Wall clock time and date at job start Mon Mar 30 2020 02:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 110.06732 * 2 1 4 4 N 1.47905 * 109.91769 * 238.79334 * 2 1 3 5 5 C 1.48536 * 105.81908 * 215.31626 * 4 2 1 6 6 C 1.54930 * 103.22644 * 39.20584 * 5 4 2 7 7 C 1.53992 * 109.91947 * 121.20230 * 2 1 3 8 8 H 1.08995 * 110.39510 * 239.54015 * 7 2 1 9 9 O 1.42901 * 110.30691 * 1.66522 * 7 2 1 10 10 C 1.42905 * 114.00134 * 207.16847 * 9 7 2 11 11 C 1.50703 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99574 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46915 * 90.00415 * 15 13 11 17 17 H 1.48507 * 109.47197 * 210.00055 * 15 13 11 18 18 H 1.48498 * 109.47171 * 330.00226 * 15 13 11 19 19 H 1.09006 * 109.47411 * 298.79695 * 1 2 3 20 20 H 1.08999 * 109.47530 * 58.79589 * 1 2 3 21 21 H 1.08999 * 109.47191 * 178.79829 * 1 2 3 22 22 H 1.08998 * 109.47503 * 181.20320 * 3 2 1 23 23 H 1.09001 * 109.47174 * 301.20610 * 3 2 1 24 24 H 1.09005 * 109.47253 * 61.20119 * 3 2 1 25 25 H 1.00894 * 110.99851 * 335.83362 * 4 2 1 26 26 H 1.09004 * 110.66330 * 280.77281 * 5 4 2 27 27 H 1.09001 * 110.66366 * 157.64557 * 5 4 2 28 28 H 1.09007 * 110.72751 * 204.22139 * 6 5 4 29 29 H 1.09007 * 110.72459 * 80.94733 * 6 5 4 30 30 H 1.09001 * 109.47103 * 300.00246 * 10 9 7 31 31 H 1.09004 * 109.47054 * 59.99750 * 10 9 7 32 32 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0549 1.4371 0.0000 4 7 2.0338 -0.7205 -1.1894 5 6 3.2681 -1.4185 -0.7471 6 6 2.9059 -1.9116 0.6762 7 6 2.0546 -0.7500 1.2384 8 1 2.6709 -0.0904 1.8491 9 8 0.9641 -1.2614 2.0074 10 6 1.2541 -1.4122 3.3985 11 6 0.0406 -1.9543 4.1088 12 1 -0.8620 -2.1625 3.5535 13 6 0.0827 -2.1846 5.4676 14 7 1.1817 -1.9306 6.1438 15 14 -1.4218 -2.8559 6.3481 16 1 -1.3750 -4.3401 6.3463 17 1 -1.4366 -2.3629 7.7489 18 1 -2.6496 -2.3985 5.6493 19 1 -0.3634 0.4951 0.9006 20 1 -0.3634 0.5324 -0.8790 21 1 -0.3633 -1.0274 -0.0216 22 1 3.1446 1.4259 -0.0216 23 1 1.6795 1.9611 -0.8790 24 1 1.7146 1.9483 0.9006 25 1 1.3490 -1.3781 -1.5307 26 1 4.1097 -0.7266 -0.7120 27 1 3.4888 -2.2616 -1.4019 28 1 3.8052 -2.0558 1.2751 29 1 2.3214 -2.8305 0.6290 30 1 2.0876 -2.1035 3.5231 31 1 1.5196 -0.4432 3.8215 32 1 1.2111 -2.0923 7.0998 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:07 Heat of formation + Delta-G solvation = -78.560961 kcal Electronic energy + Delta-G solvation = -13278.132531 eV Core-core repulsion = 11044.231903 eV Total energy + Delta-G solvation = -2233.900628 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68153 -37.47794 -34.86683 -33.28608 -30.47122 -29.22451 -28.04557 -25.83687 -24.49907 -22.23346 -20.33586 -18.63673 -17.68486 -16.91919 -16.44359 -16.31610 -15.50901 -15.10624 -14.78342 -14.22003 -13.96870 -13.41665 -13.24172 -13.00101 -12.84577 -12.81100 -12.66234 -12.28208 -12.17176 -11.95637 -11.94567 -11.44152 -11.26361 -10.87554 -10.22888 -9.62478 -8.35444 -6.48330 1.37265 1.40005 1.52129 2.31267 2.98164 3.05856 3.16072 3.73364 3.98710 4.00262 4.24141 4.31079 4.41280 4.57253 4.74436 4.78536 4.83699 4.84614 4.99561 5.03459 5.07799 5.11002 5.16935 5.34252 5.41151 5.52507 5.81405 5.93043 6.39249 6.52535 6.79600 7.23970 8.76809 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055593 B = 0.008304 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.543587 B = 3370.990453 C = 3509.538873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.097 3.903 3 C -0.121 4.121 4 N -0.656 5.656 5 C 0.054 3.946 6 C -0.179 4.179 7 C 0.050 3.950 8 H 0.047 0.953 9 O -0.389 6.389 10 C 0.213 3.787 11 C -0.547 4.547 12 H 0.062 0.938 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.983 3.017 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.264 1.264 19 H 0.046 0.954 20 H 0.075 0.925 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.343 0.657 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.061 0.939 30 H -0.019 1.019 31 H -0.019 1.019 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 2.600 -11.983 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.006 3.994 3 C -0.179 4.179 4 N -0.285 5.285 5 C -0.075 4.075 6 C -0.219 4.219 7 C -0.010 4.010 8 H 0.065 0.935 9 O -0.308 6.308 10 C 0.138 3.862 11 C -0.585 4.585 12 H 0.080 0.920 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.805 3.195 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.188 1.188 19 H 0.066 0.934 20 H 0.094 0.906 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.159 0.841 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.080 0.920 30 H -0.001 1.001 31 H -0.001 1.001 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.154 3.136 -12.244 12.822 hybrid contribution -0.425 -1.079 1.703 2.060 sum 1.729 2.057 -10.541 10.878 Atomic orbital electron populations 1.21656 0.93469 1.01712 1.01616 1.21742 0.95605 0.95104 0.86979 1.21677 1.01098 0.93095 1.01992 1.62930 1.07570 1.29607 1.28393 1.23043 0.93943 0.98330 0.92191 1.23587 0.99917 0.98639 0.99743 1.23634 0.88774 0.94928 0.93714 0.93483 1.87883 1.37298 1.85069 1.20538 1.19785 0.95722 0.93233 0.77482 1.21369 0.99117 1.44403 0.93597 0.92001 1.25978 1.00284 0.95315 0.97691 1.70075 1.29129 1.48785 1.08969 0.85188 0.78174 0.78700 0.77395 1.19301 1.19851 1.18785 0.93440 0.90583 0.93520 0.92207 0.90401 0.93180 0.84083 0.89309 0.88378 0.91311 0.91976 1.00145 1.00149 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 7.52 71.98 0.54 -3.48 16 2 C 0.10 3.01 1.16 3.67 0.00 3.01 16 3 C -0.12 -3.26 8.62 71.98 0.62 -2.64 16 4 N -0.66 -17.16 7.03 -459.13 -3.23 -20.39 16 5 C 0.05 1.33 7.54 86.65 0.65 1.99 16 6 C -0.18 -5.92 6.80 31.80 0.22 -5.71 16 7 C 0.05 1.91 3.06 31.47 0.10 2.01 16 8 H 0.05 1.90 7.39 -2.39 -0.02 1.88 16 9 O -0.39 -19.02 8.15 -148.98 -1.21 -20.24 16 10 C 0.21 12.17 5.55 71.24 0.40 12.56 16 11 C -0.55 -32.90 9.43 25.60 0.24 -32.66 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 13 C 0.01 0.34 5.46 84.65 0.46 0.80 16 14 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 15 Si 0.98 44.63 29.54 68.60 2.03 46.65 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 19 H 0.05 1.70 7.91 -2.38 -0.02 1.68 16 20 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.05 1.59 7.80 -2.39 -0.02 1.57 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 25 H 0.34 8.47 8.38 -89.70 -0.75 7.72 16 26 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.06 2.22 8.08 -2.38 -0.02 2.20 16 30 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 31 H -0.02 -1.16 8.10 -2.38 -0.02 -1.18 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -65.11 263.38 1.43 -63.69 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.33 Total: 10.59 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.23 Total: -24.11 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -2.94 Total: -76.58 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.21 Total: -20.24 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.11 1.43 -63.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.874 kcal (2) G-P(sol) polarization free energy of solvation -65.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds