.00 0.22 7.84 -2.39 -0.02 0.20 16 23 H 0.33 12.65 9.08 -89.69 -0.81 11.84 16 24 H 0.34 17.29 7.20 -89.69 -0.65 16.64 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 2.47 7.14 -2.38 -0.02 2.46 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.50 251.50 1.39 -61.12 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.12 Total: 30.86 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 2.15 Total: -32.15 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -1.32 Total: -95.14 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -1.38 Total: -17.76 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -62.50 1.39 -61.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002537.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.074 kcal (2) G-P(sol) polarization free energy of solvation -62.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds