Wall clock time and date at job start Mon Mar 30 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48500 * 109.46868 * 269.99951 * 3 2 1 5 5 H 1.48502 * 109.47160 * 29.99603 * 3 2 1 6 6 H 1.48496 * 109.47472 * 150.00150 * 3 2 1 7 7 C 1.37874 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00546 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00198 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46812 * 59.99540 * 9 7 2 11 11 O 1.42905 * 109.46650 * 300.00043 * 9 7 2 12 12 N 1.46306 * 113.99808 * 85.00101 * 11 9 7 13 13 C 1.52997 * 109.47376 * 179.97438 * 9 7 2 14 14 C 1.52996 * 109.46975 * 184.99777 * 13 9 7 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 13 9 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 13 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 H 0.96995 * 120.00028 * 359.97438 * 1 2 3 20 20 H 1.00893 * 111.00465 * 56.04274 * 12 11 9 21 21 H 1.00901 * 110.99384 * 179.97438 * 12 11 9 22 22 H 1.08992 * 109.47280 * 305.00312 * 13 9 7 23 23 H 1.09004 * 109.47368 * 60.00217 * 14 13 9 24 24 H 1.09001 * 109.47372 * 300.00372 * 14 13 9 25 25 H 1.09002 * 109.47398 * 180.02562 * 15 14 13 26 26 H 1.09001 * 109.47194 * 300.00476 * 15 14 13 27 27 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 28 28 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 29 29 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 30 30 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.47045 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 0.4291 -2.5746 1.1671 12 7 -0.8735 -1.9248 1.0201 13 6 2.2453 -3.6621 0.0005 14 6 1.4845 -4.9835 -0.1251 15 6 2.4786 -6.1465 -0.1245 16 6 3.2729 -6.1377 1.1831 17 6 4.0337 -4.8162 1.3089 18 6 3.0395 -3.6533 1.3082 19 1 -0.4850 0.8400 0.0004 20 1 -1.3783 -2.3007 0.2316 21 1 -1.4153 -2.0053 1.8676 22 1 2.9294 -3.5552 -0.8412 23 1 0.9182 -4.9896 -1.0565 24 1 0.8003 -5.0904 0.7167 25 1 1.9366 -7.0879 -0.2145 26 1 3.1631 -6.0399 -0.9660 27 1 2.5885 -6.2444 2.0247 28 1 3.9815 -6.9659 1.1835 29 1 4.7182 -4.7096 0.4673 30 1 4.5992 -4.8098 2.2407 31 1 3.5816 -2.7118 1.3974 32 1 2.3550 -3.7600 2.1498 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270532.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:55 Heat of formation + Delta-G solvation = -9.611171 kcal Electronic energy + Delta-G solvation = -13599.019252 eV Core-core repulsion = 11368.108511 eV Total energy + Delta-G solvation = -2230.910740 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.11226 -35.02680 -31.97221 -30.93161 -30.13678 -27.65695 -25.84941 -22.91238 -21.87983 -20.08942 -18.76390 -16.34573 -15.09215 -14.89638 -14.26272 -14.04691 -13.57031 -13.48153 -13.07569 -12.53405 -12.05878 -11.62468 -11.56107 -11.04779 -10.72407 -10.62832 -10.57000 -10.48330 -10.07492 -9.95915 -9.60167 -9.40582 -8.92518 -8.48658 -8.19409 -6.72893 -5.54257 -3.78295 3.42592 3.49204 3.53093 4.61474 4.69794 5.23889 5.32493 5.35167 5.60612 5.83898 5.93778 6.07544 6.09489 6.13696 6.20078 6.27555 6.45389 6.60481 6.66391 6.81244 6.86189 6.92174 7.17799 7.30526 7.47008 7.57439 8.12810 8.47474 8.52583 9.09309 9.15346 9.84988 11.31597 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043880 B = 0.011516 C = 0.009950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.952772 B = 2430.848874 C = 2813.321917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.553 4.553 8 H 0.052 0.948 9 C 0.223 3.777 10 H 0.011 0.989 11 O -0.264 6.264 12 N -0.604 5.604 13 C -0.073 4.073 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.098 4.098 19 H 0.249 0.751 20 H 0.307 0.693 21 H 0.309 0.691 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -8.903 0.710 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.591 4.591 8 H 0.070 0.930 9 C 0.167 3.833 10 H 0.028 0.972 11 O -0.278 6.278 12 N -0.165 5.165 13 C -0.093 4.093 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.136 4.136 19 H 0.060 0.940 20 H 0.116 0.884 21 H 0.119 0.881 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.521 -8.215 0.784 8.629 hybrid contribution -0.075 0.118 -0.013 0.140 sum 2.446 -8.097 0.771 8.494 Atomic orbital electron populations 1.70292 1.04816 1.24393 1.44816 1.25042 0.94762 0.98337 0.94958 0.86906 0.80205 0.84895 0.77598 1.21147 1.21539 1.20269 1.21337 0.92717 0.91117 1.53969 0.92987 1.19485 0.87366 0.91500 0.84958 0.97178 1.90414 1.20609 1.77998 1.38827 1.65405 0.95649 1.50939 1.04544 1.21261 0.97080 0.93566 0.97364 1.21605 0.97653 0.94916 1.00968 1.21531 0.98268 0.98121 0.97523 1.21504 0.98620 0.97264 0.97929 1.21627 0.98282 0.95488 1.00537 1.21376 0.97052 0.97006 0.98154 0.94035 0.88368 0.88128 0.91707 0.93136 0.92264 0.93164 0.92545 0.92434 0.93214 0.92717 0.93064 0.91351 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.11 10.05 55.43 0.56 -22.55 16 2 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 3 Si 0.88 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.55 -15.63 8.09 -34.44 -0.28 -15.91 16 8 H 0.05 1.46 7.05 -52.49 -0.37 1.09 16 9 C 0.22 5.70 2.15 -27.88 -0.06 5.64 16 10 H 0.01 0.29 7.97 -51.93 -0.41 -0.12 16 11 O -0.26 -6.78 10.18 -13.93 -0.14 -6.93 16 12 N -0.60 -14.44 7.47 60.35 0.45 -13.98 16 13 C -0.07 -1.53 1.98 -90.62 -0.18 -1.71 16 14 C -0.11 -2.05 5.10 -26.73 -0.14 -2.19 16 15 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 16 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 17 C -0.12 -1.95 5.92 -26.73 -0.16 -2.11 16 18 C -0.10 -1.96 4.82 -26.73 -0.13 -2.09 16 19 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 20 H 0.31 6.89 9.06 -39.30 -0.36 6.53 16 21 H 0.31 6.50 9.25 -39.29 -0.36 6.14 16 22 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 1.12 7.82 -51.93 -0.41 0.71 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.49 6.95 -51.93 -0.36 1.13 16 32 H 0.06 1.26 7.56 -51.93 -0.39 0.87 16 LS Contribution 252.96 15.07 3.81 3.81 Total: -1.00 -29.60 252.96 -6.88 -36.48 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.18 Total: 6.36 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -1.35 Total: -20.03 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 1.01 Total: -36.53 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.14 Total: -6.93 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.60 -6.88 -36.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270532.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.864 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds