Wall clock time and date at job start Mon Mar 30 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.63458 * 55.39578 * 10 9 7 12 12 C 1.54270 * 109.63617 * 294.99999 * 10 9 7 13 13 C 1.45985 * 111.73469 * 162.26895 * 12 10 9 14 14 O 1.44229 * 112.10053 * 60.06635 * 13 12 10 15 15 C 1.39967 * 112.36861 * 277.40411 * 14 13 12 16 16 C 1.54349 * 112.56237 * 97.12269 * 15 14 13 17 17 C 1.50287 * 109.63621 * 176.00161 * 10 9 7 18 18 H 1.08996 * 108.78623 * 332.67875 * 17 10 9 19 19 N 1.46907 * 108.78539 * 90.88818 * 17 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.08996 * 109.02850 * 282.85507 * 12 10 9 24 24 H 1.09002 * 109.02943 * 41.76368 * 12 10 9 25 25 H 1.09002 * 108.95619 * 180.74004 * 13 12 10 26 26 H 1.09000 * 108.95655 * 299.47939 * 13 12 10 27 27 H 1.09001 * 108.86552 * 217.92088 * 15 14 13 28 28 H 1.09000 * 108.85772 * 336.33389 * 15 14 13 29 29 H 1.09009 * 109.08255 * 79.82600 * 16 15 14 30 30 H 1.09007 * 109.08004 * 198.86915 * 16 15 14 31 31 H 1.00897 * 110.99761 * 179.97438 * 19 17 10 32 32 H 1.00899 * 110.99378 * 303.95791 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9263 -3.5617 0.8456 12 6 3.0487 -3.6572 -1.3163 13 6 4.2659 -4.4561 -1.2099 14 8 3.9839 -5.8355 -0.8969 15 6 3.7843 -6.0408 0.4732 16 6 2.2897 -6.0544 0.8584 17 6 1.4999 -4.9635 0.0992 18 1 0.5563 -4.7894 0.6162 19 7 1.2104 -5.4469 -1.2575 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.4262 -4.0624 -2.1140 24 1 3.3192 -2.6307 -1.5637 25 1 4.8032 -4.4107 -2.1571 26 1 4.8963 -4.0381 -0.4251 27 1 4.2297 -6.9949 0.7552 28 1 4.2833 -5.2443 1.0252 29 1 1.8688 -7.0310 0.6188 30 1 2.1964 -5.8797 1.9304 31 1 0.7093 -6.3223 -1.2301 32 1 0.7016 -4.7549 -1.7869 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:13 Heat of formation + Delta-G solvation = -73.591955 kcal Electronic energy + Delta-G solvation = -13582.258837 eV Core-core repulsion = 11348.573681 eV Total energy + Delta-G solvation = -2233.685155 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67647 -37.17358 -35.10541 -33.66423 -31.42760 -30.13098 -27.14547 -25.49644 -23.59052 -22.10816 -19.85844 -18.61395 -17.53609 -17.13049 -16.36348 -16.08649 -15.85488 -15.64668 -14.48024 -14.21316 -13.90493 -13.76615 -13.55885 -12.90816 -12.77873 -12.64070 -12.30373 -12.18197 -11.70360 -11.37864 -11.15161 -11.02747 -10.88849 -10.53561 -10.27174 -9.26829 -8.19072 -6.28117 1.39448 1.40008 1.50842 2.40773 3.13943 3.20415 3.73578 3.93571 4.07297 4.22255 4.37522 4.46949 4.51554 4.69745 4.76616 4.88486 4.99315 5.03976 5.19771 5.22795 5.37396 5.44511 5.48031 5.57560 5.82675 5.90408 6.26378 6.37243 6.58585 6.76611 6.87567 7.40235 8.92735 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050398 B = 0.009875 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.446057 B = 2834.840662 C = 3082.537811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.037 3.963 10 C -0.067 4.067 11 H 0.050 0.950 12 C -0.132 4.132 13 C 0.075 3.925 14 O -0.367 6.367 15 C 0.064 3.936 16 C -0.135 4.135 17 C 0.101 3.899 18 H 0.007 0.993 19 N -0.825 5.825 20 H 0.261 0.739 21 H -0.020 1.020 22 H -0.009 1.009 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.337 0.663 32 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -10.147 -0.080 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.000 4.000 10 C -0.086 4.086 11 H 0.069 0.931 12 C -0.170 4.170 13 C -0.001 4.001 14 O -0.285 6.285 15 C -0.014 4.014 16 C -0.173 4.173 17 C -0.011 4.011 18 H 0.025 0.975 19 N -0.356 5.356 20 H 0.070 0.930 21 H -0.001 1.001 22 H 0.009 0.991 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.028 -10.220 -0.300 12.406 hybrid contribution -1.263 1.504 0.607 2.056 sum 5.764 -8.715 0.308 10.454 Atomic orbital electron populations 1.70098 1.07767 1.27530 1.52182 1.25939 0.95683 1.03179 0.95076 0.85523 0.78739 0.78831 0.78441 1.19845 1.21057 1.18729 1.21609 0.93383 0.91974 1.49543 0.92116 1.19041 0.93830 0.93112 0.94024 1.20815 0.97046 0.93207 0.97539 0.93147 1.20944 0.98089 0.99273 0.98706 1.21439 0.95731 0.81842 1.01057 1.87735 1.90992 1.25827 1.23975 1.22260 0.94532 1.01419 0.83180 1.22692 0.97007 0.98397 0.99252 1.21074 0.96143 0.94278 0.89563 0.97508 1.59069 1.54318 1.07813 1.14361 0.92985 1.00137 0.99078 0.89960 0.92849 0.89071 0.93805 0.89004 0.93873 0.90637 0.90826 0.84980 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 3 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.53 -29.57 8.15 25.60 0.21 -29.36 16 8 H 0.06 3.27 7.23 -2.91 -0.02 3.25 16 9 C 0.04 1.94 4.28 29.85 0.13 2.06 16 10 C -0.07 -2.76 1.68 -11.24 -0.02 -2.78 16 11 H 0.05 2.10 7.10 -2.38 -0.02 2.08 16 12 C -0.13 -5.00 4.63 28.87 0.13 -4.86 16 13 C 0.08 2.39 6.12 69.83 0.43 2.81 16 14 O -0.37 -11.56 9.78 -140.42 -1.37 -12.93 16 15 C 0.06 1.74 6.09 72.44 0.44 2.18 16 16 C -0.14 -3.78 5.88 31.60 0.19 -3.60 16 17 C 0.10 3.52 2.92 44.58 0.13 3.65 16 18 H 0.01 0.27 7.63 -2.39 -0.02 0.25 16 19 N -0.82 -26.06 6.64 -170.05 -1.13 -27.19 16 20 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 21 H -0.02 -1.14 7.99 -2.39 -0.02 -1.16 16 22 H -0.01 -0.52 8.05 -2.39 -0.02 -0.53 16 23 H 0.08 3.13 5.71 -2.39 -0.01 3.12 16 24 H 0.05 2.23 6.65 -2.39 -0.02 2.21 16 25 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.04 1.33 7.34 -2.39 -0.02 1.31 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.04 1.18 6.54 -2.39 -0.02 1.17 16 29 H 0.07 1.87 7.95 -2.38 -0.02 1.85 16 30 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.34 8.99 8.85 -89.70 -0.79 8.20 16 32 H 0.33 11.26 8.08 -89.69 -0.72 10.54 16 Total: -1.00 -63.14 247.61 1.50 -61.64 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -0.40 Total: 18.41 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 2.10 Total: -29.51 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -0.84 Total: -83.90 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.37 Total: -12.93 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -63.14 1.50 -61.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.956 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds