Wall clock time and date at job start Mon Mar 30 2020 02:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 C 1.52997 * 109.46993 * 119.99904 * 2 1 3 5 5 H 1.08996 * 109.47567 * 305.61777 * 4 2 1 6 6 C 1.50701 * 109.47089 * 185.61257 * 4 2 1 7 7 H 1.08001 * 120.00483 * 295.07285 * 6 4 2 8 8 C 1.37880 * 119.99782 * 115.06620 * 6 4 2 9 9 N 1.31517 * 119.99891 * 5.05054 * 8 6 4 10 10 Si 1.86800 * 119.99973 * 185.04368 * 8 6 4 11 11 H 1.48503 * 109.47272 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.46865 * 120.00429 * 10 8 6 13 13 H 1.48497 * 109.47239 * 240.00289 * 10 8 6 14 14 N 1.46904 * 109.46958 * 65.61555 * 4 2 1 15 15 C 1.47472 * 111.00091 * 275.97059 * 14 4 2 16 16 C 1.53513 * 87.93199 * 221.29850 * 15 14 4 17 17 O 1.42901 * 114.17364 * 139.67058 * 16 15 14 18 18 C 1.47481 * 110.99860 * 179.97438 * 14 4 2 19 19 H 1.09003 * 109.47205 * 299.99712 * 1 2 3 20 20 H 1.09004 * 109.47022 * 59.99837 * 1 2 3 21 21 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47205 * 240.00288 * 2 1 3 23 23 H 1.09001 * 109.47273 * 175.19440 * 3 2 1 24 24 H 1.08999 * 109.47381 * 295.19704 * 3 2 1 25 25 H 1.09007 * 109.47409 * 55.20031 * 3 2 1 26 26 H 0.96995 * 119.99821 * 179.97438 * 9 8 6 27 27 H 1.09001 * 113.47543 * 336.05766 * 15 14 4 28 28 H 1.08994 * 113.47825 * 106.52847 * 15 14 4 29 29 H 1.09001 * 114.17223 * 272.37488 * 16 15 14 30 30 H 0.96700 * 113.99674 * 86.15588 * 17 16 15 31 31 H 1.08994 * 113.48085 * 253.47124 * 18 14 4 32 32 H 1.09002 * 113.47647 * 23.88689 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5969 -0.2688 2.1364 6 6 3.5405 -0.6020 1.3207 7 1 4.1559 -1.0664 0.5643 8 6 4.1280 0.1000 2.3518 9 7 3.3868 0.5809 3.3260 10 14 5.9766 0.3680 2.3651 11 1 6.5776 -0.2676 1.1650 12 1 6.2657 1.8246 2.3504 13 1 6.5561 -0.2393 3.5900 14 7 1.6640 -2.1398 1.1834 15 6 0.2894 -2.3457 1.6760 16 6 0.7942 -3.6064 2.3919 17 8 0.2481 -3.7956 3.6988 18 6 2.1406 -2.8687 2.3736 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1266 1.4437 0.0861 24 1 1.7486 1.9309 -0.9299 25 1 1.6081 1.9806 0.8439 26 1 3.8001 1.0744 4.0515 27 1 -0.0490 -1.5655 2.3578 28 1 -0.4292 -2.5546 0.8836 29 1 0.7709 -4.5074 1.7788 30 1 -0.5997 -4.2606 3.7072 31 1 2.9905 -3.5206 2.1722 32 1 2.2974 -2.2278 3.2413 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261121727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:27 Heat of formation + Delta-G solvation = -44.300064 kcal Electronic energy + Delta-G solvation = -13633.180959 eV Core-core repulsion = 11400.765996 eV Total energy + Delta-G solvation = -2232.414964 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.05098 -37.44563 -35.65355 -34.28116 -30.02429 -28.35739 -26.57864 -26.31529 -23.90265 -20.76932 -20.50504 -18.88816 -18.19444 -17.01907 -16.37531 -16.10337 -15.16419 -14.76945 -14.47405 -13.81727 -13.71524 -13.47007 -13.38297 -12.97709 -12.92364 -12.77805 -12.57125 -12.13642 -11.88698 -11.62123 -11.38181 -11.03404 -10.75343 -10.71465 -10.43010 -9.49527 -8.14479 -6.22253 1.35584 1.39149 1.49842 2.39828 3.07091 3.26148 3.65684 3.71728 4.17874 4.30592 4.42013 4.48810 4.71908 4.77058 4.83138 4.91334 4.99537 5.08337 5.11685 5.15047 5.22194 5.29605 5.40265 5.65371 5.70260 5.78246 5.90761 6.30458 6.59841 6.96128 7.00691 7.44767 8.92811 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.014798 C = 0.010950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.146250 B = 1891.634197 C = 2556.512934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C -0.117 4.117 4 C 0.173 3.827 5 H 0.015 0.985 6 C -0.505 4.505 7 H 0.045 0.955 8 C 0.026 3.974 9 N -0.922 5.922 10 Si 0.943 3.057 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.283 1.283 14 N -0.475 5.475 15 C -0.026 4.026 16 C 0.081 3.919 17 O -0.577 6.577 18 C 0.028 3.972 19 H 0.033 0.967 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.396 0.604 31 H 0.071 0.929 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 -5.140 -3.675 8.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.175 4.175 4 C 0.066 3.934 5 H 0.033 0.967 6 C -0.544 4.544 7 H 0.063 0.937 8 C -0.174 4.174 9 N -0.561 5.561 10 Si 0.769 3.231 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.210 1.210 14 N -0.199 5.199 15 C -0.155 4.155 16 C 0.022 3.978 17 O -0.385 6.385 18 C -0.101 4.101 19 H 0.052 0.948 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.246 0.754 31 H 0.089 0.911 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.562 -4.901 -4.023 8.435 hybrid contribution 0.524 0.630 1.054 1.335 sum -5.038 -4.272 -2.969 7.242 Atomic orbital electron populations 1.21982 0.95507 1.01862 1.00539 1.21011 0.94764 0.95674 0.98330 1.21520 1.00914 0.95898 0.99164 1.19975 0.94784 0.84876 0.93742 0.96730 1.21124 0.92191 1.32240 1.08887 0.93712 1.25596 1.01604 0.95384 0.94819 1.70034 1.36683 1.38036 1.11390 0.85726 0.81411 0.77917 0.77997 1.19105 1.20462 1.20951 1.68889 1.03821 1.14204 1.32997 1.24502 0.94830 0.97740 0.98473 1.23613 0.93755 0.96707 0.83744 1.86535 1.42090 1.81384 1.28447 1.23393 0.96782 0.96388 0.93569 0.94804 0.92043 0.91666 0.92899 0.93865 0.92453 0.95521 0.93049 0.93767 0.88205 0.86318 0.75423 0.91056 0.94524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.44 71.98 0.61 -4.47 16 2 C -0.08 -3.39 2.71 -10.80 -0.03 -3.42 16 3 C -0.12 -5.04 8.97 71.98 0.65 -4.40 16 4 C 0.17 8.65 1.30 44.17 0.06 8.71 16 5 H 0.01 0.85 6.30 -2.39 -0.02 0.83 16 6 C -0.51 -27.68 6.08 25.60 0.16 -27.52 16 7 H 0.04 2.51 7.82 -2.91 -0.02 2.49 16 8 C 0.03 1.41 5.40 84.65 0.46 1.87 16 9 N -0.92 -53.92 12.62 21.45 0.27 -53.65 16 10 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 N -0.48 -20.91 6.10 -906.89 -5.54 -26.45 16 15 C -0.03 -0.95 5.40 83.61 0.45 -0.50 16 16 C 0.08 2.70 5.56 30.95 0.17 2.87 16 17 O -0.58 -18.34 13.71 -148.98 -2.04 -20.39 16 18 C 0.03 1.24 6.71 83.62 0.56 1.80 16 19 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 20 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.06 2.17 5.10 -2.39 -0.01 2.16 16 22 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.04 2.04 6.83 -2.39 -0.02 2.02 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.04 1.83 7.54 -2.39 -0.02 1.81 16 28 H 0.10 3.02 6.82 -2.39 -0.02 3.00 16 29 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.40 7.61 9.12 -74.06 -0.68 6.94 16 31 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.04 1.95 7.89 -2.39 -0.02 1.93 16 Total: -1.00 -63.80 256.58 -1.78 -65.59 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.42 Total: 13.74 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 3.08 Total: -25.05 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -5.27 Total: -80.10 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -2.04 Total: -20.39 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -63.80 -1.78 -65.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.288 kcal (2) G-P(sol) polarization free energy of solvation -63.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds