Wall clock time and date at job start Mon Mar 30 2020 02:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47012 * 111.00009 * 2 1 4 4 H 1.09002 * 109.50528 * 62.45880 * 3 2 1 5 5 C 1.50703 * 109.51024 * 302.32929 * 3 2 1 6 6 H 1.07996 * 119.99529 * 0.02562 * 5 3 2 7 7 C 1.37877 * 120.00090 * 179.97438 * 5 3 2 8 8 N 1.31516 * 120.00159 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00057 * 359.97438 * 7 5 3 10 10 H 1.48508 * 109.46880 * 90.00095 * 9 7 5 11 11 H 1.48496 * 109.47188 * 209.99876 * 9 7 5 12 12 H 1.48496 * 109.47321 * 330.00577 * 9 7 5 13 13 C 1.53100 * 109.25893 * 182.39209 * 3 2 1 14 14 O 1.43009 * 109.25927 * 303.15362 * 13 3 2 15 15 C 1.43020 * 113.73745 * 58.67023 * 14 13 3 16 16 C 1.47009 * 111.00252 * 123.63821 * 2 1 3 17 17 C 1.53004 * 109.50452 * 297.54236 * 16 2 1 18 18 C 1.53005 * 109.50490 * 57.67009 * 16 2 1 19 19 H 1.09001 * 109.46544 * 296.36208 * 1 2 3 20 20 H 1.09001 * 109.47272 * 56.35814 * 1 2 3 21 21 H 1.09000 * 109.47033 * 176.36263 * 1 2 3 22 22 H 0.96994 * 120.00257 * 179.97438 * 8 7 5 23 23 H 1.08997 * 109.50885 * 183.21907 * 13 3 2 24 24 H 1.09000 * 109.54071 * 63.11161 * 13 3 2 25 25 H 1.09007 * 109.50500 * 181.39505 * 15 14 13 26 26 H 1.09002 * 109.54203 * 61.28556 * 15 14 13 27 27 H 1.08996 * 109.47335 * 60.00076 * 17 16 2 28 28 H 1.09004 * 109.47019 * 179.97438 * 17 16 2 29 29 H 1.08990 * 109.47211 * 299.99517 * 17 16 2 30 30 H 1.09002 * 109.47025 * 60.00333 * 18 16 2 31 31 H 1.08998 * 109.46831 * 179.97438 * 18 16 2 32 32 H 1.08997 * 109.47220 * 299.99983 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 1 1.6828 1.8825 0.9110 5 6 1.4671 2.1146 -1.2003 6 1 0.8054 1.6174 -1.8940 7 6 1.8272 3.4285 -1.4121 8 7 1.3653 4.0763 -2.4593 9 14 2.9700 4.2891 -0.2110 10 1 4.3780 4.0937 -0.6408 11 1 2.6577 5.7406 -0.1839 12 1 2.7830 3.7171 1.1466 13 6 3.5250 1.3264 -0.0603 14 8 4.0176 0.5574 1.0402 15 6 3.5250 -0.7850 1.0708 16 6 1.9960 -0.7603 1.1426 17 6 1.5565 -0.0922 2.4470 18 6 1.4590 -2.1922 1.0948 19 1 -0.3632 0.4563 0.9208 20 1 -0.3634 0.5693 -0.8555 21 1 -0.3633 -1.0256 -0.0652 22 1 1.6183 5.0008 -2.6082 23 1 3.9223 2.3398 -0.0029 24 1 3.8392 0.8648 -0.9965 25 1 3.9223 -1.2986 1.9464 26 1 3.8386 -1.3090 0.1679 27 1 0.4678 -0.0715 2.4958 28 1 1.9470 -0.6566 3.2939 29 1 1.9412 0.9270 2.4808 30 1 1.7744 -2.6676 0.1660 31 1 1.8504 -2.7554 1.9419 32 1 0.3702 -2.1737 1.1421 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:50 Heat of formation + Delta-G solvation = -51.869709 kcal Electronic energy + Delta-G solvation = -14057.414595 eV Core-core repulsion = 11824.671387 eV Total energy + Delta-G solvation = -2232.743208 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.13986 -37.09929 -35.60632 -33.52892 -30.45676 -28.26920 -27.87102 -27.09310 -24.59572 -22.77535 -19.52414 -19.04346 -17.60550 -17.34498 -16.48538 -16.00642 -15.80181 -15.19591 -14.76505 -14.46838 -14.18601 -13.82176 -13.34632 -13.16473 -12.90078 -12.72063 -12.40954 -12.30278 -12.10025 -12.01358 -11.71552 -11.37774 -11.13624 -10.86135 -10.32753 -9.01949 -8.35870 -6.39408 1.22981 1.29485 1.38205 2.22708 2.91111 2.98414 3.12402 3.85605 4.08617 4.12200 4.26768 4.34798 4.48033 4.62230 4.68367 4.72961 4.74861 4.82909 4.92308 5.00546 5.05081 5.08463 5.14383 5.31005 5.39809 5.51143 5.96389 6.17915 6.33786 6.63696 6.68839 7.24649 8.80024 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043692 B = 0.014885 C = 0.012664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.699952 B = 1880.609721 C = 2210.405055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.530 5.530 3 C 0.162 3.838 4 H -0.002 1.002 5 C -0.509 4.509 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.938 5.938 9 Si 0.929 3.071 10 H -0.261 1.261 11 H -0.287 1.287 12 H -0.258 1.258 13 C 0.065 3.935 14 O -0.405 6.405 15 C 0.069 3.931 16 C 0.055 3.945 17 C -0.169 4.169 18 C -0.128 4.128 19 H 0.019 0.981 20 H 0.049 0.951 21 H 0.085 0.915 22 H 0.269 0.731 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.123 0.877 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -10.440 9.573 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.054 3.946 4 H 0.015 0.985 5 C -0.547 4.547 6 H 0.068 0.932 7 C -0.176 4.176 8 N -0.578 5.578 9 Si 0.756 3.244 10 H -0.186 1.186 11 H -0.214 1.214 12 H -0.183 1.183 13 C -0.012 4.012 14 O -0.324 6.324 15 C -0.007 4.007 16 C -0.035 4.035 17 C -0.228 4.228 18 C -0.185 4.185 19 H 0.037 0.963 20 H 0.068 0.932 21 H 0.103 0.897 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.141 0.859 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.593 -10.442 9.175 14.140 hybrid contribution -0.165 1.373 0.456 1.456 sum 2.428 -9.069 9.631 13.450 Atomic orbital electron populations 1.22271 0.87465 1.01536 0.99842 1.62291 1.08485 1.13790 1.40948 1.20055 0.92057 0.87368 0.95147 0.98506 1.21109 1.28937 0.96150 1.08547 0.93177 1.25651 0.97448 0.97885 0.96615 1.69986 1.46478 1.11778 1.29515 0.86149 0.79953 0.77574 0.80708 1.18636 1.21407 1.18287 1.23057 0.94996 0.94254 0.88887 1.87837 1.70454 1.25246 1.48899 1.22912 0.91852 0.82917 1.03056 1.22000 0.96124 0.96203 0.89123 1.22315 1.01299 1.00638 0.98529 1.21767 1.01414 0.92314 1.03003 0.96286 0.93217 0.89704 0.92188 0.91508 0.93079 0.85928 0.92581 0.92434 0.89864 0.94889 0.91989 0.89642 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 8.55 127.69 1.09 2.50 16 2 N -0.53 -21.81 4.55 -850.93 -3.87 -25.68 16 3 C 0.16 7.87 1.16 44.18 0.05 7.92 16 4 H 0.00 -0.13 5.44 -2.39 -0.01 -0.14 16 5 C -0.51 -29.10 8.47 25.60 0.22 -28.88 16 6 H 0.05 3.16 6.77 -2.91 -0.02 3.14 16 7 C 0.02 1.32 5.45 84.65 0.46 1.78 16 8 N -0.94 -57.92 13.96 21.45 0.30 -57.62 16 9 Si 0.93 45.08 24.35 68.60 1.67 46.75 16 10 H -0.26 -12.00 6.90 99.48 0.69 -11.31 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.26 -12.23 6.53 99.48 0.65 -11.58 16 13 C 0.06 2.97 5.74 72.02 0.41 3.39 16 14 O -0.41 -16.33 10.28 -148.98 -1.53 -17.86 16 15 C 0.07 2.18 5.70 72.01 0.41 2.59 16 16 C 0.06 1.77 0.68 3.54 0.00 1.77 16 17 C -0.17 -5.23 7.68 71.98 0.55 -4.68 16 18 C -0.13 -3.01 8.18 71.98 0.59 -2.42 16 19 H 0.02 0.70 6.37 -2.39 -0.02 0.69 16 20 H 0.05 2.21 6.21 -2.39 -0.01 2.19 16 21 H 0.08 2.63 6.27 -2.39 -0.01 2.62 16 22 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 23 H 0.07 3.17 3.40 -2.39 -0.01 3.16 16 24 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.12 2.94 8.14 -2.38 -0.02 2.92 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.72 6.46 -2.39 -0.02 1.70 16 28 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.03 1.22 6.07 -2.39 -0.01 1.21 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.44 6.37 -2.39 -0.02 1.43 16 Total: -1.00 -64.96 235.79 1.38 -63.58 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.02 Total: 6.87 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 3.79 Total: -16.03 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.57 Total: -83.31 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.53 Total: -17.86 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -64.96 1.38 -63.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.710 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds