Wall clock time and date at job start Mon Mar 30 2020 02:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48504 * 109.46989 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47265 * 300.00211 * 3 2 1 6 6 H 1.48496 * 109.46921 * 60.00669 * 3 2 1 7 7 C 1.37879 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00334 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47604 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00059 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.04407 * 328.98504 * 11 10 9 13 13 C 1.54517 * 109.05339 * 209.99753 * 11 10 9 14 14 C 1.50467 * 108.85730 * 162.35106 * 13 11 10 15 15 C 1.54293 * 113.03619 * 92.14960 * 14 13 11 16 16 C 1.54063 * 112.28808 * 318.30172 * 15 14 13 17 17 N 1.44273 * 111.97731 * 318.91157 * 16 15 14 18 18 C 1.45857 * 109.00190 * 87.95441 * 11 10 9 19 19 H 0.96995 * 120.00222 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47023 * 59.99771 * 9 7 2 21 21 H 1.09006 * 109.46687 * 300.00516 * 9 7 2 22 22 H 1.08999 * 109.57094 * 282.16436 * 13 11 10 23 23 H 1.08998 * 109.57511 * 42.54327 * 13 11 10 24 24 H 1.09000 * 108.77172 * 213.06784 * 14 13 11 25 25 H 1.09001 * 108.76578 * 331.23663 * 14 13 11 26 26 H 1.08994 * 108.92010 * 197.57623 * 15 14 13 27 27 H 1.08996 * 108.84314 * 78.97127 * 15 14 13 28 28 H 1.09005 * 108.98098 * 198.27535 * 16 15 14 29 29 H 1.08997 * 108.91323 * 79.51250 * 16 15 14 30 30 H 1.00896 * 111.00188 * 219.31108 * 17 16 15 31 31 H 1.09001 * 108.79038 * 302.70824 * 18 11 10 32 32 H 1.08996 * 108.79660 * 60.93387 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 1 0.6147 -4.8169 0.5295 13 6 2.4897 -5.8750 0.7291 14 6 1.6879 -7.0897 1.1107 15 6 1.7356 -8.2040 0.0446 16 6 1.6204 -7.6478 -1.3875 17 7 0.6405 -6.5930 -1.4799 18 6 1.3168 -5.2826 -1.3795 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 3.3049 -6.1685 0.0677 23 1 2.8953 -5.4085 1.6268 24 1 2.0760 -7.4855 2.0493 25 1 0.6502 -6.7920 1.2607 26 1 0.9138 -8.8978 0.2214 27 1 2.6786 -8.7423 0.1398 28 1 1.3349 -8.4567 -2.0601 29 1 2.5910 -7.2579 -1.6942 30 1 0.1134 -6.6632 -2.3373 31 1 0.6946 -4.5286 -1.8617 32 1 2.2694 -5.3378 -1.9064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:35 Heat of formation + Delta-G solvation = -80.233500 kcal Electronic energy + Delta-G solvation = -13079.916949 eV Core-core repulsion = 10845.943794 eV Total energy + Delta-G solvation = -2233.973154 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.38166 -37.74279 -34.98546 -34.18826 -32.25077 -29.30097 -26.67002 -25.71511 -24.37347 -21.77094 -20.56210 -18.73719 -17.99114 -17.38435 -16.52137 -16.27521 -15.72299 -15.18865 -14.90575 -14.62512 -14.34484 -13.83345 -13.30829 -13.03057 -12.91597 -12.77216 -12.34297 -12.23508 -11.88893 -11.64182 -11.48876 -11.25945 -11.15596 -10.90280 -10.27543 -9.48564 -8.34373 -6.47670 1.38730 1.40560 1.55318 2.32590 2.86971 2.99051 3.50682 3.77416 3.98309 4.10034 4.21562 4.34254 4.48909 4.51871 4.64466 4.71965 4.79400 4.89372 5.02029 5.07947 5.12549 5.27980 5.30149 5.41964 5.46298 5.53244 5.92077 5.98952 6.51784 6.53067 6.80660 7.24736 8.78282 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.074298 B = 0.007119 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.771742 B = 3932.005838 C = 4054.888386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.212 3.788 10 O -0.408 6.408 11 C 0.085 3.915 12 H 0.037 0.963 13 C -0.102 4.102 14 C -0.106 4.106 15 C -0.107 4.107 16 C 0.051 3.949 17 N -0.678 5.678 18 C 0.048 3.952 19 H 0.272 0.728 20 H -0.014 1.014 21 H -0.019 1.019 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.356 0.644 31 H 0.048 0.952 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -14.228 -1.867 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.080 0.920 9 C 0.137 3.863 10 O -0.327 6.327 11 C 0.027 3.973 12 H 0.055 0.945 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.145 4.145 16 C -0.079 4.079 17 N -0.311 5.311 18 C -0.081 4.081 19 H 0.080 0.920 20 H 0.004 0.996 21 H -0.001 1.001 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.175 0.825 31 H 0.066 0.934 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.738 -14.116 -1.196 14.429 hybrid contribution 0.102 1.088 -0.858 1.389 sum 2.839 -13.028 -2.054 13.491 Atomic orbital electron populations 1.70080 1.07832 1.28685 1.50376 1.26002 0.95983 1.03494 0.93774 0.85104 0.78617 0.77098 0.78381 1.18798 1.19495 1.19530 1.21436 0.94116 0.90847 1.52443 0.91997 1.19828 0.88535 0.84676 0.93223 1.87858 1.35575 1.14234 1.95024 1.21100 0.96043 0.84042 0.96149 0.94496 1.21353 0.97934 0.94840 0.99869 1.21106 0.99697 0.94422 0.99121 1.21985 1.02416 0.96913 0.93228 1.21880 0.93788 0.94176 0.98054 1.59694 1.26752 1.01091 1.43557 1.21135 0.97670 0.92058 0.97271 0.91960 0.99615 1.00096 0.91289 0.92300 0.90890 0.93137 0.90963 0.90543 0.89586 0.94756 0.82472 0.93385 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.99 44.98 29.54 68.60 2.03 47.01 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -33.74 9.43 25.60 0.24 -33.50 16 8 H 0.06 3.75 7.81 -2.91 -0.02 3.73 16 9 C 0.21 12.43 5.44 71.24 0.39 12.82 16 10 O -0.41 -20.99 9.91 -148.98 -1.48 -22.47 16 11 C 0.08 3.44 2.37 28.92 0.07 3.51 16 12 H 0.04 1.61 7.22 -2.39 -0.02 1.59 16 13 C -0.10 -3.33 5.24 30.29 0.16 -3.17 16 14 C -0.11 -2.74 5.42 30.21 0.16 -2.58 16 15 C -0.11 -2.19 6.14 31.39 0.19 -1.99 16 16 C 0.05 1.10 5.89 87.15 0.51 1.61 16 17 N -0.68 -18.21 6.40 -527.70 -3.38 -21.59 16 18 C 0.05 1.69 5.31 83.94 0.45 2.14 16 19 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 20 H -0.01 -0.84 7.45 -2.39 -0.02 -0.86 16 21 H -0.02 -1.16 8.08 -2.38 -0.02 -1.17 16 22 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 23 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.48 7.38 -2.39 -0.02 1.46 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.39 8.14 -2.38 -0.02 1.38 16 29 H 0.03 0.79 6.50 -2.39 -0.02 0.78 16 30 H 0.36 7.99 8.89 -89.70 -0.80 7.19 16 31 H 0.05 1.88 7.40 -2.39 -0.02 1.86 16 32 H 0.04 1.41 7.24 -2.39 -0.02 1.39 16 Total: -1.00 -67.44 255.31 0.38 -67.05 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.29 Total: 7.05 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 2.63 Total: -20.34 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -3.09 Total: -78.30 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -1.48 Total: -22.47 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.44 0.38 -67.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.181 kcal (2) G-P(sol) polarization free energy of solvation -67.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds