Wall clock time and date at job start Mon Mar 30 2020 02:06:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52998 * 110.06732 * 2 1
4 4 N 1.47905 * 109.91769 * 238.79334 * 2 1 3
5 5 C 1.48536 * 105.81908 * 215.31626 * 4 2 1
6 6 C 1.54930 * 103.22644 * 39.20584 * 5 4 2
7 7 C 1.53992 * 109.91947 * 121.20230 * 2 1 3
8 8 H 1.08995 * 110.39510 * 239.54015 * 7 2 1
9 9 O 1.42901 * 110.30691 * 1.66522 * 7 2 1
10 10 C 1.42905 * 114.00134 * 207.16847 * 9 7 2
11 11 C 1.50703 * 109.47264 * 179.97438 * 10 9 7
12 12 H 1.07998 * 119.99574 * 359.97438 * 11 10 9
13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9
14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10
16 16 H 1.48494 * 109.46915 * 90.00415 * 15 13 11
17 17 H 1.48507 * 109.47197 * 210.00055 * 15 13 11
18 18 H 1.48498 * 109.47171 * 330.00226 * 15 13 11
19 19 H 1.09006 * 109.47411 * 298.79695 * 1 2 3
20 20 H 1.08999 * 109.47530 * 58.79589 * 1 2 3
21 21 H 1.08999 * 109.47191 * 178.79829 * 1 2 3
22 22 H 1.08998 * 109.47503 * 181.20320 * 3 2 1
23 23 H 1.09001 * 109.47174 * 301.20610 * 3 2 1
24 24 H 1.09005 * 109.47253 * 61.20119 * 3 2 1
25 25 H 1.00894 * 110.99851 * 335.83362 * 4 2 1
26 26 H 1.09004 * 110.66330 * 280.77281 * 5 4 2
27 27 H 1.09001 * 110.66366 * 157.64557 * 5 4 2
28 28 H 1.09007 * 110.72751 * 204.22139 * 6 5 4
29 29 H 1.09007 * 110.72459 * 80.94733 * 6 5 4
30 30 H 1.09001 * 109.47103 * 300.00246 * 10 9 7
31 31 H 1.09004 * 109.47054 * 59.99750 * 10 9 7
32 32 H 0.96997 * 119.99752 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0549 1.4371 0.0000
4 7 2.0338 -0.7205 -1.1894
5 6 3.2681 -1.4185 -0.7471
6 6 2.9059 -1.9116 0.6762
7 6 2.0546 -0.7500 1.2384
8 1 2.6709 -0.0904 1.8491
9 8 0.9641 -1.2614 2.0074
10 6 1.2541 -1.4122 3.3985
11 6 0.0406 -1.9543 4.1088
12 1 -0.8620 -2.1625 3.5535
13 6 0.0827 -2.1846 5.4676
14 7 1.1817 -1.9306 6.1438
15 14 -1.4218 -2.8559 6.3481
16 1 -1.3750 -4.3401 6.3463
17 1 -1.4366 -2.3629 7.7489
18 1 -2.6496 -2.3985 5.6493
19 1 -0.3634 0.4951 0.9006
20 1 -0.3634 0.5324 -0.8790
21 1 -0.3633 -1.0274 -0.0216
22 1 3.1446 1.4259 -0.0216
23 1 1.6795 1.9611 -0.8790
24 1 1.7146 1.9483 0.9006
25 1 1.3490 -1.3781 -1.5307
26 1 4.1097 -0.7266 -0.7120
27 1 3.4888 -2.2616 -1.4019
28 1 3.8052 -2.0558 1.2751
29 1 2.3214 -2.8305 0.6290
30 1 2.0876 -2.1035 3.5231
31 1 1.5196 -0.4432 3.8215
32 1 1.2111 -2.0923 7.0998
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261086329.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:06:07
Heat of formation + Delta-G solvation = -78.560961 kcal
Electronic energy + Delta-G solvation = -13278.132531 eV
Core-core repulsion = 11044.231903 eV
Total energy + Delta-G solvation = -2233.900628 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.68153 -37.47794 -34.86683 -33.28608 -30.47122 -29.22451 -28.04557 -25.83687
-24.49907 -22.23346 -20.33586 -18.63673 -17.68486 -16.91919 -16.44359 -16.31610
-15.50901 -15.10624 -14.78342 -14.22003 -13.96870 -13.41665 -13.24172 -13.00101
-12.84577 -12.81100 -12.66234 -12.28208 -12.17176 -11.95637 -11.94567 -11.44152
-11.26361 -10.87554 -10.22888 -9.62478 -8.35444 -6.48330 1.37265 1.40005
1.52129 2.31267 2.98164 3.05856 3.16072 3.73364 3.98710 4.00262
4.24141 4.31079 4.41280 4.57253 4.74436 4.78536 4.83699 4.84614
4.99561 5.03459 5.07799 5.11002 5.16935 5.34252 5.41151 5.52507
5.81405 5.93043 6.39249 6.52535 6.79600 7.23970 8.76809
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.055593 B = 0.008304 C = 0.007976
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.543587 B = 3370.990453 C = 3509.538873
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.097 3.903
3 C -0.121 4.121
4 N -0.656 5.656
5 C 0.054 3.946
6 C -0.179 4.179
7 C 0.050 3.950
8 H 0.047 0.953
9 O -0.389 6.389
10 C 0.213 3.787
11 C -0.547 4.547
12 H 0.062 0.938
13 C 0.006 3.994
14 N -0.930 5.930
15 Si 0.983 3.017
16 H -0.268 1.268
17 H -0.274 1.274
18 H -0.264 1.264
19 H 0.046 0.954
20 H 0.075 0.925
21 H 0.046 0.954
22 H 0.059 0.941
23 H 0.077 0.923
24 H 0.049 0.951
25 H 0.343 0.657
26 H 0.089 0.911
27 H 0.098 0.902
28 H 0.068 0.932
29 H 0.061 0.939
30 H -0.019 1.019
31 H -0.019 1.019
32 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.937 2.600 -11.983 12.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.006 3.994
3 C -0.179 4.179
4 N -0.285 5.285
5 C -0.075 4.075
6 C -0.219 4.219
7 C -0.010 4.010
8 H 0.065 0.935
9 O -0.308 6.308
10 C 0.138 3.862
11 C -0.585 4.585
12 H 0.080 0.920
13 C -0.193 4.193
14 N -0.570 5.570
15 Si 0.805 3.195
16 H -0.193 1.193
17 H -0.199 1.199
18 H -0.188 1.188
19 H 0.066 0.934
20 H 0.094 0.906
21 H 0.065 0.935
22 H 0.078 0.922
23 H 0.096 0.904
24 H 0.068 0.932
25 H 0.159 0.841
26 H 0.107 0.893
27 H 0.116 0.884
28 H 0.087 0.913
29 H 0.080 0.920
30 H -0.001 1.001
31 H -0.001 1.001
32 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 2.154 3.136 -12.244 12.822
hybrid contribution -0.425 -1.079 1.703 2.060
sum 1.729 2.057 -10.541 10.878
Atomic orbital electron populations
1.21656 0.93469 1.01712 1.01616 1.21742 0.95605 0.95104 0.86979
1.21677 1.01098 0.93095 1.01992 1.62930 1.07570 1.29607 1.28393
1.23043 0.93943 0.98330 0.92191 1.23587 0.99917 0.98639 0.99743
1.23634 0.88774 0.94928 0.93714 0.93483 1.87883 1.37298 1.85069
1.20538 1.19785 0.95722 0.93233 0.77482 1.21369 0.99117 1.44403
0.93597 0.92001 1.25978 1.00284 0.95315 0.97691 1.70075 1.29129
1.48785 1.08969 0.85188 0.78174 0.78700 0.77395 1.19301 1.19851
1.18785 0.93440 0.90583 0.93520 0.92207 0.90401 0.93180 0.84083
0.89309 0.88378 0.91311 0.91976 1.00145 1.00149 0.92035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.03 7.52 71.98 0.54 -3.48 16
2 C 0.10 3.01 1.16 3.67 0.00 3.01 16
3 C -0.12 -3.26 8.62 71.98 0.62 -2.64 16
4 N -0.66 -17.16 7.03 -459.13 -3.23 -20.39 16
5 C 0.05 1.33 7.54 86.65 0.65 1.99 16
6 C -0.18 -5.92 6.80 31.80 0.22 -5.71 16
7 C 0.05 1.91 3.06 31.47 0.10 2.01 16
8 H 0.05 1.90 7.39 -2.39 -0.02 1.88 16
9 O -0.39 -19.02 8.15 -148.98 -1.21 -20.24 16
10 C 0.21 12.17 5.55 71.24 0.40 12.56 16
11 C -0.55 -32.90 9.43 25.60 0.24 -32.66 16
12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16
13 C 0.01 0.34 5.46 84.65 0.46 0.80 16
14 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16
15 Si 0.98 44.63 29.54 68.60 2.03 46.65 16
16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
18 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16
19 H 0.05 1.70 7.91 -2.38 -0.02 1.68 16
20 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
21 H 0.05 1.59 7.80 -2.39 -0.02 1.57 16
22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
24 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16
25 H 0.34 8.47 8.38 -89.70 -0.75 7.72 16
26 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16
27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16
28 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16
29 H 0.06 2.22 8.08 -2.38 -0.02 2.20 16
30 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16
31 H -0.02 -1.16 8.10 -2.38 -0.02 -1.18 16
32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16
Total: -1.00 -65.11 263.38 1.43 -63.69
By element:
Atomic # 1 Polarization: 10.26 SS G_CDS: 0.33 Total: 10.59 kcal
Atomic # 6 Polarization: -27.34 SS G_CDS: 3.23 Total: -24.11 kcal
Atomic # 7 Polarization: -73.64 SS G_CDS: -2.94 Total: -76.58 kcal
Atomic # 8 Polarization: -19.02 SS G_CDS: -1.21 Total: -20.24 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -65.11 1.43 -63.69 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261086329.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.874 kcal
(2) G-P(sol) polarization free energy of solvation -65.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds