Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 C 1.52997 * 109.46993 * 119.99904 * 2 1 3 5 5 H 1.08996 * 109.47567 * 305.61777 * 4 2 1 6 6 C 1.50701 * 109.47089 * 185.61257 * 4 2 1 7 7 H 1.08001 * 120.00483 * 295.07285 * 6 4 2 8 8 C 1.37880 * 119.99782 * 115.06620 * 6 4 2 9 9 N 1.31517 * 119.99891 * 5.05054 * 8 6 4 10 10 Si 1.86800 * 119.99973 * 185.04368 * 8 6 4 11 11 H 1.48503 * 109.47272 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46865 * 120.00429 * 10 8 6 13 13 H 1.48497 * 109.47239 * 240.00289 * 10 8 6 14 14 N 1.46904 * 109.46958 * 65.61555 * 4 2 1 15 15 C 1.47472 * 111.00091 * 275.97059 * 14 4 2 16 16 C 1.53513 * 87.93199 * 221.29850 * 15 14 4 17 17 O 1.42901 * 114.17364 * 139.67058 * 16 15 14 18 18 C 1.47481 * 110.99860 * 179.97438 * 14 4 2 19 19 H 1.09003 * 109.47205 * 299.99712 * 1 2 3 20 20 H 1.09004 * 109.47022 * 59.99837 * 1 2 3 21 21 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47205 * 240.00288 * 2 1 3 23 23 H 1.09001 * 109.47273 * 175.19440 * 3 2 1 24 24 H 1.08999 * 109.47381 * 295.19704 * 3 2 1 25 25 H 1.09007 * 109.47409 * 55.20031 * 3 2 1 26 26 H 0.96995 * 119.99821 * 179.97438 * 9 8 6 27 27 H 1.09001 * 113.47543 * 336.05766 * 15 14 4 28 28 H 1.08994 * 113.47825 * 106.52847 * 15 14 4 29 29 H 1.09001 * 114.17223 * 272.37488 * 16 15 14 30 30 H 0.96700 * 113.99674 * 86.15588 * 17 16 15 31 31 H 1.08994 * 113.48085 * 253.47124 * 18 14 4 32 32 H 1.09002 * 113.47647 * 23.88689 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5969 -0.2688 2.1364 6 6 3.5405 -0.6020 1.3207 7 1 4.1559 -1.0664 0.5643 8 6 4.1280 0.1000 2.3518 9 7 3.3868 0.5809 3.3260 10 14 5.9766 0.3680 2.3651 11 1 6.5776 -0.2676 1.1650 12 1 6.2657 1.8246 2.3504 13 1 6.5561 -0.2393 3.5900 14 7 1.6640 -2.1398 1.1834 15 6 0.2894 -2.3457 1.6760 16 6 0.7942 -3.6064 2.3919 17 8 0.2481 -3.7956 3.6988 18 6 2.1406 -2.8687 2.3736 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1266 1.4437 0.0861 24 1 1.7486 1.9309 -0.9299 25 1 1.6081 1.9806 0.8439 26 1 3.8001 1.0744 4.0515 27 1 -0.0490 -1.5655 2.3578 28 1 -0.4292 -2.5546 0.8836 29 1 0.7709 -4.5074 1.7788 30 1 -0.5997 -4.2606 3.7072 31 1 2.9905 -3.5206 2.1722 32 1 2.2974 -2.2278 3.2413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261121727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -21.040779 kcal Electronic energy + Delta-G solvation = -13632.172361 eV Core-core repulsion = 11400.765996 eV Total energy + Delta-G solvation = -2231.406365 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.39655 -35.85165 -34.04520 -32.26679 -28.21128 -26.65990 -24.77602 -24.58268 -22.12875 -19.04743 -18.82864 -17.24389 -16.32316 -15.32441 -14.51881 -14.43591 -13.36165 -13.11027 -12.79487 -12.18211 -12.02972 -11.73859 -11.53704 -11.28865 -11.24026 -10.93243 -10.80944 -10.33784 -10.01243 -9.96091 -9.69505 -9.25156 -9.04315 -8.83139 -8.50817 -7.65347 -6.06146 -4.08683 3.27202 3.36302 3.40932 4.39464 4.62135 5.10504 5.18727 5.41554 5.59570 5.93258 6.04951 6.11442 6.28260 6.37858 6.39323 6.52978 6.70321 6.76611 6.83811 6.88055 6.89239 6.98390 7.22515 7.47686 7.63277 7.69711 7.86185 8.06631 8.26970 8.51397 9.06074 9.55534 11.01494 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.014798 C = 0.010950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.146250 B = 1891.634197 C = 2556.512934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 C -0.124 4.124 4 C 0.168 3.832 5 H 0.054 0.946 6 C -0.500 4.500 7 H 0.057 0.943 8 C 0.068 3.932 9 N -0.891 5.891 10 Si 0.888 3.112 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.284 1.284 14 N -0.470 5.470 15 C -0.030 4.030 16 C 0.052 3.948 17 O -0.560 6.560 18 C 0.042 3.958 19 H 0.042 0.958 20 H 0.034 0.966 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.042 0.958 26 H 0.261 0.739 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.367 0.633 31 H 0.071 0.929 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -4.150 -2.468 7.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.096 4.096 3 C -0.182 4.182 4 C 0.062 3.938 5 H 0.072 0.928 6 C -0.539 4.539 7 H 0.075 0.925 8 C -0.134 4.134 9 N -0.529 5.529 10 Si 0.716 3.284 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.195 5.195 15 C -0.160 4.160 16 C -0.008 4.008 17 O -0.364 6.364 18 C -0.087 4.087 19 H 0.061 0.939 20 H 0.053 0.947 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.213 0.787 31 H 0.090 0.910 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.648 -3.893 -2.807 6.682 hybrid contribution 0.289 0.370 0.669 0.817 sum -4.360 -3.524 -2.139 6.000 Atomic orbital electron populations 1.22102 0.98206 1.00870 0.99724 1.21034 0.92394 0.96130 1.00025 1.21604 1.02720 0.95677 0.98171 1.20148 0.96158 0.83454 0.94048 0.92829 1.20964 0.90805 1.32689 1.09462 0.92452 1.24977 0.97955 0.95412 0.95086 1.69908 1.35216 1.37029 1.10773 0.86590 0.85800 0.77929 0.78063 1.19602 1.20950 1.21038 1.68984 1.01602 1.15977 1.32946 1.24529 0.96024 0.97609 0.97818 1.23835 0.97483 0.96223 0.83210 1.86597 1.40060 1.80720 1.29002 1.23440 0.93837 0.96189 0.95218 0.93862 0.94689 0.92718 0.92779 0.91391 0.95768 0.93913 0.92859 0.91544 0.91378 0.90075 0.78712 0.91041 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.44 37.16 0.31 -2.57 16 2 C -0.08 -1.68 2.71 -90.62 -0.25 -1.93 16 3 C -0.12 -2.69 8.97 37.16 0.33 -2.36 16 4 C 0.17 4.14 1.30 -68.86 -0.09 4.05 16 5 H 0.05 1.49 6.30 -51.93 -0.33 1.17 16 6 C -0.50 -13.40 6.08 -34.44 -0.21 -13.61 16 7 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 8 C 0.07 1.85 5.40 -17.82 -0.10 1.76 16 9 N -0.89 -25.18 12.62 55.43 0.70 -24.48 16 10 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.47 -10.48 6.10 -237.88 -1.45 -11.94 16 15 C -0.03 -0.58 5.40 -7.50 -0.04 -0.62 16 16 C 0.05 0.92 5.56 -26.18 -0.15 0.78 16 17 O -0.56 -9.55 13.71 -35.23 -0.48 -10.03 16 18 C 0.04 0.93 6.71 -7.48 -0.05 0.88 16 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.99 5.10 -51.93 -0.27 0.72 16 22 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.07 1.60 6.83 -51.93 -0.35 1.24 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.07 1.38 7.54 -51.93 -0.39 0.99 16 28 H 0.07 1.16 6.82 -51.93 -0.35 0.80 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.37 4.17 9.12 45.56 0.42 4.59 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 2.10 7.89 -51.93 -0.41 1.69 16 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -28.96 256.58 -6.81 -35.77 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.19 Total: 4.28 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.23 Total: -13.62 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.75 Total: -36.42 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.48 Total: -10.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.96 -6.81 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.732 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds