Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46612 * 30.00338 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00041 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 C 1.54270 * 110.03287 * 297.16955 * 14 11 10 16 16 C 1.54888 * 104.19413 * 217.10613 * 15 14 11 17 17 C 1.54882 * 102.74909 * 37.94288 * 16 15 14 18 18 C 1.53871 * 110.03193 * 180.02562 * 14 11 10 19 19 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 20 20 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 21 21 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 22 22 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 23 23 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 24 24 H 1.08999 * 110.01592 * 58.61021 * 14 11 10 25 25 H 1.09008 * 110.48473 * 335.78187 * 15 14 11 26 26 H 1.08999 * 110.48612 * 98.42028 * 15 14 11 27 27 H 1.09001 * 110.75443 * 279.62529 * 16 15 14 28 28 H 1.08999 * 110.75339 * 156.25999 * 16 15 14 29 29 H 1.09000 * 110.48460 * 203.38077 * 17 16 15 30 30 H 1.09000 * 110.60273 * 80.79371 * 17 16 15 31 31 H 1.08999 * 110.03336 * 238.56922 * 18 14 11 32 32 H 1.09000 * 110.03270 * 359.94788 * 18 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 1 5.8652 -1.5461 -0.8446 13 8 5.9814 -1.5443 1.2182 14 6 6.3801 -3.5114 -0.1281 15 6 6.0921 -4.4072 1.0944 16 6 7.4441 -5.1070 1.3794 17 6 8.4756 -3.9883 1.0904 18 6 7.8956 -3.2451 -0.1300 19 1 -0.4850 0.8401 0.0004 20 1 3.8646 -0.3623 -0.0014 21 1 3.8482 -3.0428 -0.8909 22 1 3.8489 -3.0424 0.8892 23 1 5.7881 -2.0626 2.0114 24 1 6.0896 -4.0247 -1.0447 25 1 5.7886 -3.8013 1.9483 26 1 5.3243 -5.1431 0.8557 27 1 7.5914 -5.9515 0.7062 28 1 7.5020 -5.4264 2.4199 29 1 9.4474 -4.4187 0.8487 30 1 8.5594 -3.3143 1.9429 31 1 8.3411 -3.6298 -1.0474 32 1 8.0869 -2.1756 -0.0423 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -81.217269 kcal Electronic energy + Delta-G solvation = -13103.308976 eV Core-core repulsion = 10869.293162 eV Total energy + Delta-G solvation = -2234.015814 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.31262 -37.17648 -35.92891 -33.49976 -31.27108 -29.61621 -27.98707 -24.78611 -23.18538 -21.34824 -20.58204 -19.75663 -17.64244 -16.93616 -16.60197 -16.35926 -15.60554 -15.27436 -14.81738 -14.40636 -14.05674 -13.66099 -13.42898 -12.85807 -12.79945 -12.33076 -12.14144 -11.90617 -11.87284 -11.83708 -11.51571 -11.41481 -11.33086 -11.04096 -10.67009 -9.32859 -8.06205 -5.39151 1.37071 1.39092 1.48088 2.46165 3.23918 3.35602 3.60680 3.69814 3.84604 3.98310 4.19881 4.34515 4.51648 4.61217 4.69858 4.76343 4.83629 4.91058 4.93617 5.05212 5.13938 5.21492 5.29715 5.40769 5.53203 5.53406 5.71130 6.18036 6.81796 7.05202 7.82003 8.00916 9.15261 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066360 B = 0.008003 C = 0.007512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.839811 B = 3497.953397 C = 3726.653949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.239 4.239 8 H 0.057 0.943 9 N -0.756 5.756 10 C 0.124 3.876 11 C 0.111 3.889 12 H 0.091 0.909 13 O -0.567 6.567 14 C -0.116 4.116 15 C -0.125 4.125 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.114 4.114 19 H 0.259 0.741 20 H 0.366 0.634 21 H 0.032 0.968 22 H 0.031 0.969 23 H 0.379 0.621 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.670 -8.673 1.712 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.370 4.370 8 H 0.075 0.925 9 N -0.402 5.402 10 C -0.003 4.003 11 C 0.052 3.948 12 H 0.108 0.892 13 O -0.375 6.375 14 C -0.135 4.135 15 C -0.162 4.162 16 C -0.156 4.156 17 C -0.158 4.158 18 C -0.152 4.152 19 H 0.068 0.932 20 H 0.200 0.800 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.228 0.772 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.665 -8.320 1.304 20.477 hybrid contribution -0.510 0.650 0.240 0.860 sum 18.155 -7.671 1.544 19.770 Atomic orbital electron populations 1.69881 1.07037 1.26768 1.59595 1.25496 0.96137 1.01228 1.02503 0.85398 0.78548 0.79643 0.78175 1.20300 1.21882 1.18141 1.19081 0.82771 0.93546 1.41556 0.92489 1.42680 1.02425 1.04259 1.90838 1.21555 0.92025 0.87692 0.98987 1.22088 0.91048 0.94352 0.87309 0.89157 1.86525 1.85984 1.48758 1.16212 1.22376 0.96146 0.94857 1.00131 1.22449 0.98425 0.98281 0.97090 1.22473 0.93613 0.97708 1.01795 1.22322 0.98665 0.97185 0.97617 1.22089 0.93382 1.00651 0.99089 0.93227 0.80034 0.95033 0.95093 0.77153 0.89766 0.91868 0.91515 0.90884 0.90844 0.90777 0.91957 0.91120 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.31 13.97 21.65 0.30 -64.01 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 3 Si 0.96 47.44 27.73 68.60 1.90 49.34 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.26 -11.94 6.52 99.48 0.65 -11.29 16 7 C -0.24 -14.14 10.47 84.04 0.88 -13.26 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 9 N -0.76 -37.11 5.35 -343.45 -1.84 -38.94 16 10 C 0.12 4.75 5.61 86.38 0.48 5.24 16 11 C 0.11 3.36 2.61 30.60 0.08 3.44 16 12 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 13 O -0.57 -17.68 12.68 -148.98 -1.89 -19.56 16 14 C -0.12 -2.65 2.83 -10.07 -0.03 -2.68 16 15 C -0.13 -2.58 5.31 31.67 0.17 -2.41 16 16 C -0.12 -1.96 6.91 31.88 0.22 -1.74 16 17 C -0.12 -2.05 6.83 31.65 0.22 -1.84 16 18 C -0.11 -2.29 6.22 31.30 0.19 -2.10 16 19 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 20 H 0.37 17.65 5.53 -92.71 -0.51 17.14 16 21 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.03 1.19 7.44 -2.39 -0.02 1.17 16 23 H 0.38 9.94 6.91 -74.06 -0.51 9.43 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.34 5.81 -2.38 -0.01 1.33 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.34 7.42 -2.39 -0.02 1.32 16 Total: -1.00 -68.62 255.52 1.18 -67.44 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.02 Total: 24.39 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 2.68 Total: -18.65 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -1.54 Total: -102.96 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -1.89 Total: -19.56 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.90 Total: 49.34 kcal Total: -68.62 1.18 -67.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.778 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds