Wall clock time and date at job start Mon Mar 30 2020 01:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48497 * 109.47310 * 90.00127 * 3 2 1 5 5 H 1.48505 * 109.46733 * 209.99981 * 3 2 1 6 6 H 1.48497 * 109.47209 * 329.99697 * 3 2 1 7 7 C 1.37870 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00008 * 215.80658 * 7 2 1 9 9 C 1.50698 * 120.00070 * 35.80340 * 7 2 1 10 10 F 1.39901 * 109.36671 * 358.45767 * 9 7 2 11 11 C 1.53147 * 109.36881 * 118.20794 * 9 7 2 12 12 C 1.54008 * 108.50482 * 66.19258 * 11 9 7 13 13 H 1.09004 * 113.03567 * 188.79432 * 12 11 9 14 14 C 1.54993 * 107.05737 * 314.11849 * 12 11 9 15 15 C 1.54060 * 104.76162 * 87.42024 * 14 12 11 16 16 N 1.48238 * 106.70223 * 358.99329 * 15 14 12 17 17 C 1.48809 * 105.17396 * 27.47674 * 16 15 14 18 18 C 1.47674 * 108.90889 * 271.83239 * 16 15 14 19 19 H 0.96993 * 120.00007 * 174.25906 * 1 2 3 20 20 H 1.08999 * 109.63502 * 185.89577 * 11 9 7 21 21 H 1.08997 * 109.63264 * 306.48643 * 11 9 7 22 22 H 1.08996 * 110.38708 * 206.24556 * 14 12 11 23 23 H 1.09009 * 110.37674 * 328.60610 * 14 12 11 24 24 H 1.09007 * 110.00840 * 118.30004 * 15 14 12 25 25 H 1.09001 * 110.01398 * 239.63133 * 15 14 12 26 26 H 1.08993 * 110.93393 * 199.10492 * 17 16 15 27 27 H 1.09002 * 110.92780 * 75.43864 * 17 16 15 28 28 H 1.09004 * 109.49999 * 287.13695 * 18 16 15 29 29 H 1.08999 * 109.50408 * 167.02708 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 2.9315 -1.2821 0.5478 9 6 1.4646 -2.3761 -0.7624 10 9 0.2458 -2.0286 -1.3547 11 6 2.4633 -2.7762 -1.8524 12 6 3.7444 -3.2965 -1.1744 13 1 4.5624 -3.4595 -1.8762 14 6 4.0993 -2.2965 -0.0447 15 6 3.3100 -2.7932 1.1815 16 7 2.5446 -3.9841 0.7417 17 6 3.3362 -4.5647 -0.3766 18 6 1.2428 -3.5435 0.2013 19 1 -0.4850 -0.8358 -0.0840 20 1 2.0326 -3.5618 -2.4732 21 1 2.7011 -1.9084 -2.4676 22 1 5.1699 -2.3178 0.1588 23 1 3.7837 -1.2891 -0.3166 24 1 3.9976 -3.0664 1.9820 25 1 2.6273 -2.0162 1.5255 26 1 2.7216 -5.2271 -0.9860 27 1 4.2154 -5.0880 -0.0006 28 1 0.5989 -3.2223 1.0200 29 1 0.7712 -4.3698 -0.3306 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:10 Heat of formation + Delta-G solvation = 45.115718 kcal Electronic energy + Delta-G solvation = -14134.417127 eV Core-core repulsion = 11782.419218 eV Total energy + Delta-G solvation = -2351.997909 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -46.19985 -40.22148 -32.82541 -31.22456 -30.32587 -29.28534 -24.08210 -23.65877 -21.12615 -19.72718 -18.99751 -18.04416 -15.82296 -14.43467 -13.98335 -13.85338 -13.56436 -13.23050 -13.14136 -12.82996 -11.87614 -11.44558 -11.13388 -10.88321 -10.79945 -10.53472 -10.31090 -10.21689 -10.18534 -9.90198 -9.47928 -9.17488 -8.69775 -7.69590 -7.53140 -6.28659 -4.02286 3.36660 3.44186 3.57637 4.44739 4.82469 5.11962 5.30702 5.52149 5.66117 5.99571 6.02457 6.07651 6.15393 6.20663 6.22041 6.42366 6.57085 6.57481 6.76215 6.78866 7.08586 7.11416 7.22762 7.39865 7.65564 7.72952 8.01938 8.43075 8.76841 9.57076 10.86959 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.041696 B = 0.018168 C = 0.015612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.362174 B = 1540.793908 C = 1793.050640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.048 3.952 3 Si 1.046 2.954 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.743 4.743 8 H 0.155 0.845 9 C 0.208 3.792 10 F -0.225 7.225 11 C -0.125 4.125 12 C -0.112 4.112 13 H 0.074 0.926 14 C -0.178 4.178 15 C 0.001 3.999 16 N -0.490 5.490 17 C 0.027 3.973 18 C 0.024 3.976 19 H 0.291 0.709 20 H 0.037 0.963 21 H 0.062 0.938 22 H 0.032 0.968 23 H 0.147 0.853 24 H 0.044 0.956 25 H 0.141 0.859 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -4.271 -0.896 7.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.874 3.126 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.776 4.776 8 H 0.171 0.829 9 C 0.189 3.811 10 F -0.206 7.206 11 C -0.164 4.164 12 C -0.132 4.132 13 H 0.092 0.908 14 C -0.215 4.215 15 C -0.126 4.126 16 N -0.211 5.211 17 C -0.102 4.102 18 C -0.106 4.106 19 H 0.106 0.894 20 H 0.056 0.944 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.164 0.836 24 H 0.063 0.937 25 H 0.158 0.842 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.819 -3.063 -0.342 6.585 hybrid contribution 0.197 -1.184 -1.012 1.570 sum 6.016 -4.247 -1.354 7.487 Atomic orbital electron populations 1.70588 1.08219 1.34687 1.36061 1.25723 0.95677 1.02368 0.92824 0.83944 0.75756 0.75914 0.76991 1.21386 1.20943 1.21052 1.24237 1.16852 0.96174 1.40311 0.82899 1.19294 0.77645 0.94715 0.89494 1.92576 1.48268 1.93843 1.85894 1.22388 0.96351 0.99367 0.98261 1.22828 0.97006 0.95712 0.97611 0.90751 1.24239 0.97059 1.05367 0.94850 1.24177 0.97665 0.94303 0.96465 1.66331 1.02903 1.23745 1.28098 1.23539 0.97599 0.96413 0.92655 1.23161 0.92093 0.96523 0.98793 0.89436 0.94423 0.91884 0.94928 0.83568 0.93735 0.84199 0.91645 0.91218 0.90797 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.34 13.19 55.43 0.73 -24.60 15 2 C 0.05 1.30 5.11 -17.82 -0.09 1.21 15 3 Si 1.05 23.59 30.03 -169.99 -5.10 18.49 15 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.74 -18.71 4.21 -34.44 -0.14 -18.86 15 8 H 0.15 3.60 1.98 -113.71 -0.23 3.38 15 9 C 0.21 5.06 1.32 -91.70 -0.12 4.94 15 10 F -0.22 -6.13 13.50 2.25 0.03 -6.10 15 11 C -0.13 -2.69 4.99 -26.13 -0.13 -2.82 15 12 C -0.11 -2.10 4.35 -87.83 -0.38 -2.48 15 13 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 14 C -0.18 -3.49 5.57 -25.13 -0.14 -3.63 15 15 C 0.00 0.02 5.91 -2.53 -0.01 0.01 15 16 N -0.49 -10.07 6.07 -251.70 -1.53 -11.60 15 17 C 0.03 0.49 6.41 -1.55 -0.01 0.48 15 18 C 0.02 0.54 5.35 -3.40 -0.02 0.52 15 19 H 0.29 8.70 6.25 -40.82 -0.26 8.44 15 20 H 0.04 0.76 8.07 -51.93 -0.42 0.34 15 21 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.15 3.20 4.67 -52.02 -0.24 2.96 15 24 H 0.04 0.83 8.14 -51.92 -0.42 0.41 15 25 H 0.14 3.21 4.78 -51.93 -0.25 2.97 15 26 H 0.07 1.14 7.70 -51.93 -0.40 0.74 15 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.07 1.77 8.14 -51.93 -0.42 1.35 15 29 H 0.05 0.98 7.87 -51.93 -0.41 0.57 15 LS Contribution 217.46 15.07 3.28 3.28 Total: -1.00 -27.85 217.46 -7.17 -35.02 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -3.53 Total: 6.15 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -1.05 Total: -20.63 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.80 Total: -36.20 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.03 Total: -6.10 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.10 Total: 18.49 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -27.85 -7.17 -35.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.136 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds