Wall clock time and date at job start Mon Mar 30 2020 02:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47012 * 111.00009 * 2 1 4 4 H 1.09002 * 109.50528 * 62.45880 * 3 2 1 5 5 C 1.50703 * 109.51024 * 302.32929 * 3 2 1 6 6 H 1.07996 * 119.99529 * 0.02562 * 5 3 2 7 7 C 1.37877 * 120.00090 * 179.97438 * 5 3 2 8 8 N 1.31516 * 120.00159 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00057 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.46880 * 90.00095 * 9 7 5 11 11 H 1.48496 * 109.47188 * 209.99876 * 9 7 5 12 12 H 1.48496 * 109.47321 * 330.00577 * 9 7 5 13 13 C 1.53100 * 109.25893 * 182.39209 * 3 2 1 14 14 O 1.43009 * 109.25927 * 303.15362 * 13 3 2 15 15 C 1.43020 * 113.73745 * 58.67023 * 14 13 3 16 16 C 1.47009 * 111.00252 * 123.63821 * 2 1 3 17 17 C 1.53004 * 109.50452 * 297.54236 * 16 2 1 18 18 C 1.53005 * 109.50490 * 57.67009 * 16 2 1 19 19 H 1.09001 * 109.46544 * 296.36208 * 1 2 3 20 20 H 1.09001 * 109.47272 * 56.35814 * 1 2 3 21 21 H 1.09000 * 109.47033 * 176.36263 * 1 2 3 22 22 H 0.96994 * 120.00257 * 179.97438 * 8 7 5 23 23 H 1.08997 * 109.50885 * 183.21907 * 13 3 2 24 24 H 1.09000 * 109.54071 * 63.11161 * 13 3 2 25 25 H 1.09007 * 109.50500 * 181.39505 * 15 14 13 26 26 H 1.09002 * 109.54203 * 61.28556 * 15 14 13 27 27 H 1.08996 * 109.47335 * 60.00076 * 17 16 2 28 28 H 1.09004 * 109.47019 * 179.97438 * 17 16 2 29 29 H 1.08990 * 109.47211 * 299.99517 * 17 16 2 30 30 H 1.09002 * 109.47025 * 60.00333 * 18 16 2 31 31 H 1.08998 * 109.46831 * 179.97438 * 18 16 2 32 32 H 1.08997 * 109.47220 * 299.99983 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 1 1.6828 1.8825 0.9110 5 6 1.4671 2.1146 -1.2003 6 1 0.8054 1.6174 -1.8940 7 6 1.8272 3.4285 -1.4121 8 7 1.3653 4.0763 -2.4593 9 14 2.9700 4.2891 -0.2110 10 1 4.3780 4.0937 -0.6408 11 1 2.6577 5.7406 -0.1839 12 1 2.7830 3.7171 1.1466 13 6 3.5250 1.3264 -0.0603 14 8 4.0176 0.5574 1.0402 15 6 3.5250 -0.7850 1.0708 16 6 1.9960 -0.7603 1.1426 17 6 1.5565 -0.0922 2.4470 18 6 1.4590 -2.1922 1.0948 19 1 -0.3632 0.4563 0.9208 20 1 -0.3634 0.5693 -0.8555 21 1 -0.3633 -1.0256 -0.0652 22 1 1.6183 5.0008 -2.6082 23 1 3.9223 2.3398 -0.0029 24 1 3.8392 0.8648 -0.9965 25 1 3.9223 -1.2986 1.9464 26 1 3.8386 -1.3090 0.1679 27 1 0.4678 -0.0715 2.4958 28 1 1.9470 -0.6566 3.2939 29 1 1.9412 0.9270 2.4808 30 1 1.7744 -2.6676 0.1660 31 1 1.8504 -2.7554 1.9419 32 1 0.3702 -2.1737 1.1421 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261005947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:51 Heat of formation + Delta-G solvation = -29.063165 kcal Electronic energy + Delta-G solvation = -14056.425629 eV Core-core repulsion = 11824.671387 eV Total energy + Delta-G solvation = -2231.754242 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.56312 -35.50888 -33.72438 -31.63372 -28.71251 -27.03038 -26.42533 -25.16302 -22.95502 -20.97187 -17.96613 -17.00750 -15.86204 -15.71910 -14.90316 -14.25610 -14.10583 -13.48865 -13.13444 -12.75085 -12.52634 -12.39157 -11.84636 -11.53307 -11.50027 -11.05612 -10.86869 -10.73497 -10.46425 -10.35111 -9.86380 -9.62806 -9.26805 -8.83897 -8.50525 -7.36326 -6.15247 -4.14881 3.20850 3.32539 3.35614 4.30999 4.54238 4.63664 5.12091 5.19864 5.41572 5.49233 5.83217 5.84309 5.88666 6.02107 6.07396 6.19884 6.22759 6.33525 6.36196 6.38703 6.43180 6.54879 6.63057 6.86978 7.12364 7.35040 7.85961 7.88146 8.01155 8.57996 8.91585 9.45183 10.97078 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043692 B = 0.014885 C = 0.012664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.699952 B = 1880.609721 C = 2210.405055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.516 5.516 3 C 0.155 3.845 4 H 0.012 0.988 5 C -0.508 4.508 6 H 0.086 0.914 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.871 3.129 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.263 1.263 13 C 0.057 3.943 14 O -0.399 6.399 15 C 0.080 3.920 16 C 0.063 3.937 17 C -0.174 4.174 18 C -0.135 4.135 19 H 0.016 0.984 20 H 0.082 0.918 21 H 0.051 0.949 22 H 0.266 0.734 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -8.739 7.564 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.240 5.240 3 C 0.047 3.953 4 H 0.030 0.970 5 C -0.546 4.546 6 H 0.104 0.896 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.188 1.188 13 C -0.019 4.019 14 O -0.318 6.318 15 C 0.002 3.998 16 C -0.028 4.028 17 C -0.233 4.233 18 C -0.193 4.193 19 H 0.035 0.965 20 H 0.101 0.899 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.723 -8.712 7.154 11.404 hybrid contribution 0.166 0.967 1.087 1.464 sum 1.889 -7.745 8.241 11.466 Atomic orbital electron populations 1.22329 0.88056 1.00019 1.01246 1.62335 1.07768 1.15614 1.38323 1.20316 0.91279 0.85805 0.97863 0.97045 1.20915 1.29844 0.95798 1.08062 0.89609 1.24917 0.95872 0.97100 0.95058 1.69857 1.44607 1.11212 1.27472 0.87108 0.81346 0.78760 0.82774 1.20065 1.21799 1.18795 1.23380 0.96011 0.94175 0.88316 1.87855 1.70351 1.23497 1.50082 1.22518 0.91696 0.84614 1.00967 1.21745 0.96021 0.94663 0.90373 1.22362 1.01088 1.02149 0.97655 1.21802 1.01101 0.94838 1.01513 0.96513 0.89916 0.93042 0.92408 0.90555 0.92384 0.89844 0.92972 0.92729 0.93022 0.91697 0.91979 0.92862 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.55 60.07 0.51 1.13 16 2 N -0.52 -10.86 4.55 -220.31 -1.00 -11.87 16 3 C 0.16 3.76 1.16 -68.75 -0.08 3.68 16 4 H 0.01 0.31 5.44 -51.93 -0.28 0.03 16 5 C -0.51 -14.10 8.47 -34.44 -0.29 -14.39 16 6 H 0.09 2.57 6.77 -52.49 -0.36 2.21 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 9 Si 0.87 21.65 24.35 -169.99 -4.14 17.51 16 10 H -0.27 -6.62 6.90 56.52 0.39 -6.23 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 13 C 0.06 1.34 5.74 37.21 0.21 1.55 16 14 O -0.40 -8.48 10.28 -35.23 -0.36 -8.85 16 15 C 0.08 1.39 5.70 37.21 0.21 1.61 16 16 C 0.06 1.10 0.68 -131.49 -0.09 1.01 16 17 C -0.17 -2.95 7.68 37.16 0.29 -2.67 16 18 C -0.13 -1.89 8.18 37.16 0.30 -1.59 16 19 H 0.02 0.31 6.37 -51.93 -0.33 -0.02 16 20 H 0.08 1.78 6.21 -51.93 -0.32 1.46 16 21 H 0.05 0.85 6.27 -51.93 -0.33 0.52 16 22 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.08 1.85 3.40 -51.93 -0.18 1.67 16 24 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.89 6.46 -51.93 -0.34 0.55 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.28 6.07 -51.93 -0.31 0.96 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 LS Contribution 235.79 15.07 3.55 3.55 Total: -1.00 -29.63 235.79 -4.70 -34.33 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.49 Total: -0.92 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 0.97 Total: -7.69 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.23 Total: -37.93 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.36 Total: -8.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.63 -4.70 -34.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.262 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds