Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.48616 * 2 1 4 4 C 1.53084 * 109.47950 * 239.97054 * 2 1 3 5 5 C 1.53181 * 109.16230 * 297.62409 * 4 2 1 6 6 N 1.46893 * 109.54515 * 62.89043 * 5 4 2 7 7 C 1.50706 * 109.54296 * 183.15907 * 5 4 2 8 8 H 1.08001 * 119.99655 * 359.54772 * 7 5 4 9 9 C 1.37874 * 119.99837 * 179.56097 * 7 5 4 10 10 N 1.31509 * 120.00310 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99973 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47286 * 59.99405 * 11 9 7 13 13 H 1.48498 * 109.47334 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46997 * 299.99789 * 11 9 7 15 15 C 1.53176 * 109.03591 * 303.01822 * 5 4 2 16 16 C 1.53097 * 109.16083 * 56.98508 * 15 5 4 17 17 O 1.42905 * 109.48109 * 120.02424 * 2 1 3 18 18 H 1.08999 * 109.47074 * 309.50191 * 1 2 3 19 19 H 1.08997 * 109.47036 * 69.50263 * 1 2 3 20 20 H 1.09002 * 109.47024 * 189.50554 * 1 2 3 21 21 H 1.08998 * 109.46756 * 180.02562 * 3 2 1 22 22 H 1.09002 * 109.46906 * 300.02328 * 3 2 1 23 23 H 1.08994 * 109.47345 * 60.02651 * 3 2 1 24 24 H 1.08993 * 109.52741 * 57.52906 * 4 2 1 25 25 H 1.09006 * 109.52389 * 177.71995 * 4 2 1 26 26 H 1.00895 * 111.00157 * 66.33621 * 6 5 4 27 27 H 1.00896 * 111.00239 * 190.29065 * 6 5 4 28 28 H 0.97002 * 120.00411 * 180.02562 * 10 9 7 29 29 H 1.09004 * 109.52881 * 297.07676 * 15 5 4 30 30 H 1.09002 * 109.52553 * 176.88576 * 15 5 4 31 31 H 1.09001 * 109.48293 * 62.36993 * 16 15 5 32 32 H 1.08997 * 109.47835 * 182.39597 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 1.5757 -2.1814 -1.2120 6 7 0.1081 -2.2307 -1.2507 7 6 2.1383 -2.9203 -2.3989 8 1 2.7590 -2.4007 -3.1138 9 6 1.8603 -4.2596 -2.5721 10 7 1.1047 -4.8924 -1.7014 11 14 2.5570 -5.1754 -4.0436 12 1 4.0405 -5.1189 -4.0049 13 1 2.1148 -6.5923 -3.9996 14 1 2.0701 -4.5431 -5.2960 15 6 2.0765 -2.8322 0.0810 16 6 1.5645 -2.0284 1.2792 17 8 2.0066 -0.6741 1.1665 18 1 -0.3633 0.6537 0.7929 19 1 -0.3633 0.3598 -0.9626 20 1 -0.3633 -1.0136 0.1697 21 1 3.1304 1.4420 -0.0005 22 1 1.6769 1.9564 -0.8898 23 1 1.6777 1.9561 0.8902 24 1 1.6421 -0.2359 -2.1398 25 1 3.1298 -0.6874 -1.2709 26 1 -0.2418 -1.8950 -2.1354 27 1 -0.2275 -3.1628 -1.0594 28 1 0.9095 -5.8347 -1.8230 29 1 3.1665 -2.8400 0.0866 30 1 1.7038 -3.8546 0.1423 31 1 0.4750 -2.0549 1.2959 32 1 1.9529 -2.4622 2.2006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258026.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = -68.661743 kcal Electronic energy + Delta-G solvation = -14068.867232 eV Core-core repulsion = 11835.395867 eV Total energy + Delta-G solvation = -2233.471365 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.79524 -36.65915 -34.32393 -33.32306 -30.23084 -29.13474 -27.69167 -26.92209 -24.01414 -21.72702 -19.52939 -18.45072 -16.99461 -16.67228 -16.29922 -15.85118 -15.38950 -15.06649 -14.41930 -13.91142 -13.42093 -13.30057 -13.02590 -12.85933 -12.81278 -12.60582 -12.38885 -12.15398 -12.06522 -11.79453 -11.60007 -11.08276 -10.78194 -10.55024 -9.99184 -8.85262 -7.98684 -6.27712 1.36739 1.39444 1.45328 2.38396 3.10037 3.11315 4.18652 4.23338 4.42767 4.44577 4.50500 4.70275 4.76078 4.87437 4.93194 4.98948 5.06499 5.13049 5.17139 5.38250 5.41839 5.49338 5.63677 5.84100 5.90193 6.06936 6.23822 6.64715 6.73920 7.02744 7.19204 7.47342 8.86362 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054464 B = 0.012069 C = 0.011483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.974789 B = 2319.445641 C = 2437.887832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 C -0.132 4.132 4 C -0.113 4.113 5 C 0.230 3.770 6 N -0.818 5.818 7 C -0.563 4.563 8 H 0.038 0.962 9 C 0.033 3.967 10 N -0.902 5.902 11 Si 0.946 3.054 12 H -0.282 1.282 13 H -0.283 1.283 14 H -0.276 1.276 15 C -0.129 4.129 16 C 0.069 3.931 17 O -0.400 6.400 18 H 0.040 0.960 19 H 0.054 0.946 20 H 0.101 0.899 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.316 0.684 27 H 0.337 0.663 28 H 0.264 0.736 29 H 0.022 0.978 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 6.270 2.421 6.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.073 3.927 3 C -0.189 4.189 4 C -0.151 4.151 5 C 0.138 3.862 6 N -0.345 5.345 7 C -0.602 4.602 8 H 0.056 0.944 9 C -0.168 4.168 10 N -0.541 5.541 11 Si 0.773 3.227 12 H -0.208 1.208 13 H -0.208 1.208 14 H -0.202 1.202 15 C -0.167 4.167 16 C -0.007 4.007 17 O -0.321 6.321 18 H 0.059 0.941 19 H 0.073 0.927 20 H 0.119 0.881 21 H 0.071 0.929 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.125 0.875 27 H 0.151 0.849 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.291 6.695 3.214 7.538 hybrid contribution 0.661 -1.679 -1.979 2.678 sum -0.630 5.016 1.235 5.204 Atomic orbital electron populations 1.22611 0.94376 1.05101 1.00438 1.21541 0.94667 0.92042 0.84497 1.21768 1.01084 0.93250 1.02797 1.22064 0.98474 0.97234 0.97336 1.18287 0.86409 0.90100 0.91420 1.59791 1.09627 1.29633 1.35480 1.22125 1.32247 0.95740 1.10118 0.94376 1.25508 0.95151 0.97912 0.98211 1.69768 1.37918 1.10588 1.35841 0.85820 0.78548 0.77709 0.80656 1.20768 1.20849 1.20158 1.22028 0.97683 1.01257 0.95766 1.22540 0.99051 0.81539 0.97612 1.87758 1.74704 1.25438 1.44179 0.94145 0.92656 0.88061 0.92903 0.90185 0.91493 0.92680 0.94515 0.87470 0.84896 0.92654 0.95933 0.90637 0.92386 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 7.31 71.98 0.53 -5.30 16 2 C 0.11 4.14 1.11 -10.76 -0.01 4.13 16 3 C -0.13 -3.99 8.83 71.98 0.64 -3.35 16 4 C -0.11 -4.78 3.98 30.68 0.12 -4.66 16 5 C 0.23 10.79 0.53 2.90 0.00 10.79 16 6 N -0.82 -35.57 4.74 -154.05 -0.73 -36.29 16 7 C -0.56 -29.73 8.13 25.60 0.21 -29.52 16 8 H 0.04 2.07 7.75 -2.91 -0.02 2.04 16 9 C 0.03 1.71 5.24 84.65 0.44 2.16 16 10 N -0.90 -47.15 9.73 21.45 0.21 -46.94 16 11 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 15 C -0.13 -6.07 4.72 30.69 0.14 -5.93 16 16 C 0.07 2.79 6.44 72.01 0.46 3.25 16 17 O -0.40 -16.32 10.24 -148.98 -1.53 -17.84 16 18 H 0.04 1.26 8.12 -2.39 -0.02 1.24 16 19 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 20 H 0.10 3.85 3.72 -2.39 -0.01 3.84 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.32 13.56 8.96 -89.70 -0.80 12.76 16 27 H 0.34 15.89 7.14 -89.70 -0.64 15.25 16 28 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 3.86 6.18 -2.39 -0.01 3.85 16 31 H 0.06 2.31 5.93 -2.39 -0.01 2.30 16 32 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -53.38 243.07 2.19 -51.20 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.33 Total: 33.89 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 2.53 Total: -28.43 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -0.52 Total: -83.23 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.53 Total: -17.84 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -53.38 2.19 -51.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258026.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.464 kcal (2) G-P(sol) polarization free energy of solvation -53.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds