Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.02801 * 306.04327 * 10 9 7 12 12 C 1.45872 * 109.04056 * 64.99362 * 10 9 7 13 13 C 1.53982 * 112.66740 * 182.05596 * 12 10 9 14 14 N 1.44301 * 108.31528 * 278.59526 * 13 12 10 15 15 C 1.47937 * 113.64689 * 95.39891 * 14 13 12 16 16 C 1.53919 * 113.33060 * 318.14220 * 15 14 13 17 17 C 1.50540 * 112.93716 * 317.75032 * 16 15 14 18 18 H 1.09001 * 109.57470 * 331.93476 * 17 16 15 19 19 O 1.42903 * 109.57000 * 211.56350 * 17 16 15 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.08995 * 108.84868 * 302.88369 * 12 10 9 24 24 H 1.09001 * 108.84115 * 61.24014 * 12 10 9 25 25 H 1.09000 * 109.69542 * 38.29967 * 13 12 10 26 26 H 1.09006 * 109.69565 * 158.88634 * 13 12 10 27 27 H 1.00903 * 110.99816 * 329.43916 * 14 13 12 28 28 H 1.09008 * 108.71293 * 79.13505 * 15 14 13 29 29 H 1.09002 * 108.70858 * 197.27280 * 15 14 13 30 30 H 1.09000 * 108.79224 * 78.64519 * 16 15 14 31 31 H 1.09001 * 108.78657 * 196.85874 * 16 15 14 32 32 H 0.96701 * 113.99689 * 60.62128 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9372 -3.5382 -0.8327 12 6 2.9977 -3.6450 1.2502 13 6 4.0623 -4.7555 1.3172 14 7 3.4128 -5.9832 1.7084 15 6 3.0324 -6.8433 0.5664 16 6 2.4358 -6.0584 -0.6156 17 6 1.4715 -4.9870 -0.1814 18 1 1.0094 -5.2728 0.7635 19 8 0.4622 -4.8187 -1.1790 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 3.4906 -2.6781 1.3513 24 1 2.3034 -3.7724 2.0808 25 1 4.5249 -4.8804 0.3382 26 1 4.8226 -4.4916 2.0523 27 1 2.6185 -5.7987 2.3026 28 1 3.9176 -7.3771 0.2205 29 1 2.2966 -7.5717 0.9072 30 1 3.2482 -5.5940 -1.1745 31 1 1.9144 -6.7550 -1.2721 32 1 -0.0634 -5.6133 -1.3447 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261251282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = -95.938701 kcal Electronic energy + Delta-G solvation = -13483.746007 eV Core-core repulsion = 11249.091824 eV Total energy + Delta-G solvation = -2234.654183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74328 -37.18575 -36.20537 -33.95887 -32.26129 -29.27443 -26.49790 -25.46478 -23.92224 -21.66059 -21.05954 -18.92463 -18.30371 -16.85448 -16.47430 -16.19056 -15.63329 -15.00127 -14.58870 -14.56045 -14.33526 -13.90479 -13.46052 -13.20709 -12.80610 -12.64733 -12.26115 -12.00470 -11.96701 -11.76133 -11.53956 -11.28445 -10.85534 -10.54742 -10.50986 -9.29484 -8.68559 -6.37560 1.48972 1.58395 1.77224 2.55604 3.16046 3.21130 3.42465 3.66021 3.83828 4.06866 4.09679 4.24127 4.31331 4.48791 4.60604 4.62216 4.89631 4.94267 4.98440 5.08876 5.18775 5.22971 5.38319 5.42996 5.64979 6.00609 6.18120 6.20323 6.43833 6.57809 6.92462 7.44773 8.71427 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047991 B = 0.009900 C = 0.008671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.305448 B = 2827.552657 C = 3228.525128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.045 4.045 3 Si 1.117 2.883 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.610 4.610 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.061 4.061 11 H 0.043 0.957 12 C -0.131 4.131 13 C 0.075 3.925 14 N -0.695 5.695 15 C 0.067 3.933 16 C -0.175 4.175 17 C 0.113 3.887 18 H 0.050 0.950 19 O -0.583 6.583 20 H 0.252 0.748 21 H -0.024 1.024 22 H -0.012 1.012 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.343 0.657 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -13.304 1.530 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.241 4.241 3 Si 0.938 3.062 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.648 4.648 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.079 4.079 11 H 0.062 0.938 12 C -0.170 4.170 13 C -0.055 4.055 14 N -0.325 5.325 15 C -0.062 4.062 16 C -0.214 4.214 17 C 0.054 3.946 18 H 0.067 0.933 19 O -0.390 6.390 20 H 0.061 0.939 21 H -0.006 1.006 22 H 0.006 0.994 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.162 0.838 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.106 -11.411 1.602 13.538 hybrid contribution -1.298 -1.440 -0.525 2.009 sum 5.808 -12.851 1.077 14.144 Atomic orbital electron populations 1.70904 1.08055 1.29624 1.49198 1.27489 0.96642 1.07016 0.92986 0.82952 0.74139 0.71048 0.78076 1.20917 1.19548 1.19042 1.22498 0.94489 0.93365 1.54418 0.92989 1.19051 0.94574 0.94025 0.93528 1.19986 0.96352 0.93559 0.98042 0.93815 1.21071 0.98412 1.01142 0.96366 1.21705 0.95607 0.87054 1.01088 1.59713 1.33270 1.19377 1.20121 1.22366 1.00524 0.94732 0.88578 1.22648 0.99672 0.98293 1.00794 1.21563 0.88246 0.94706 0.90064 0.93257 1.86675 1.50300 1.41451 1.60623 0.93865 1.00566 0.99380 0.92301 0.93071 0.91537 0.89879 0.83756 0.89941 0.89543 0.92768 0.89196 0.76454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.35 13.65 21.45 0.29 -61.06 16 2 C -0.04 -2.71 5.46 84.65 0.46 -2.25 16 3 Si 1.12 52.08 29.90 68.60 2.05 54.13 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.61 -36.24 8.31 25.60 0.21 -36.02 16 8 H 0.05 2.98 6.96 -2.91 -0.02 2.96 16 9 C 0.03 1.40 3.50 29.85 0.10 1.51 16 10 C -0.06 -2.58 1.61 -12.46 -0.02 -2.60 16 11 H 0.04 1.97 7.58 -2.39 -0.02 1.96 16 12 C -0.13 -4.85 4.40 28.74 0.13 -4.73 16 13 C 0.08 2.12 6.27 87.12 0.55 2.67 16 14 N -0.69 -16.94 6.54 -513.90 -3.36 -20.30 16 15 C 0.07 1.40 6.44 86.41 0.56 1.96 16 16 C -0.17 -4.41 5.01 30.11 0.15 -4.26 16 17 C 0.11 3.82 2.81 30.32 0.09 3.90 16 18 H 0.05 1.59 7.44 -2.39 -0.02 1.57 16 19 O -0.58 -21.39 11.79 -148.98 -1.76 -23.15 16 20 H 0.25 16.88 7.22 -92.71 -0.67 16.21 16 21 H -0.02 -1.43 8.00 -2.39 -0.02 -1.45 16 22 H -0.01 -0.75 6.92 -2.39 -0.02 -0.77 16 23 H 0.06 2.47 6.59 -2.39 -0.02 2.45 16 24 H 0.05 1.90 7.51 -2.39 -0.02 1.88 16 25 H 0.07 1.87 6.79 -2.39 -0.02 1.86 16 26 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.34 8.32 7.57 -89.69 -0.68 7.64 16 28 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.53 6.66 -2.39 -0.02 1.52 16 31 H 0.09 1.86 7.87 -2.39 -0.02 1.84 16 32 H 0.39 9.43 8.94 -74.06 -0.66 8.77 16 Total: -1.00 -72.09 247.49 -0.68 -72.77 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.12 Total: 17.43 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 2.22 Total: -39.83 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.07 Total: -81.36 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.76 Total: -23.15 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.05 Total: 54.13 kcal Total: -72.09 -0.68 -72.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.173 kcal (2) G-P(sol) polarization free energy of solvation -72.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds