Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.02801 * 306.04327 * 10 9 7 12 12 C 1.45872 * 109.04056 * 64.99362 * 10 9 7 13 13 C 1.53982 * 112.66740 * 182.05596 * 12 10 9 14 14 N 1.44301 * 108.31528 * 278.59526 * 13 12 10 15 15 C 1.47937 * 113.64689 * 95.39891 * 14 13 12 16 16 C 1.53919 * 113.33060 * 318.14220 * 15 14 13 17 17 C 1.50540 * 112.93716 * 317.75032 * 16 15 14 18 18 H 1.09001 * 109.57470 * 331.93476 * 17 16 15 19 19 O 1.42903 * 109.57000 * 211.56350 * 17 16 15 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.08995 * 108.84868 * 302.88369 * 12 10 9 24 24 H 1.09001 * 108.84115 * 61.24014 * 12 10 9 25 25 H 1.09000 * 109.69542 * 38.29967 * 13 12 10 26 26 H 1.09006 * 109.69565 * 158.88634 * 13 12 10 27 27 H 1.00903 * 110.99816 * 329.43916 * 14 13 12 28 28 H 1.09008 * 108.71293 * 79.13505 * 15 14 13 29 29 H 1.09002 * 108.70858 * 197.27280 * 15 14 13 30 30 H 1.09000 * 108.79224 * 78.64519 * 16 15 14 31 31 H 1.09001 * 108.78657 * 196.85874 * 16 15 14 32 32 H 0.96701 * 113.99689 * 60.62128 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9372 -3.5382 -0.8327 12 6 2.9977 -3.6450 1.2502 13 6 4.0623 -4.7555 1.3172 14 7 3.4128 -5.9832 1.7084 15 6 3.0324 -6.8433 0.5664 16 6 2.4358 -6.0584 -0.6156 17 6 1.4715 -4.9870 -0.1814 18 1 1.0094 -5.2728 0.7635 19 8 0.4622 -4.8187 -1.1790 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 3.4906 -2.6781 1.3513 24 1 2.3034 -3.7724 2.0808 25 1 4.5249 -4.8804 0.3382 26 1 4.8226 -4.4916 2.0523 27 1 2.6185 -5.7987 2.3026 28 1 3.9176 -7.3771 0.2205 29 1 2.2966 -7.5717 0.9072 30 1 3.2482 -5.5940 -1.1745 31 1 1.9144 -6.7550 -1.2721 32 1 -0.0634 -5.6133 -1.3447 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = -70.138480 kcal Electronic energy + Delta-G solvation = -13482.627226 eV Core-core repulsion = 11249.091824 eV Total energy + Delta-G solvation = -2233.535401 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.34495 -35.84533 -34.32679 -32.04616 -31.00417 -27.45164 -24.90527 -23.93146 -22.09707 -20.30581 -19.58363 -16.90138 -16.73558 -15.62002 -14.99759 -14.75592 -13.71565 -13.60695 -13.25229 -12.97413 -12.83555 -12.13035 -11.74360 -11.63783 -11.15981 -10.94998 -10.84911 -10.61973 -10.13216 -10.08462 -9.84342 -9.65820 -9.29728 -8.40271 -8.24415 -8.12120 -6.27619 -3.95512 3.46418 3.48888 3.67265 4.40556 4.58623 4.62360 4.94181 5.16163 5.26169 5.34317 5.49240 5.50119 5.64352 5.79946 5.83085 5.96841 6.06740 6.20457 6.36625 6.58351 6.73491 6.89810 7.10276 7.31290 7.52547 7.56159 7.75341 8.05600 8.30701 8.55989 8.97481 9.76414 11.12902 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047991 B = 0.009900 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.305448 B = 2827.552657 C = 3228.525128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.599 4.599 8 H 0.047 0.953 9 C 0.019 3.981 10 C -0.066 4.066 11 H 0.060 0.940 12 C -0.137 4.137 13 C 0.059 3.941 14 N -0.697 5.697 15 C 0.066 3.934 16 C -0.185 4.185 17 C 0.108 3.892 18 H 0.042 0.958 19 O -0.552 6.552 20 H 0.269 0.731 21 H 0.000 1.000 22 H 0.022 0.978 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.341 0.659 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.938 -12.030 1.235 13.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.637 4.637 8 H 0.065 0.935 9 C -0.017 4.017 10 C -0.085 4.085 11 H 0.078 0.922 12 C -0.176 4.176 13 C -0.070 4.070 14 N -0.327 5.327 15 C -0.064 4.064 16 C -0.224 4.224 17 C 0.049 3.951 18 H 0.060 0.940 19 O -0.356 6.356 20 H 0.080 0.920 21 H 0.019 0.981 22 H 0.041 0.959 23 H 0.104 0.896 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.599 -10.083 1.307 11.607 hybrid contribution -0.766 -1.797 -0.407 1.996 sum 4.834 -11.880 0.900 12.858 Atomic orbital electron populations 1.70752 1.06890 1.30672 1.46804 1.25796 0.96603 1.02589 0.94070 0.83586 0.74907 0.75608 0.76393 1.20831 1.21563 1.21533 1.22082 0.94008 0.92195 1.55427 0.93463 1.19179 0.94151 0.91935 0.96480 1.20064 0.97505 0.93503 0.97386 0.92207 1.21153 0.97774 1.00752 0.97907 1.21866 0.96729 0.87943 1.00459 1.59678 1.33050 1.20403 1.19575 1.22255 0.99297 0.95039 0.89773 1.22780 1.00917 0.98993 0.99729 1.21671 0.87840 0.95940 0.89600 0.94034 1.86737 1.49415 1.39047 1.60353 0.92023 0.98142 0.95925 0.89604 0.92748 0.91726 0.91197 0.84016 0.91423 0.91876 0.91424 0.91715 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.99 13.65 55.43 0.76 -28.24 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.95 29.90 -169.99 -5.08 20.86 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.60 -17.37 8.31 -34.44 -0.29 -17.65 16 8 H 0.05 1.33 6.96 -52.48 -0.37 0.97 16 9 C 0.02 0.52 3.50 -27.88 -0.10 0.42 16 10 C -0.07 -1.39 1.61 -93.19 -0.15 -1.54 16 11 H 0.06 1.33 7.58 -51.93 -0.39 0.94 16 12 C -0.14 -2.55 4.40 -29.59 -0.13 -2.68 16 13 C 0.06 0.90 6.27 -4.70 -0.03 0.87 16 14 N -0.70 -9.55 6.54 -113.78 -0.74 -10.29 16 15 C 0.07 0.81 6.44 -2.77 -0.02 0.80 16 16 C -0.18 -2.58 5.01 -27.48 -0.14 -2.72 16 17 C 0.11 1.89 2.81 -27.16 -0.08 1.81 16 18 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 19 O -0.55 -10.20 11.79 -35.23 -0.42 -10.61 16 20 H 0.27 8.60 7.22 -40.82 -0.29 8.30 16 21 H 0.00 0.01 8.00 -51.93 -0.42 -0.41 16 22 H 0.02 0.66 6.92 -51.93 -0.36 0.30 16 23 H 0.09 1.78 6.59 -51.93 -0.34 1.44 16 24 H 0.05 1.01 7.51 -51.93 -0.39 0.62 16 25 H 0.06 0.98 6.79 -51.93 -0.35 0.63 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.34 4.59 7.57 -39.29 -0.30 4.29 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.03 6.66 -51.93 -0.35 0.69 16 31 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 32 H 0.36 4.66 8.94 45.56 0.41 5.07 16 LS Contribution 247.49 15.07 3.73 3.73 Total: -1.00 -32.51 247.49 -6.79 -39.29 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.01 Total: 5.66 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -1.02 Total: -20.41 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.01 Total: -38.53 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.42 Total: -10.61 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.51 -6.79 -39.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.845 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds