Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46612 * 30.00338 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00041 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 C 1.54270 * 110.03287 * 297.16955 * 14 11 10 16 16 C 1.54888 * 104.19413 * 217.10613 * 15 14 11 17 17 C 1.54882 * 102.74909 * 37.94288 * 16 15 14 18 18 C 1.53871 * 110.03193 * 180.02562 * 14 11 10 19 19 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 21 21 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 22 22 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 23 23 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 24 24 H 1.08999 * 110.01592 * 58.61021 * 14 11 10 25 25 H 1.09008 * 110.48473 * 335.78187 * 15 14 11 26 26 H 1.08999 * 110.48612 * 98.42028 * 15 14 11 27 27 H 1.09001 * 110.75443 * 279.62529 * 16 15 14 28 28 H 1.08999 * 110.75339 * 156.25999 * 16 15 14 29 29 H 1.09000 * 110.48460 * 203.38077 * 17 16 15 30 30 H 1.09000 * 110.60273 * 80.79371 * 17 16 15 31 31 H 1.08999 * 110.03336 * 238.56922 * 18 14 11 32 32 H 1.09000 * 110.03270 * 359.94788 * 18 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 1 5.8652 -1.5461 -0.8446 13 8 5.9814 -1.5443 1.2182 14 6 6.3801 -3.5114 -0.1281 15 6 6.0921 -4.4072 1.0944 16 6 7.4441 -5.1070 1.3794 17 6 8.4756 -3.9883 1.0904 18 6 7.8956 -3.2451 -0.1300 19 1 -0.4850 0.8401 0.0004 20 1 3.8646 -0.3623 -0.0014 21 1 3.8482 -3.0428 -0.8909 22 1 3.8489 -3.0424 0.8892 23 1 5.7881 -2.0626 2.0114 24 1 6.0896 -4.0247 -1.0447 25 1 5.7886 -3.8013 1.9483 26 1 5.3243 -5.1431 0.8557 27 1 7.5914 -5.9515 0.7062 28 1 7.5020 -5.4264 2.4199 29 1 9.4474 -4.4187 0.8487 30 1 8.5594 -3.3143 1.9429 31 1 8.3411 -3.6298 -1.0474 32 1 8.0869 -2.1756 -0.0423 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261147289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -57.725150 kcal Electronic energy + Delta-G solvation = -13102.290281 eV Core-core repulsion = 10869.293162 eV Total energy + Delta-G solvation = -2232.997119 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.20300 -35.89532 -34.11291 -31.44793 -29.91308 -28.74295 -26.46945 -23.06089 -21.60222 -20.40187 -19.50511 -17.65624 -16.47616 -15.82552 -15.09169 -14.66418 -14.22890 -13.63455 -13.44537 -13.11061 -12.47030 -12.10620 -11.68110 -11.52170 -11.13429 -11.09111 -11.00206 -10.81551 -10.65064 -10.51327 -10.31941 -10.03998 -9.59952 -9.33378 -8.87024 -7.18723 -5.73592 -3.08403 3.43173 3.49852 3.50697 4.54267 4.60306 4.64427 4.68811 4.82052 5.23209 5.38002 5.45010 5.56182 5.58254 5.60859 5.65335 5.80529 5.85456 5.91067 5.92788 6.04559 6.12443 6.23826 6.31470 6.44518 6.54303 6.74069 7.97483 8.05592 8.45668 9.26139 9.98693 10.19447 11.44782 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066360 B = 0.008003 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.839811 B = 3497.953397 C = 3726.653949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.088 0.912 9 N -0.752 5.752 10 C 0.128 3.872 11 C 0.100 3.900 12 H 0.096 0.904 13 O -0.556 6.556 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.117 4.117 19 H 0.259 0.741 20 H 0.365 0.635 21 H 0.031 0.969 22 H 0.028 0.972 23 H 0.368 0.632 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.368 -8.519 1.572 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.375 4.375 8 H 0.106 0.894 9 N -0.397 5.397 10 C 0.000 4.000 11 C 0.041 3.959 12 H 0.114 0.886 13 O -0.362 6.362 14 C -0.141 4.141 15 C -0.159 4.159 16 C -0.162 4.162 17 C -0.160 4.160 18 C -0.154 4.154 19 H 0.069 0.931 20 H 0.198 0.802 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.217 0.783 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.318 -8.131 1.159 18.269 hybrid contribution 0.230 0.711 0.280 0.798 sum 16.548 -7.421 1.439 18.193 Atomic orbital electron populations 1.69710 1.05135 1.25832 1.57681 1.24666 0.95243 0.97285 1.01969 0.86541 0.79543 0.84752 0.77835 1.21136 1.21756 1.19816 1.19072 0.80729 0.94691 1.43017 0.89381 1.42641 1.03897 1.02272 1.90939 1.21315 0.89741 0.89815 0.99081 1.22223 0.93567 0.92595 0.87509 0.88636 1.86552 1.86120 1.47944 1.15609 1.22434 0.95638 0.96710 0.99317 1.22415 0.97269 0.98391 0.97797 1.22494 0.95082 0.97731 1.00893 1.22327 0.97941 0.97322 0.98435 1.22111 0.94450 1.01144 0.97732 0.93097 0.80194 0.95072 0.95402 0.78329 0.90240 0.91502 0.91344 0.91761 0.91850 0.92284 0.91595 0.92383 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.09 13.97 55.49 0.78 -29.31 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 22.99 27.73 -169.99 -4.71 18.27 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.84 6.52 56.52 0.37 -6.47 16 7 C -0.25 -7.20 10.47 -15.06 -0.16 -7.35 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -18.72 5.35 -59.91 -0.32 -19.04 16 10 C 0.13 2.52 5.61 -4.04 -0.02 2.49 16 11 C 0.10 1.60 2.61 -26.73 -0.07 1.53 16 12 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 13 O -0.56 -9.18 12.68 -35.23 -0.45 -9.63 16 14 C -0.12 -1.52 2.83 -89.50 -0.25 -1.77 16 15 C -0.12 -1.38 5.31 -25.07 -0.13 -1.51 16 16 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16 17 C -0.12 -1.23 6.83 -25.10 -0.17 -1.40 16 18 C -0.12 -1.32 6.22 -25.64 -0.16 -1.48 16 19 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 20 H 0.36 9.09 5.53 -40.82 -0.23 8.86 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.03 0.55 7.44 -51.93 -0.39 0.16 16 23 H 0.37 5.16 6.91 45.56 0.32 5.48 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 0.77 5.81 -51.92 -0.30 0.47 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.89 7.42 -51.93 -0.39 0.50 16 LS Contribution 255.52 15.07 3.85 3.85 Total: -1.00 -32.37 255.52 -6.47 -38.84 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.38 Total: 7.87 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.23 Total: -10.85 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.45 Total: -48.35 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.45 Total: -9.63 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.37 -6.47 -38.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.881 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds