Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00484 * 2 1 4 4 H 1.48497 * 109.47465 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46885 * 299.99940 * 3 2 1 6 6 H 1.48500 * 109.47427 * 59.99921 * 3 2 1 7 7 C 1.37883 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99722 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46983 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.63563 * 304.60110 * 10 9 7 12 12 C 1.54264 * 109.63331 * 64.99890 * 10 9 7 13 13 C 1.45985 * 111.73646 * 197.74114 * 12 10 9 14 14 O 1.44228 * 112.09906 * 299.93761 * 13 12 10 15 15 C 1.39965 * 112.37448 * 82.57500 * 14 13 12 16 16 C 1.54351 * 112.57508 * 262.88129 * 15 14 13 17 17 C 1.50289 * 109.63599 * 183.99525 * 10 9 7 18 18 H 1.08998 * 108.78307 * 269.10993 * 17 10 9 19 19 N 1.46902 * 108.78520 * 27.31168 * 17 10 9 20 20 H 0.96998 * 119.99209 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47183 * 60.00287 * 9 7 2 22 22 H 1.08992 * 109.46976 * 299.99980 * 9 7 2 23 23 H 1.09011 * 109.02807 * 77.16697 * 12 10 9 24 24 H 1.09004 * 108.97290 * 318.28673 * 12 10 9 25 25 H 1.09000 * 108.95944 * 179.25991 * 13 12 10 26 26 H 1.09005 * 108.88626 * 60.56256 * 13 12 10 27 27 H 1.08999 * 108.86157 * 23.68162 * 15 14 13 28 28 H 1.09002 * 108.86215 * 142.08396 * 15 14 13 29 29 H 1.09004 * 109.08411 * 161.19541 * 16 15 14 30 30 H 1.08993 * 109.08838 * 280.17584 * 16 15 14 31 31 H 1.00895 * 110.99848 * 179.97438 * 19 17 10 32 32 H 1.00890 * 111.00435 * 303.96169 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9262 -3.5618 -0.8456 12 6 3.0487 -3.6571 1.3163 13 6 4.2660 -4.4558 1.2098 14 8 3.9842 -5.8352 0.8967 15 6 3.7843 -6.0405 -0.4733 16 6 2.2897 -6.0544 -0.8584 17 6 1.4999 -4.9636 -0.0992 18 1 1.2852 -5.3222 0.9075 19 7 0.2280 -4.7288 -0.7957 20 1 -0.4849 0.8401 -0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 2.4262 -4.0627 2.1140 24 1 3.3179 -2.6301 1.5632 25 1 4.8033 -4.4104 2.1571 26 1 4.8958 -4.0362 0.4254 27 1 4.2831 -5.2440 -1.0254 28 1 4.2298 -6.9945 -0.7554 29 1 2.1963 -5.8808 -1.9305 30 1 1.8689 -7.0309 -0.6189 31 1 -0.3007 -5.5839 -0.8809 32 1 -0.3119 -4.0141 -0.3315 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = -55.257096 kcal Electronic energy + Delta-G solvation = -13510.192682 eV Core-core repulsion = 11277.302586 eV Total energy + Delta-G solvation = -2232.890096 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.35075 -35.98304 -33.27221 -32.14476 -29.90781 -28.61616 -25.28547 -23.86463 -21.99532 -20.75070 -18.56834 -16.77520 -15.92388 -15.71442 -14.99871 -14.71065 -14.43877 -13.99264 -13.03361 -12.53234 -12.45310 -12.20167 -11.92148 -11.33954 -11.05863 -10.80166 -10.66726 -10.44891 -10.13115 -10.09954 -9.64682 -9.35469 -8.99232 -8.92766 -8.33415 -7.92547 -5.97126 -3.97499 3.31502 3.39440 3.42488 4.21759 4.47739 4.97143 5.29060 5.32501 5.38951 5.44980 5.61825 5.74609 5.85414 5.98825 6.02288 6.08993 6.20762 6.43849 6.55321 6.64095 6.79968 7.03712 7.17692 7.58760 7.71751 7.80594 7.93191 8.03387 8.12086 8.48986 9.09305 9.65224 11.14200 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044164 B = 0.010411 C = 0.008965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.849265 B = 2688.921826 C = 3122.563070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.073 4.073 11 H 0.059 0.941 12 C -0.149 4.149 13 C 0.063 3.937 14 O -0.379 6.379 15 C 0.065 3.935 16 C -0.140 4.140 17 C 0.103 3.897 18 H 0.023 0.977 19 N -0.848 5.848 20 H 0.258 0.742 21 H 0.041 0.959 22 H 0.008 0.992 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.320 0.680 32 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -9.498 0.425 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.092 4.092 11 H 0.078 0.922 12 C -0.187 4.187 13 C -0.013 4.013 14 O -0.298 6.298 15 C -0.013 4.013 16 C -0.179 4.179 17 C -0.008 4.008 18 H 0.041 0.959 19 N -0.380 5.380 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.467 -9.291 -0.037 10.781 hybrid contribution -0.101 0.873 0.694 1.120 sum 5.366 -8.419 0.657 10.005 Atomic orbital electron populations 1.69965 1.05951 1.26287 1.51213 1.25001 0.94813 0.99052 0.95596 0.86612 0.80116 0.84200 0.77506 1.19854 1.21101 1.21171 1.21280 0.92877 0.91067 1.49926 0.92805 1.19145 0.93925 0.90526 0.97574 1.20949 0.98034 0.94685 0.95543 0.92222 1.21226 0.97035 1.01349 0.99114 1.21660 0.97428 0.81538 1.00650 1.87696 1.91270 1.26925 1.23929 1.22215 0.95278 1.00661 0.83193 1.22658 0.95795 0.98297 1.01123 1.21173 0.90534 0.95212 0.93901 0.95873 1.59060 1.07347 1.12556 1.59084 0.93195 0.94120 0.97340 0.92529 0.89132 0.90340 0.93248 0.93090 0.91136 0.90662 0.92805 0.86914 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.17 8.15 -34.44 -0.28 -14.45 16 8 H 0.05 1.45 7.23 -52.49 -0.38 1.07 16 9 C 0.03 0.64 3.20 -27.88 -0.09 0.55 16 10 C -0.07 -1.51 1.75 -91.31 -0.16 -1.67 16 11 H 0.06 1.28 7.09 -51.93 -0.37 0.91 16 12 C -0.15 -2.81 4.85 -29.39 -0.14 -2.95 16 13 C 0.06 1.01 6.12 33.83 0.21 1.21 16 14 O -0.38 -6.24 10.35 -32.84 -0.34 -6.58 16 15 C 0.06 0.95 6.09 37.87 0.23 1.18 16 16 C -0.14 -2.17 5.80 -25.18 -0.15 -2.31 16 17 C 0.10 1.87 2.77 -68.22 -0.19 1.68 16 18 H 0.02 0.44 7.33 -51.93 -0.38 0.06 16 19 N -0.85 -15.32 8.34 -5.10 -0.04 -15.37 16 20 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 21 H 0.04 1.10 6.59 -51.93 -0.34 0.76 16 22 H 0.01 0.22 7.98 -51.93 -0.41 -0.19 16 23 H 0.06 1.07 7.53 -51.92 -0.39 0.68 16 24 H 0.09 1.84 6.65 -51.93 -0.35 1.49 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.76 7.34 -51.93 -0.38 0.38 16 27 H 0.05 0.74 6.54 -51.93 -0.34 0.40 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.32 4.85 8.99 -39.29 -0.35 4.50 16 32 H 0.36 6.99 6.67 -39.30 -0.26 6.73 16 LS Contribution 247.83 15.07 3.73 3.73 Total: -1.00 -29.53 247.83 -6.38 -35.92 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.78 Total: 6.83 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.67 Total: -15.26 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.69 Total: -41.19 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.34 Total: -6.58 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.53 -6.38 -35.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.341 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds