Wall clock time and date at job start Mon Mar 30 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 O 1.42898 * 109.47228 * 60.00083 * 9 7 2 12 12 N 1.46297 * 114.00118 * 205.00024 * 11 9 7 13 13 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 14 14 C 1.53004 * 109.47053 * 300.00128 * 13 9 7 15 15 C 1.52996 * 109.47169 * 179.97438 * 14 13 9 16 16 C 1.53005 * 109.46949 * 60.00048 * 15 14 13 17 17 C 1.52998 * 109.47019 * 299.99672 * 16 15 14 18 18 C 1.52992 * 109.47319 * 180.02562 * 13 9 7 19 19 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 20 20 H 1.00902 * 110.99822 * 56.04163 * 12 11 9 21 21 H 1.00897 * 111.00608 * 179.97438 * 12 11 9 22 22 H 1.08998 * 109.46846 * 59.99549 * 13 9 7 23 23 H 1.08998 * 109.46853 * 299.99992 * 14 13 9 24 24 H 1.09005 * 109.47449 * 59.99539 * 14 13 9 25 25 H 1.08998 * 109.47408 * 299.99874 * 15 14 13 26 26 H 1.08994 * 109.47190 * 179.97438 * 15 14 13 27 27 H 1.09004 * 109.46963 * 180.02562 * 16 15 14 28 28 H 1.08998 * 109.47208 * 59.99704 * 16 15 14 29 29 H 1.08998 * 109.47126 * 300.00619 * 17 16 15 30 30 H 1.08996 * 109.47462 * 180.02562 * 17 16 15 31 31 H 1.09009 * 109.47216 * 299.99697 * 18 13 9 32 32 H 1.08998 * 109.47141 * 59.99668 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5751 -1.1665 12 7 -0.7319 -3.4520 -1.0206 13 6 2.2454 -3.6620 0.0018 14 6 3.1260 -3.5815 -1.2468 15 6 4.1207 -4.7440 -1.2452 16 6 3.3561 -6.0693 -1.2449 17 6 2.4756 -6.1499 0.0037 18 6 1.4805 -4.9870 0.0012 19 1 -0.4850 -0.8401 -0.0004 20 1 -1.2974 -3.1747 -0.2323 21 1 -1.2788 -3.4720 -1.8683 22 1 2.8714 -3.6038 0.8922 23 1 2.5000 -3.6396 -2.1372 24 1 3.6710 -2.6374 -1.2469 25 1 4.7466 -4.6854 -0.3548 26 1 4.7477 -4.6869 -2.1349 27 1 4.0648 -6.8976 -1.2433 28 1 2.7302 -6.1279 -2.1353 29 1 3.1016 -6.0912 0.8941 30 1 1.9313 -7.0942 0.0042 31 1 0.8528 -5.0447 0.8906 32 1 0.8548 -5.0449 -0.8894 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270531.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:53 Heat of formation + Delta-G solvation = -55.947329 kcal Electronic energy + Delta-G solvation = -13658.275050 eV Core-core repulsion = 11425.355023 eV Total energy + Delta-G solvation = -2232.920027 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83254 -37.16955 -34.66133 -32.48809 -31.50312 -29.97859 -27.64113 -24.83448 -23.26135 -21.95153 -20.37718 -19.06430 -17.14032 -16.99984 -16.09503 -15.67717 -15.52698 -15.08769 -14.81922 -14.55655 -13.77670 -13.34344 -12.97166 -12.80554 -12.66448 -12.62426 -11.95341 -11.92020 -11.80592 -11.68206 -11.26888 -11.16319 -10.77524 -10.48568 -10.41839 -9.40188 -8.66342 -6.45401 1.51654 1.58858 1.78568 2.30894 2.56393 3.23923 3.94962 3.99007 4.04167 4.44896 4.45433 4.61290 4.71187 4.75146 4.77110 4.80480 4.89787 5.04657 5.18264 5.21121 5.36628 5.44037 5.48425 5.50948 5.64670 5.82126 6.04134 6.14486 6.18120 6.53909 6.68421 7.42659 8.71608 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042143 B = 0.011840 C = 0.009979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.240841 B = 2364.235165 C = 2805.105980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.114 2.886 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.609 4.609 8 H 0.059 0.941 9 C 0.208 3.792 10 H -0.020 1.020 11 O -0.256 6.256 12 N -0.680 5.680 13 C -0.087 4.087 14 C -0.090 4.090 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.104 4.104 19 H 0.263 0.737 20 H 0.328 0.672 21 H 0.356 0.644 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -9.192 -1.230 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.223 4.223 3 Si 0.935 3.065 4 H -0.209 1.209 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.647 4.647 8 H 0.078 0.922 9 C 0.151 3.849 10 H -0.003 1.003 11 O -0.270 6.270 12 N -0.245 5.245 13 C -0.106 4.106 14 C -0.128 4.128 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.141 4.141 19 H 0.073 0.927 20 H 0.137 0.863 21 H 0.168 0.832 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.749 -8.091 -1.309 9.473 hybrid contribution -0.930 -0.645 0.117 1.138 sum 3.818 -8.736 -1.192 9.609 Atomic orbital electron populations 1.70845 1.07940 1.30598 1.46323 1.27353 0.96652 1.06567 0.91684 0.82983 0.74236 0.71243 0.77992 1.20935 1.19113 1.19821 1.22432 0.94559 0.92153 1.55601 0.92246 1.19770 0.87708 0.93905 0.83484 1.00262 1.90888 1.32236 1.65557 1.38348 1.64415 1.07604 1.43077 1.09396 1.21376 0.96678 0.95195 0.97312 1.21249 0.96838 0.97605 0.97108 1.21560 0.97381 0.94631 1.01647 1.21486 0.98513 0.96983 0.97866 1.21553 0.97560 0.97857 0.98214 1.21533 0.97434 0.93467 1.01699 0.92728 0.86261 0.83169 0.93644 0.94059 0.94192 0.92240 0.91429 0.90282 0.92646 0.92489 0.91031 0.94438 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.12 13.53 21.45 0.29 -55.82 16 2 C -0.02 -1.24 5.40 84.65 0.46 -0.78 16 3 Si 1.11 50.27 29.90 68.60 2.05 52.32 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.61 -34.66 8.07 25.60 0.21 -34.46 16 8 H 0.06 3.32 6.71 -2.91 -0.02 3.30 16 9 C 0.21 10.83 1.70 29.85 0.05 10.88 16 10 H -0.02 -1.14 7.83 -2.39 -0.02 -1.15 16 11 O -0.26 -13.12 9.38 -50.15 -0.47 -13.59 16 12 N -0.68 -27.20 8.54 37.02 0.32 -26.89 16 13 C -0.09 -3.77 2.04 -10.79 -0.02 -3.79 16 14 C -0.09 -3.69 4.80 30.59 0.15 -3.54 16 15 C -0.11 -3.56 5.92 30.59 0.18 -3.38 16 16 C -0.11 -3.02 5.92 30.60 0.18 -2.84 16 17 C -0.11 -3.32 5.93 30.61 0.18 -3.14 16 18 C -0.10 -3.83 4.52 30.61 0.14 -3.70 16 19 H 0.26 15.95 6.47 -92.70 -0.60 15.35 16 20 H 0.33 12.84 9.06 -89.69 -0.81 12.03 16 21 H 0.36 12.29 9.25 -89.70 -0.83 11.46 16 22 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.80 7.68 -2.39 -0.02 1.78 16 24 H 0.04 1.78 6.62 -2.38 -0.02 1.76 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.07 2.91 6.35 -2.39 -0.02 2.89 16 Total: -1.00 -64.42 252.10 3.34 -61.08 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.36 Total: 27.64 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 1.52 Total: -44.73 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: 0.61 Total: -82.71 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.47 Total: -13.59 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.05 Total: 52.32 kcal Total: -64.42 3.34 -61.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270531.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.131 kcal (2) G-P(sol) polarization free energy of solvation -64.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds