Wall clock time and date at job start Mon Mar 30 2020 02:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.63458 * 55.39578 * 10 9 7 12 12 C 1.54270 * 109.63617 * 294.99999 * 10 9 7 13 13 C 1.45985 * 111.73469 * 162.26895 * 12 10 9 14 14 O 1.44229 * 112.10053 * 60.06635 * 13 12 10 15 15 C 1.39967 * 112.36861 * 277.40411 * 14 13 12 16 16 C 1.54349 * 112.56237 * 97.12269 * 15 14 13 17 17 C 1.50287 * 109.63621 * 176.00161 * 10 9 7 18 18 H 1.08996 * 108.78623 * 332.67875 * 17 10 9 19 19 N 1.46907 * 108.78539 * 90.88818 * 17 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.08996 * 109.02850 * 282.85507 * 12 10 9 24 24 H 1.09002 * 109.02943 * 41.76368 * 12 10 9 25 25 H 1.09002 * 108.95619 * 180.74004 * 13 12 10 26 26 H 1.09000 * 108.95655 * 299.47939 * 13 12 10 27 27 H 1.09001 * 108.86552 * 217.92088 * 15 14 13 28 28 H 1.09000 * 108.85772 * 336.33389 * 15 14 13 29 29 H 1.09009 * 109.08255 * 79.82600 * 16 15 14 30 30 H 1.09007 * 109.08004 * 198.86915 * 16 15 14 31 31 H 1.00897 * 110.99761 * 179.97438 * 19 17 10 32 32 H 1.00899 * 110.99378 * 303.95791 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9263 -3.5617 0.8456 12 6 3.0487 -3.6572 -1.3163 13 6 4.2659 -4.4561 -1.2099 14 8 3.9839 -5.8355 -0.8969 15 6 3.7843 -6.0408 0.4732 16 6 2.2897 -6.0544 0.8584 17 6 1.4999 -4.9635 0.0992 18 1 0.5563 -4.7894 0.6162 19 7 1.2104 -5.4469 -1.2575 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.4262 -4.0624 -2.1140 24 1 3.3192 -2.6307 -1.5637 25 1 4.8032 -4.4107 -2.1571 26 1 4.8963 -4.0381 -0.4251 27 1 4.2297 -6.9949 0.7552 28 1 4.2833 -5.2443 1.0252 29 1 1.8688 -7.0310 0.6188 30 1 2.1964 -5.8797 1.9304 31 1 0.7093 -6.3223 -1.2301 32 1 0.7016 -4.7549 -1.7869 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261266252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:14 Heat of formation + Delta-G solvation = -53.000036 kcal Electronic energy + Delta-G solvation = -13581.365904 eV Core-core repulsion = 11348.573681 eV Total energy + Delta-G solvation = -2232.792223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26626 -35.69239 -33.23321 -32.00600 -29.94571 -28.46747 -25.34635 -24.07917 -21.76127 -20.69400 -18.31641 -16.74336 -15.90878 -15.64224 -14.77216 -14.52401 -14.41605 -14.20571 -12.90627 -12.53330 -12.31082 -12.06580 -11.87478 -11.27199 -11.10447 -10.91209 -10.64451 -10.38974 -10.09292 -9.94892 -9.51555 -9.25929 -9.00048 -8.84111 -8.35306 -7.89083 -6.00794 -4.02114 3.30772 3.37367 3.40297 4.44291 4.45678 5.08764 5.25857 5.35028 5.41523 5.59509 5.63553 5.86467 5.94695 6.03878 6.08081 6.21340 6.33053 6.41495 6.64850 6.80174 6.94939 7.17062 7.27942 7.63422 7.74020 7.81544 7.88733 7.98321 8.04996 8.43013 9.03930 9.61508 11.10556 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050398 B = 0.009875 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.446057 B = 2834.840662 C = 3082.537811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.076 4.076 11 H 0.055 0.945 12 C -0.141 4.141 13 C 0.073 3.927 14 O -0.359 6.359 15 C 0.071 3.929 16 C -0.140 4.140 17 C 0.100 3.900 18 H 0.026 0.974 19 N -0.829 5.829 20 H 0.260 0.740 21 H 0.012 0.988 22 H 0.014 0.986 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.322 0.678 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.824 -9.474 -0.092 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.095 4.095 11 H 0.073 0.927 12 C -0.179 4.179 13 C -0.002 4.002 14 O -0.277 6.277 15 C -0.007 4.007 16 C -0.178 4.178 17 C -0.011 4.011 18 H 0.044 0.956 19 N -0.359 5.359 20 H 0.069 0.931 21 H 0.030 0.970 22 H 0.033 0.967 23 H 0.103 0.897 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.457 -9.521 -0.312 10.978 hybrid contribution -0.724 1.325 0.605 1.627 sum 4.733 -8.195 0.293 9.468 Atomic orbital electron populations 1.69961 1.06050 1.26509 1.51087 1.25022 0.94814 0.99192 0.95474 0.86634 0.79864 0.83660 0.78092 1.20683 1.21315 1.19918 1.21220 0.92959 0.90882 1.50089 0.92606 1.19178 0.93542 0.91340 0.96758 1.20997 0.98047 0.93637 0.96814 0.92695 1.21035 0.97099 0.99942 0.99831 1.21491 0.97045 0.82007 0.99705 1.87742 1.90963 1.26250 1.22790 1.22065 0.94700 0.99902 0.84062 1.22713 0.97108 0.98910 0.99092 1.21177 0.96827 0.94471 0.88622 0.95634 1.59100 1.54096 1.07321 1.15419 0.93083 0.96985 0.96739 0.89721 0.90717 0.90917 0.94505 0.91808 0.93849 0.92321 0.91858 0.86651 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.20 8.15 -34.44 -0.28 -14.48 16 8 H 0.06 1.51 7.23 -52.49 -0.38 1.13 16 9 C 0.03 0.73 4.28 -27.88 -0.12 0.61 16 10 C -0.08 -1.56 1.68 -91.31 -0.15 -1.71 16 11 H 0.05 1.15 7.10 -51.93 -0.37 0.79 16 12 C -0.14 -2.71 4.63 -29.39 -0.14 -2.85 16 13 C 0.07 1.24 6.12 33.83 0.21 1.45 16 14 O -0.36 -6.17 9.78 -32.84 -0.32 -6.49 16 15 C 0.07 1.07 6.09 37.86 0.23 1.30 16 16 C -0.14 -2.12 5.88 -25.18 -0.15 -2.27 16 17 C 0.10 1.78 2.92 -68.22 -0.20 1.58 16 18 H 0.03 0.49 7.63 -51.93 -0.40 0.09 16 19 N -0.83 -13.50 6.64 -5.10 -0.03 -13.53 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 21 H 0.01 0.33 7.99 -51.93 -0.41 -0.09 16 22 H 0.01 0.38 8.05 -51.93 -0.42 -0.03 16 23 H 0.08 1.63 5.71 -51.93 -0.30 1.34 16 24 H 0.07 1.56 6.65 -51.93 -0.35 1.22 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.60 7.34 -51.93 -0.38 0.22 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.65 6.54 -51.93 -0.34 0.31 16 29 H 0.06 0.82 7.95 -51.92 -0.41 0.41 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.32 4.56 8.85 -39.29 -0.35 4.21 16 32 H 0.34 5.71 8.08 -39.29 -0.32 5.40 16 LS Contribution 247.61 15.07 3.73 3.73 Total: -1.00 -29.62 247.61 -6.42 -36.04 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.82 Total: 4.61 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.70 Total: -14.88 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.70 Total: -39.56 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.32 Total: -6.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.62 -6.42 -36.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.955 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds