Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00484 * 2 1 4 4 H 1.48497 * 109.47465 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46885 * 299.99940 * 3 2 1 6 6 H 1.48500 * 109.47427 * 59.99921 * 3 2 1 7 7 C 1.37883 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99722 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46983 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.63563 * 304.60110 * 10 9 7 12 12 C 1.54264 * 109.63331 * 64.99890 * 10 9 7 13 13 C 1.45985 * 111.73646 * 197.74114 * 12 10 9 14 14 O 1.44228 * 112.09906 * 299.93761 * 13 12 10 15 15 C 1.39965 * 112.37448 * 82.57500 * 14 13 12 16 16 C 1.54351 * 112.57508 * 262.88129 * 15 14 13 17 17 C 1.50289 * 109.63599 * 183.99525 * 10 9 7 18 18 H 1.08998 * 108.78307 * 269.10993 * 17 10 9 19 19 N 1.46902 * 108.78520 * 27.31168 * 17 10 9 20 20 H 0.96998 * 119.99209 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47183 * 60.00287 * 9 7 2 22 22 H 1.08992 * 109.46976 * 299.99980 * 9 7 2 23 23 H 1.09011 * 109.02807 * 77.16697 * 12 10 9 24 24 H 1.09004 * 108.97290 * 318.28673 * 12 10 9 25 25 H 1.09000 * 108.95944 * 179.25991 * 13 12 10 26 26 H 1.09005 * 108.88626 * 60.56256 * 13 12 10 27 27 H 1.08999 * 108.86157 * 23.68162 * 15 14 13 28 28 H 1.09002 * 108.86215 * 142.08396 * 15 14 13 29 29 H 1.09004 * 109.08411 * 161.19541 * 16 15 14 30 30 H 1.08993 * 109.08838 * 280.17584 * 16 15 14 31 31 H 1.00895 * 110.99848 * 179.97438 * 19 17 10 32 32 H 1.00890 * 111.00435 * 303.96169 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9262 -3.5618 -0.8456 12 6 3.0487 -3.6571 1.3163 13 6 4.2660 -4.4558 1.2098 14 8 3.9842 -5.8352 0.8967 15 6 3.7843 -6.0405 -0.4733 16 6 2.2897 -6.0544 -0.8584 17 6 1.4999 -4.9636 -0.0992 18 1 1.2852 -5.3222 0.9075 19 7 0.2280 -4.7288 -0.7957 20 1 -0.4849 0.8401 -0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 2.4262 -4.0627 2.1140 24 1 3.3179 -2.6301 1.5632 25 1 4.8033 -4.4104 2.1571 26 1 4.8958 -4.0362 0.4254 27 1 4.2831 -5.2440 -1.0254 28 1 4.2298 -6.9945 -0.7554 29 1 2.1963 -5.8808 -1.9305 30 1 1.8689 -7.0309 -0.6189 31 1 -0.3007 -5.5839 -0.8809 32 1 -0.3119 -4.0141 -0.3315 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = -76.092623 kcal Electronic energy + Delta-G solvation = -13511.096178 eV Core-core repulsion = 11277.302586 eV Total energy + Delta-G solvation = -2233.793592 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.73044 -37.46782 -35.06933 -33.88586 -31.24275 -30.44099 -27.04539 -25.30827 -23.71201 -22.19248 -20.14909 -18.68736 -17.34788 -17.12511 -16.52747 -16.38046 -16.08252 -15.43314 -14.41850 -14.29517 -13.99979 -13.86381 -13.64492 -12.92726 -12.75819 -12.57965 -12.31171 -12.23679 -11.76556 -11.44157 -11.32184 -10.95041 -10.89211 -10.50519 -10.46702 -9.42771 -8.14306 -6.21979 1.39747 1.40954 1.52674 2.43305 3.01028 3.19552 3.58455 3.93811 4.02966 4.15517 4.25114 4.36154 4.56842 4.64218 4.72539 4.73424 4.91477 5.03768 5.15740 5.18186 5.21979 5.35951 5.42811 5.62384 5.86876 5.92070 6.28671 6.36176 6.38823 6.68986 6.97031 7.45031 8.97331 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044164 B = 0.010411 C = 0.008965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.849265 B = 2688.921826 C = 3122.563070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.036 3.964 10 C -0.068 4.068 11 H 0.053 0.947 12 C -0.141 4.141 13 C 0.065 3.935 14 O -0.386 6.386 15 C 0.059 3.941 16 C -0.135 4.135 17 C 0.103 3.897 18 H 0.016 0.984 19 N -0.854 5.854 20 H 0.260 0.740 21 H 0.016 0.984 22 H -0.018 1.018 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.338 0.662 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -10.178 0.297 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.086 4.086 11 H 0.071 0.929 12 C -0.180 4.180 13 C -0.010 4.010 14 O -0.305 6.305 15 C -0.019 4.019 16 C -0.173 4.173 17 C -0.008 4.008 18 H 0.034 0.966 19 N -0.386 5.386 20 H 0.069 0.931 21 H 0.034 0.966 22 H 0.000 1.000 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.089 -10.000 -0.172 12.259 hybrid contribution -0.660 1.057 0.724 1.441 sum 6.429 -8.943 0.552 11.027 Atomic orbital electron populations 1.70097 1.07573 1.27257 1.52270 1.25883 0.95688 1.02901 0.95306 0.85528 0.79261 0.79540 0.77493 1.18591 1.20810 1.20714 1.21684 0.93297 0.92248 1.49338 0.92385 1.18956 0.94146 0.91960 0.95040 1.20818 0.97193 0.94222 0.96411 0.92851 1.21137 0.98146 1.00986 0.97682 1.21625 0.95891 0.81205 1.02323 1.87697 1.91240 1.26629 1.24936 1.22398 0.94654 1.02353 0.82456 1.22630 0.96202 0.97791 1.00667 1.21153 0.90635 0.94768 0.94229 0.96614 1.59032 1.07595 1.13238 1.58784 0.93115 0.96565 0.99983 0.93087 0.90954 0.88015 0.92345 0.93067 0.88076 0.90523 0.90993 0.84962 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 3 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.53 -29.48 8.15 25.60 0.21 -29.27 16 8 H 0.06 3.12 7.23 -2.91 -0.02 3.10 16 9 C 0.04 1.88 3.20 29.85 0.10 1.97 16 10 C -0.07 -2.79 1.75 -11.24 -0.02 -2.81 16 11 H 0.05 2.26 7.09 -2.39 -0.02 2.24 16 12 C -0.14 -5.24 4.85 28.87 0.14 -5.10 16 13 C 0.07 1.94 6.12 69.83 0.43 2.37 16 14 O -0.39 -11.60 10.35 -140.41 -1.45 -13.06 16 15 C 0.06 1.56 6.09 72.44 0.44 2.00 16 16 C -0.13 -3.84 5.80 31.60 0.18 -3.66 16 17 C 0.10 3.69 2.77 44.58 0.12 3.81 16 18 H 0.02 0.59 7.33 -2.39 -0.02 0.57 16 19 N -0.85 -30.90 8.34 -170.06 -1.42 -32.32 16 20 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 21 H 0.02 0.91 6.59 -2.39 -0.02 0.89 16 22 H -0.02 -1.02 7.98 -2.39 -0.02 -1.04 16 23 H 0.05 1.91 7.53 -2.38 -0.02 1.89 16 24 H 0.07 2.93 6.65 -2.39 -0.02 2.91 16 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.06 1.65 7.34 -2.38 -0.02 1.63 16 27 H 0.05 1.35 6.54 -2.39 -0.02 1.34 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.18 8.13 -2.38 -0.02 2.16 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.34 9.98 8.99 -89.70 -0.81 9.18 16 32 H 0.34 13.96 6.67 -89.70 -0.60 13.36 16 Total: -1.00 -62.88 247.83 1.21 -61.67 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.29 Total: 23.69 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 2.06 Total: -30.24 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.13 Total: -88.40 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.45 Total: -13.06 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.88 1.21 -61.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.422 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds