Wall clock time and date at job start Mon Mar 30 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48507 * 109.47050 * 240.00476 * 3 2 1 5 5 H 1.48495 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46917 * 120.00583 * 3 2 1 7 7 C 1.37876 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00362 * 359.97438 * 7 2 1 10 10 F 1.39893 * 109.63036 * 299.61639 * 9 7 2 11 11 C 1.53155 * 109.62651 * 60.00519 * 9 7 2 12 12 C 1.52990 * 110.09185 * 65.70960 * 11 9 7 13 13 N 1.47670 * 109.28719 * 55.21291 * 12 11 9 14 14 C 1.48239 * 108.91489 * 47.08532 * 13 12 11 15 15 C 1.54063 * 106.69753 * 271.83414 * 14 13 12 16 16 C 1.54156 * 109.64228 * 179.11974 * 9 7 2 17 17 H 1.08999 * 113.21190 * 69.11930 * 16 9 7 18 18 C 1.48811 * 108.08387 * 293.32006 * 13 12 11 19 19 H 0.96994 * 119.99746 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.37117 * 305.51670 * 11 9 7 21 21 H 1.08999 * 109.26219 * 185.83300 * 11 9 7 22 22 H 1.08994 * 109.50143 * 295.26628 * 12 11 9 23 23 H 1.09008 * 109.53519 * 175.17401 * 12 11 9 24 24 H 1.09005 * 110.01289 * 152.52815 * 14 13 12 25 25 H 1.08994 * 110.05466 * 31.16667 * 14 13 12 26 26 H 1.09002 * 110.37949 * 117.80668 * 15 14 13 27 27 H 1.09002 * 110.38146 * 240.04948 * 15 14 13 28 28 H 1.08993 * 110.93219 * 191.65925 * 18 13 12 29 29 H 1.09003 * 110.93050 * 315.32911 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 9 0.4526 -2.5809 1.1452 11 6 0.3689 -2.5838 -1.2496 12 6 1.2404 -2.6480 -2.5053 13 7 2.1854 -3.7765 -2.3860 14 6 1.4442 -4.9782 -1.9343 15 6 1.4438 -4.9450 -0.3940 16 6 2.2492 -3.6737 -0.0235 17 1 2.8123 -3.7772 0.9041 18 6 3.1363 -3.4681 -1.2836 19 1 -0.4849 0.8400 0.0004 20 1 -0.2727 -1.7040 -1.2994 21 1 -0.2498 -3.4795 -1.1928 22 1 1.7971 -1.7168 -2.6099 23 1 0.6079 -2.7941 -3.3810 24 1 1.9445 -5.8798 -2.2878 25 1 0.4209 -4.9487 -2.3084 26 1 0.4239 -4.8718 -0.0163 27 1 1.9326 -5.8339 0.0050 28 1 3.9744 -4.1650 -1.2860 29 1 3.4877 -2.4384 -1.3491 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:05 Heat of formation + Delta-G solvation = -59.663158 kcal Electronic energy + Delta-G solvation = -13902.828774 eV Core-core repulsion = 11546.287312 eV Total energy + Delta-G solvation = -2356.541462 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.73085 -41.16245 -35.10650 -32.54926 -31.91101 -30.10243 -27.36194 -24.39721 -23.48072 -21.45591 -20.30657 -18.17998 -17.59459 -16.84025 -16.34786 -15.50644 -15.29474 -15.17604 -14.41283 -13.95175 -13.50864 -13.27472 -13.07425 -12.87116 -12.61075 -12.51756 -12.32171 -12.19456 -11.88560 -11.75338 -11.44837 -10.74824 -10.54513 -10.46161 -9.43864 -8.15636 -6.40648 1.40497 1.41668 1.49150 2.36823 3.09729 3.24906 3.76903 3.90338 4.18714 4.32430 4.39600 4.47551 4.57559 4.65917 4.79418 4.85471 4.98698 5.06166 5.12291 5.22763 5.24393 5.36716 5.53247 5.74055 5.89945 6.02884 6.10020 6.21245 6.64542 7.35197 8.85168 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.015090 C = 0.014089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.945367 B = 1855.071459 C = 1986.850143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.562 4.562 8 H 0.069 0.931 9 C 0.226 3.774 10 F -0.257 7.257 11 C -0.155 4.155 12 C 0.059 3.941 13 N -0.498 5.498 14 C 0.033 3.967 15 C -0.141 4.141 16 C -0.143 4.143 17 H 0.080 0.920 18 C 0.046 3.954 19 H 0.263 0.737 20 H 0.070 0.930 21 H 0.040 0.960 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -6.443 -3.871 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.087 0.913 9 C 0.208 3.792 10 F -0.238 7.238 11 C -0.195 4.195 12 C -0.070 4.070 13 N -0.219 5.219 14 C -0.096 4.096 15 C -0.180 4.180 16 C -0.164 4.164 17 H 0.099 0.901 18 C -0.083 4.083 19 H 0.072 0.928 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.117 0.883 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.967 -6.418 -4.435 8.752 hybrid contribution -0.578 1.296 1.294 1.920 sum 3.389 -5.122 -3.141 6.899 Atomic orbital electron populations 1.70050 1.07438 1.27569 1.48888 1.25804 0.95560 1.02735 0.93275 0.85627 0.78443 0.78588 0.79126 1.18717 1.21045 1.19845 1.21672 0.93614 0.90992 1.53631 0.91303 1.18997 0.86567 0.94070 0.79535 1.92651 1.77810 1.97493 1.55860 1.22520 0.99492 1.00931 0.96535 1.22243 0.94352 0.94589 0.95776 1.66414 1.13279 1.03526 1.38713 1.23104 0.98869 0.94837 0.92763 1.22898 0.99743 0.97742 0.97612 1.23644 0.97712 0.94949 1.00045 0.90136 1.23511 0.95373 1.02190 0.87209 0.92763 0.91159 0.94192 0.91903 0.90612 0.88250 0.91482 0.93300 0.89682 0.88685 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.03 10.99 21.45 0.24 -51.79 15 2 C 0.03 1.53 5.26 84.65 0.45 1.97 15 3 Si 0.96 42.74 29.54 68.60 2.03 44.76 15 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.56 -30.02 6.50 25.60 0.17 -29.85 15 8 H 0.07 3.55 6.58 -2.91 -0.02 3.53 15 9 C 0.23 11.37 0.61 -11.10 -0.01 11.37 15 10 F -0.26 -14.81 16.21 44.97 0.73 -14.08 15 11 C -0.16 -7.34 4.58 30.64 0.14 -7.20 15 12 C 0.06 2.40 5.63 86.15 0.48 2.88 15 13 N -0.50 -17.84 6.07 -878.00 -5.33 -23.17 15 14 C 0.03 1.02 6.20 86.40 0.54 1.56 15 15 C -0.14 -4.86 5.87 31.64 0.19 -4.67 15 16 C -0.14 -5.84 3.71 -8.87 -0.03 -5.88 15 17 H 0.08 3.26 8.14 -2.39 -0.02 3.24 15 18 C 0.05 1.67 6.26 86.78 0.54 2.21 15 19 H 0.26 14.48 8.31 -92.71 -0.77 13.71 15 20 H 0.07 3.81 5.95 -2.39 -0.01 3.80 15 21 H 0.04 1.79 5.36 -2.39 -0.01 1.77 15 22 H 0.06 2.78 7.34 -2.39 -0.02 2.76 15 23 H 0.08 2.75 8.14 -2.38 -0.02 2.74 15 24 H 0.10 2.54 8.14 -2.38 -0.02 2.52 15 25 H 0.07 2.09 6.94 -2.39 -0.02 2.07 15 26 H 0.05 1.86 6.77 -2.39 -0.02 1.84 15 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 28 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 29 H 0.08 3.16 5.68 -2.39 -0.01 3.15 15 Total: -1.00 -60.38 222.38 1.27 -59.11 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.14 Total: 12.77 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 2.46 Total: -27.61 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -5.09 Total: -74.96 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.73 Total: -14.08 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -60.38 1.27 -59.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.553 kcal (2) G-P(sol) polarization free energy of solvation -60.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds