Wall clock time and date at job start Mon Mar 30 2020 02:06:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52998 * 110.06732 * 2 1
4 4 N 1.47905 * 109.91769 * 238.79334 * 2 1 3
5 5 C 1.48536 * 105.81908 * 215.31626 * 4 2 1
6 6 C 1.54930 * 103.22644 * 39.20584 * 5 4 2
7 7 C 1.53992 * 109.91947 * 121.20230 * 2 1 3
8 8 H 1.08995 * 110.39510 * 239.54015 * 7 2 1
9 9 O 1.42901 * 110.30691 * 1.66522 * 7 2 1
10 10 C 1.42905 * 114.00134 * 207.16847 * 9 7 2
11 11 C 1.50703 * 109.47264 * 179.97438 * 10 9 7
12 12 H 1.07998 * 119.99574 * 359.97438 * 11 10 9
13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9
14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10
16 16 H 1.48494 * 109.46915 * 90.00415 * 15 13 11
17 17 H 1.48507 * 109.47197 * 210.00055 * 15 13 11
18 18 H 1.48498 * 109.47171 * 330.00226 * 15 13 11
19 19 H 1.09006 * 109.47411 * 298.79695 * 1 2 3
20 20 H 1.08999 * 109.47530 * 58.79589 * 1 2 3
21 21 H 1.08999 * 109.47191 * 178.79829 * 1 2 3
22 22 H 1.08998 * 109.47503 * 181.20320 * 3 2 1
23 23 H 1.09001 * 109.47174 * 301.20610 * 3 2 1
24 24 H 1.09005 * 109.47253 * 61.20119 * 3 2 1
25 25 H 1.00894 * 110.99851 * 335.83362 * 4 2 1
26 26 H 1.09004 * 110.66330 * 280.77281 * 5 4 2
27 27 H 1.09001 * 110.66366 * 157.64557 * 5 4 2
28 28 H 1.09007 * 110.72751 * 204.22139 * 6 5 4
29 29 H 1.09007 * 110.72459 * 80.94733 * 6 5 4
30 30 H 1.09001 * 109.47103 * 300.00246 * 10 9 7
31 31 H 1.09004 * 109.47054 * 59.99750 * 10 9 7
32 32 H 0.96997 * 119.99752 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0549 1.4371 0.0000
4 7 2.0338 -0.7205 -1.1894
5 6 3.2681 -1.4185 -0.7471
6 6 2.9059 -1.9116 0.6762
7 6 2.0546 -0.7500 1.2384
8 1 2.6709 -0.0904 1.8491
9 8 0.9641 -1.2614 2.0074
10 6 1.2541 -1.4122 3.3985
11 6 0.0406 -1.9543 4.1088
12 1 -0.8620 -2.1625 3.5535
13 6 0.0827 -2.1846 5.4676
14 7 1.1817 -1.9306 6.1438
15 14 -1.4218 -2.8559 6.3481
16 1 -1.3750 -4.3401 6.3463
17 1 -1.4366 -2.3629 7.7489
18 1 -2.6496 -2.3985 5.6493
19 1 -0.3634 0.4951 0.9006
20 1 -0.3634 0.5324 -0.8790
21 1 -0.3633 -1.0274 -0.0216
22 1 3.1446 1.4259 -0.0216
23 1 1.6795 1.9611 -0.8790
24 1 1.7146 1.9483 0.9006
25 1 1.3490 -1.3781 -1.5307
26 1 4.1097 -0.7266 -0.7120
27 1 3.4888 -2.2616 -1.4019
28 1 3.8052 -2.0558 1.2751
29 1 2.3214 -2.8305 0.6290
30 1 2.0876 -2.1035 3.5231
31 1 1.5196 -0.4432 3.8215
32 1 1.2111 -2.0923 7.0998
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261086329.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:06:07
Heat of formation + Delta-G solvation = -57.397945 kcal
Electronic energy + Delta-G solvation = -13277.214834 eV
Core-core repulsion = 11044.231903 eV
Total energy + Delta-G solvation = -2232.982930 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.26970 -35.69343 -32.67467 -32.03334 -28.93619 -27.40034 -26.59466 -24.43857
-22.38887 -20.90058 -18.92354 -16.49728 -16.10093 -15.36122 -14.90651 -14.42813
-13.83882 -13.65853 -13.14682 -12.74523 -12.45552 -11.92477 -11.73448 -11.47087
-11.30796 -11.01865 -10.96122 -10.83876 -10.68560 -10.45030 -10.23939 -9.89774
-9.12350 -8.87381 -8.45000 -8.12883 -6.13461 -4.15451 3.28000 3.33174
3.38282 4.30705 4.38340 4.72087 5.05581 5.22860 5.31350 5.38847
5.46995 5.62603 5.78130 5.90022 5.94939 6.03447 6.09364 6.23702
6.29018 6.37175 6.47078 6.55862 6.75717 7.05870 7.10394 7.40878
7.55742 7.77036 8.13237 8.55984 8.98091 9.49609 10.97965
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.055593 B = 0.008304 C = 0.007976
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.543587 B = 3370.990453 C = 3509.538873
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.094 3.906
3 C -0.124 4.124
4 N -0.666 5.666
5 C 0.044 3.956
6 C -0.180 4.180
7 C 0.068 3.932
8 H 0.059 0.941
9 O -0.380 6.380
10 C 0.195 3.805
11 C -0.515 4.515
12 H 0.066 0.934
13 C 0.056 3.944
14 N -0.898 5.898
15 Si 0.907 3.093
16 H -0.279 1.279
17 H -0.285 1.285
18 H -0.271 1.271
19 H 0.069 0.931
20 H 0.047 0.953
21 H 0.060 0.940
22 H 0.051 0.949
23 H 0.058 0.942
24 H 0.057 0.943
25 H 0.337 0.663
26 H 0.076 0.924
27 H 0.071 0.929
28 H 0.069 0.931
29 H 0.076 0.924
30 H 0.003 0.997
31 H 0.004 0.996
32 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.394 2.726 -10.958 11.543
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.002 3.998
3 C -0.182 4.182
4 N -0.295 5.295
5 C -0.086 4.086
6 C -0.220 4.220
7 C 0.007 3.993
8 H 0.077 0.923
9 O -0.299 6.299
10 C 0.121 3.879
11 C -0.553 4.553
12 H 0.084 0.916
13 C -0.145 4.145
14 N -0.537 5.537
15 Si 0.734 3.266
16 H -0.205 1.205
17 H -0.210 1.210
18 H -0.196 1.196
19 H 0.088 0.912
20 H 0.066 0.934
21 H 0.079 0.921
22 H 0.070 0.930
23 H 0.077 0.923
24 H 0.076 0.924
25 H 0.153 0.847
26 H 0.094 0.906
27 H 0.089 0.911
28 H 0.088 0.912
29 H 0.094 0.906
30 H 0.021 0.979
31 H 0.022 0.978
32 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 2.597 3.257 -11.191 11.941
hybrid contribution -0.633 -1.138 1.427 1.932
sum 1.965 2.119 -9.764 10.183
Atomic orbital electron populations
1.21710 0.93224 1.02517 1.01440 1.21743 0.95753 0.94257 0.88001
1.21701 1.00602 0.94417 1.01500 1.62893 1.07238 1.29379 1.29955
1.22987 0.94067 0.97279 0.94253 1.23619 1.00678 1.00202 0.97464
1.23184 0.89359 0.93668 0.93081 0.92345 1.87920 1.35144 1.84568
1.22292 1.20224 0.96957 0.95294 0.75454 1.21045 0.98658 1.43040
0.92539 0.91614 1.24952 0.96757 0.95659 0.97132 1.69964 1.26920
1.48522 1.08311 0.86349 0.82530 0.79088 0.78609 1.20487 1.21042
1.19613 0.91199 0.93384 0.92108 0.92965 0.92273 0.92358 0.84690
0.90594 0.91077 0.91222 0.90563 0.97902 0.97813 0.92650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.13 7.52 37.15 0.28 -1.85 16
2 C 0.09 1.50 1.16 -130.53 -0.15 1.35 16
3 C -0.12 -1.78 8.62 37.16 0.32 -1.46 16
4 N -0.67 -9.53 7.03 -96.47 -0.68 -10.20 16
5 C 0.04 0.59 7.54 -1.90 -0.01 0.58 16
6 C -0.18 -3.00 6.80 -24.87 -0.17 -3.17 16
7 C 0.07 1.29 3.06 -25.38 -0.08 1.21 16
8 H 0.06 1.14 7.39 -51.93 -0.38 0.76 16
9 O -0.38 -8.99 8.15 -35.23 -0.29 -9.28 16
10 C 0.20 5.34 5.55 36.01 0.20 5.54 16
11 C -0.51 -15.11 9.43 -34.44 -0.32 -15.43 16
12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16
13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
14 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16
15 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16
16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16
17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
18 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16
19 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16
20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
21 H 0.06 1.04 7.80 -51.93 -0.41 0.64 16
22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
25 H 0.34 4.58 8.38 -39.30 -0.33 4.25 16
26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16
27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
29 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16
30 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16
31 H 0.00 0.12 8.10 -51.93 -0.42 -0.30 16
32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 263.38 15.07 3.97 3.97
Total: -1.00 -30.17 263.38 -6.61 -36.78
By element:
Atomic # 1 Polarization: 5.08 SS G_CDS: -5.30 Total: -0.21 kcal
Atomic # 6 Polarization: -11.67 SS G_CDS: -0.03 Total: -11.70 kcal
Atomic # 7 Polarization: -36.44 SS G_CDS: 0.06 Total: -36.38 kcal
Atomic # 8 Polarization: -8.99 SS G_CDS: -0.29 Total: -9.28 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 3.97 Total: 3.97 kcal
Total: -30.17 -6.61 -36.78 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261086329.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.614 kcal
(2) G-P(sol) polarization free energy of solvation -30.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.786 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds