Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.48616 * 2 1 4 4 C 1.53084 * 109.47950 * 239.97054 * 2 1 3 5 5 C 1.53181 * 109.16230 * 297.62409 * 4 2 1 6 6 N 1.46893 * 109.54515 * 62.89043 * 5 4 2 7 7 C 1.50706 * 109.54296 * 183.15907 * 5 4 2 8 8 H 1.08001 * 119.99655 * 359.54772 * 7 5 4 9 9 C 1.37874 * 119.99837 * 179.56097 * 7 5 4 10 10 N 1.31509 * 120.00310 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99973 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47286 * 59.99405 * 11 9 7 13 13 H 1.48498 * 109.47334 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46997 * 299.99789 * 11 9 7 15 15 C 1.53176 * 109.03591 * 303.01822 * 5 4 2 16 16 C 1.53097 * 109.16083 * 56.98508 * 15 5 4 17 17 O 1.42905 * 109.48109 * 120.02424 * 2 1 3 18 18 H 1.08999 * 109.47074 * 309.50191 * 1 2 3 19 19 H 1.08997 * 109.47036 * 69.50263 * 1 2 3 20 20 H 1.09002 * 109.47024 * 189.50554 * 1 2 3 21 21 H 1.08998 * 109.46756 * 180.02562 * 3 2 1 22 22 H 1.09002 * 109.46906 * 300.02328 * 3 2 1 23 23 H 1.08994 * 109.47345 * 60.02651 * 3 2 1 24 24 H 1.08993 * 109.52741 * 57.52906 * 4 2 1 25 25 H 1.09006 * 109.52389 * 177.71995 * 4 2 1 26 26 H 1.00895 * 111.00157 * 66.33621 * 6 5 4 27 27 H 1.00896 * 111.00239 * 190.29065 * 6 5 4 28 28 H 0.97002 * 120.00411 * 180.02562 * 10 9 7 29 29 H 1.09004 * 109.52881 * 297.07676 * 15 5 4 30 30 H 1.09002 * 109.52553 * 176.88576 * 15 5 4 31 31 H 1.09001 * 109.48293 * 62.36993 * 16 15 5 32 32 H 1.08997 * 109.47835 * 182.39597 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 1.5757 -2.1814 -1.2120 6 7 0.1081 -2.2307 -1.2507 7 6 2.1383 -2.9203 -2.3989 8 1 2.7590 -2.4007 -3.1138 9 6 1.8603 -4.2596 -2.5721 10 7 1.1047 -4.8924 -1.7014 11 14 2.5570 -5.1754 -4.0436 12 1 4.0405 -5.1189 -4.0049 13 1 2.1148 -6.5923 -3.9996 14 1 2.0701 -4.5431 -5.2960 15 6 2.0765 -2.8322 0.0810 16 6 1.5645 -2.0284 1.2792 17 8 2.0066 -0.6741 1.1665 18 1 -0.3633 0.6537 0.7929 19 1 -0.3633 0.3598 -0.9626 20 1 -0.3633 -1.0136 0.1697 21 1 3.1304 1.4420 -0.0005 22 1 1.6769 1.9564 -0.8898 23 1 1.6777 1.9561 0.8902 24 1 1.6421 -0.2359 -2.1398 25 1 3.1298 -0.6874 -1.2709 26 1 -0.2418 -1.8950 -2.1354 27 1 -0.2275 -3.1628 -1.0594 28 1 0.9095 -5.8347 -1.8230 29 1 3.1665 -2.8400 0.0866 30 1 1.7038 -3.8546 0.1423 31 1 0.4750 -2.0549 1.2959 32 1 1.9529 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258026.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = -52.159651 kcal Electronic energy + Delta-G solvation = -14068.151647 eV Core-core repulsion = 11835.395867 eV Total energy + Delta-G solvation = -2232.755781 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.11396 -34.83570 -32.72045 -31.40434 -28.45028 -27.42687 -26.25877 -25.01137 -22.25799 -20.02100 -17.79356 -16.51491 -15.30009 -14.86145 -14.57386 -14.03530 -13.72939 -13.34115 -12.69788 -12.19316 -11.86149 -11.77463 -11.44540 -11.17038 -10.99739 -10.85260 -10.73083 -10.35741 -10.27135 -10.03459 -9.85110 -9.26614 -9.00686 -8.70003 -8.23522 -6.99239 -6.02986 -4.22424 3.22762 3.28228 3.31432 4.32033 4.67292 5.13118 5.67950 5.74231 5.97225 6.13501 6.24270 6.29480 6.35645 6.44893 6.47652 6.51039 6.61134 6.69849 6.78096 6.96917 7.09548 7.29623 7.50142 7.63974 7.77222 7.83690 8.19346 8.30163 8.72668 8.92889 9.09647 9.48811 10.88736 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054464 B = 0.012069 C = 0.011483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.974789 B = 2319.445641 C = 2437.887832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 C -0.136 4.136 4 C -0.117 4.117 5 C 0.236 3.764 6 N -0.837 5.837 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.069 3.931 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.278 1.278 15 C -0.134 4.134 16 C 0.062 3.938 17 O -0.393 6.393 18 H 0.023 0.977 19 H 0.048 0.952 20 H 0.116 0.884 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.315 0.685 27 H 0.347 0.653 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 5.449 2.307 5.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.079 3.921 3 C -0.193 4.193 4 C -0.155 4.155 5 C 0.145 3.855 6 N -0.366 5.366 7 C -0.579 4.579 8 H 0.070 0.930 9 C -0.133 4.133 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.204 1.204 15 C -0.172 4.172 16 C -0.014 4.014 17 O -0.313 6.313 18 H 0.042 0.958 19 H 0.067 0.933 20 H 0.134 0.866 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.124 0.876 27 H 0.162 0.838 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.893 5.861 3.099 6.690 hybrid contribution 0.524 -1.415 -1.931 2.450 sum -0.369 4.446 1.168 4.612 Atomic orbital electron populations 1.22736 0.95364 1.05615 0.99460 1.21334 0.93832 0.90799 0.86161 1.21778 1.01071 0.95324 1.01136 1.22129 0.99456 0.98139 0.95782 1.18241 0.85823 0.89075 0.92388 1.59766 1.10692 1.30519 1.35602 1.21851 1.31852 0.95011 1.09193 0.92973 1.24962 0.94808 0.97341 0.96211 1.69680 1.37770 1.10565 1.35188 0.86644 0.79552 0.78630 0.83056 1.20339 1.21300 1.20394 1.22151 0.99136 1.01793 0.94147 1.22611 0.98871 0.81761 0.98178 1.87752 1.74354 1.25601 1.43595 0.95782 0.93318 0.86589 0.92811 0.92020 0.92960 0.93036 0.92974 0.87585 0.83848 0.92635 0.93865 0.88614 0.92811 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 7.31 37.16 0.27 -2.97 16 2 C 0.12 2.31 1.11 -90.57 -0.10 2.21 16 3 C -0.14 -2.25 8.83 37.16 0.33 -1.92 16 4 C -0.12 -2.52 3.98 -26.59 -0.11 -2.63 16 5 C 0.24 5.57 0.53 -132.57 -0.07 5.50 16 6 N -0.84 -18.45 4.74 -0.04 0.00 -18.45 16 7 C -0.54 -14.18 8.13 -34.44 -0.28 -14.46 16 8 H 0.05 1.40 7.75 -52.49 -0.41 0.99 16 9 C 0.07 1.79 5.24 -17.82 -0.09 1.70 16 10 N -0.89 -23.37 9.73 55.43 0.54 -22.83 16 11 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C -0.13 -3.15 4.72 -26.59 -0.13 -3.28 16 16 C 0.06 1.29 6.44 37.21 0.24 1.53 16 17 O -0.39 -8.35 10.24 -35.23 -0.36 -8.71 16 18 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 19 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 20 H 0.12 2.32 3.72 -51.93 -0.19 2.13 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.31 6.88 8.96 -39.29 -0.35 6.53 16 27 H 0.35 8.21 7.14 -39.29 -0.28 7.93 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 29 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 2.43 6.18 -51.93 -0.32 2.11 16 31 H 0.05 1.11 5.93 -51.93 -0.31 0.80 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 243.07 15.07 3.66 3.66 Total: -1.00 -25.96 243.07 -5.91 -31.87 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -4.80 Total: 13.09 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 0.06 Total: -14.31 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.54 Total: -41.29 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.36 Total: -8.71 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -25.96 -5.91 -31.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258026.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.290 kcal (2) G-P(sol) polarization free energy of solvation -25.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds