Wall clock time and date at job start Mon Mar 30 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48504 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47265 * 300.00211 * 3 2 1 6 6 H 1.48496 * 109.46921 * 60.00669 * 3 2 1 7 7 C 1.37879 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00334 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47604 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00059 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.04407 * 328.98504 * 11 10 9 13 13 C 1.54517 * 109.05339 * 209.99753 * 11 10 9 14 14 C 1.50467 * 108.85730 * 162.35106 * 13 11 10 15 15 C 1.54293 * 113.03619 * 92.14960 * 14 13 11 16 16 C 1.54063 * 112.28808 * 318.30172 * 15 14 13 17 17 N 1.44273 * 111.97731 * 318.91157 * 16 15 14 18 18 C 1.45857 * 109.00190 * 87.95441 * 11 10 9 19 19 H 0.96995 * 120.00222 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47023 * 59.99771 * 9 7 2 21 21 H 1.09006 * 109.46687 * 300.00516 * 9 7 2 22 22 H 1.08999 * 109.57094 * 282.16436 * 13 11 10 23 23 H 1.08998 * 109.57511 * 42.54327 * 13 11 10 24 24 H 1.09000 * 108.77172 * 213.06784 * 14 13 11 25 25 H 1.09001 * 108.76578 * 331.23663 * 14 13 11 26 26 H 1.08994 * 108.92010 * 197.57623 * 15 14 13 27 27 H 1.08996 * 108.84314 * 78.97127 * 15 14 13 28 28 H 1.09005 * 108.98098 * 198.27535 * 16 15 14 29 29 H 1.08997 * 108.91323 * 79.51250 * 16 15 14 30 30 H 1.00896 * 111.00188 * 219.31108 * 17 16 15 31 31 H 1.09001 * 108.79038 * 302.70824 * 18 11 10 32 32 H 1.08996 * 108.79660 * 60.93387 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 1 0.6147 -4.8169 0.5295 13 6 2.4897 -5.8750 0.7291 14 6 1.6879 -7.0897 1.1107 15 6 1.7356 -8.2040 0.0446 16 6 1.6204 -7.6478 -1.3875 17 7 0.6405 -6.5930 -1.4799 18 6 1.3168 -5.2826 -1.3795 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.3049 -6.1685 0.0677 23 1 2.8953 -5.4085 1.6268 24 1 2.0760 -7.4855 2.0493 25 1 0.6502 -6.7920 1.2607 26 1 0.9138 -8.8978 0.2214 27 1 2.6786 -8.7423 0.1398 28 1 1.3349 -8.4567 -2.0601 29 1 2.5910 -7.2579 -1.6942 30 1 0.1134 -6.6632 -2.3373 31 1 0.6946 -4.5286 -1.8617 32 1 2.2694 -5.3378 -1.9064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:35 Heat of formation + Delta-G solvation = -57.887398 kcal Electronic energy + Delta-G solvation = -13078.947949 eV Core-core repulsion = 10845.943794 eV Total energy + Delta-G solvation = -2233.004155 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.93181 -36.07546 -33.05507 -32.72790 -30.78645 -27.15339 -25.38455 -24.37316 -22.26760 -20.28232 -19.45941 -16.84845 -16.26892 -15.71500 -14.88155 -14.55640 -14.31355 -13.74143 -13.44065 -13.13792 -12.53313 -12.22139 -11.95440 -11.36675 -11.22700 -10.97037 -10.74225 -10.58083 -10.48188 -10.23358 -10.15554 -9.69542 -9.06227 -8.88610 -8.38753 -8.09101 -6.09929 -4.11671 3.29562 3.35952 3.42489 4.19234 4.41542 4.94112 5.00216 5.17744 5.24907 5.26437 5.47153 5.54447 5.71366 5.76265 5.86405 5.99347 6.06924 6.17820 6.37009 6.39263 6.57167 6.67793 6.71934 7.08048 7.22732 7.45923 7.54711 7.81593 8.17831 8.62260 9.02852 9.53321 11.01574 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.074298 B = 0.007119 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.771742 B = 3932.005838 C = 4054.888386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.393 6.393 11 C 0.093 3.907 12 H 0.055 0.945 13 C -0.110 4.110 14 C -0.108 4.108 15 C -0.110 4.110 16 C 0.057 3.943 17 N -0.678 5.678 18 C 0.038 3.962 19 H 0.263 0.737 20 H 0.004 0.996 21 H 0.006 0.994 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.343 0.657 31 H 0.071 0.929 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -13.510 -1.635 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.312 6.312 11 C 0.034 3.966 12 H 0.073 0.927 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.074 4.074 17 N -0.310 5.310 18 C -0.091 4.091 19 H 0.073 0.927 20 H 0.022 0.978 21 H 0.024 0.976 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.888 -13.361 -0.957 13.527 hybrid contribution 0.415 0.954 -0.938 1.400 sum 2.304 -12.407 -1.894 12.761 Atomic orbital electron populations 1.69972 1.06098 1.27031 1.50634 1.24954 0.94969 0.99428 0.95173 0.86296 0.80032 0.82640 0.77629 1.19490 1.20854 1.20807 1.21117 0.94089 0.89427 1.50674 0.91539 1.20241 0.88745 0.83625 0.95337 1.87911 1.35574 1.12842 1.94887 1.20739 0.96032 0.85507 0.94288 0.92733 1.21373 0.98014 0.94745 1.00656 1.21122 1.01263 0.94935 0.97231 1.21963 1.00671 0.97629 0.94535 1.21735 0.94547 0.94149 0.96928 1.59753 1.26404 1.02377 1.42489 1.21402 0.97802 0.90588 0.99282 0.92712 0.97805 0.97640 0.92275 0.91262 0.92869 0.91497 0.92305 0.92622 0.92566 0.94270 0.83986 0.91085 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.19 5.44 5.44 36.00 0.20 5.64 16 10 O -0.39 -9.74 9.91 -35.23 -0.35 -10.09 16 11 C 0.09 1.84 2.37 -29.31 -0.07 1.77 16 12 H 0.05 1.13 7.22 -51.93 -0.37 0.76 16 13 C -0.11 -1.82 5.24 -27.20 -0.14 -1.96 16 14 C -0.11 -1.49 5.42 -27.32 -0.15 -1.63 16 15 C -0.11 -1.29 6.14 -25.50 -0.16 -1.45 16 16 C 0.06 0.69 5.89 -4.67 -0.03 0.66 16 17 N -0.68 -9.51 6.40 -118.15 -0.76 -10.27 16 18 C 0.04 0.66 5.31 -6.70 -0.04 0.62 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.00 0.12 7.45 -51.93 -0.39 -0.27 16 21 H 0.01 0.17 8.08 -51.93 -0.42 -0.25 16 22 H 0.06 0.94 7.15 -51.93 -0.37 0.57 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.00 7.38 -51.93 -0.38 0.62 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.50 6.50 -51.93 -0.34 0.17 16 30 H 0.34 4.09 8.89 -39.29 -0.35 3.74 16 31 H 0.07 1.33 7.40 -51.93 -0.38 0.95 16 32 H 0.04 0.69 7.24 -51.93 -0.38 0.32 16 LS Contribution 255.31 15.07 3.85 3.85 Total: -1.00 -31.00 255.31 -7.39 -38.40 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.04 Total: -1.94 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.81 Total: -10.52 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.02 Total: -36.69 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.35 Total: -10.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.00 -7.39 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.492 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds