Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48496 * 109.47696 * 240.00435 * 3 2 1 5 5 H 1.48500 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47172 * 120.00171 * 3 2 1 7 7 C 1.37880 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 359.97438 * 7 2 1 10 10 F 1.39905 * 109.62812 * 60.00477 * 9 7 2 11 11 C 1.53149 * 109.63080 * 299.61468 * 9 7 2 12 12 C 1.52994 * 110.09254 * 186.09882 * 11 9 7 13 13 N 1.47678 * 109.28044 * 55.21168 * 12 11 9 14 14 C 1.48236 * 108.91629 * 47.08266 * 13 12 11 15 15 C 1.54062 * 106.70067 * 271.82825 * 14 13 12 16 16 C 1.54006 * 109.79412 * 180.49969 * 9 7 2 17 17 H 1.09001 * 113.03519 * 307.66017 * 16 9 7 18 18 C 1.48810 * 108.08558 * 293.32006 * 13 12 11 19 19 H 0.97002 * 120.00115 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.36670 * 306.28934 * 11 9 7 21 21 H 1.08999 * 109.36912 * 65.91372 * 11 9 7 22 22 H 1.09000 * 109.50398 * 175.15587 * 12 11 9 23 23 H 1.08999 * 109.50401 * 295.23397 * 12 11 9 24 24 H 1.09005 * 110.01463 * 31.13524 * 14 13 12 25 25 H 1.08994 * 110.01714 * 152.51039 * 14 13 12 26 26 H 1.08995 * 110.37617 * 240.16791 * 15 14 13 27 27 H 1.09001 * 110.38162 * 117.81055 * 15 14 13 28 28 H 1.08997 * 110.93032 * 191.66852 * 18 13 12 29 29 H 1.08999 * 110.92885 * 315.29173 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 9 0.4451 -2.5765 -1.1415 11 6 0.3770 -2.5887 1.2538 12 6 -0.2756 -3.9696 1.3423 13 7 0.7727 -5.0085 1.2913 14 6 1.8606 -4.6398 2.2283 15 6 2.8419 -3.7516 1.4398 16 6 2.2452 -3.6753 0.0115 17 1 2.9943 -3.6087 -0.7776 18 6 1.3939 -4.9720 -0.0604 19 1 -0.4850 0.8400 0.0004 20 1 0.9941 -2.4232 2.1369 21 1 -0.3990 -1.8245 1.2090 22 1 -0.8253 -4.0530 2.2798 23 1 -0.9612 -4.1024 0.5054 24 1 1.4530 -4.0857 3.0738 25 1 2.3698 -5.5369 2.5804 26 1 3.8310 -4.2089 1.4141 27 1 2.8940 -2.7571 1.8830 28 1 2.0265 -5.8448 -0.2220 29 1 0.6326 -4.8962 -0.8368 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -62.052406 kcal Electronic energy + Delta-G solvation = -13850.076815 eV Core-core repulsion = 11493.431747 eV Total energy + Delta-G solvation = -2356.645068 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 199.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.76205 -41.02938 -35.16255 -32.74583 -31.96270 -29.89055 -27.58643 -24.35652 -23.50763 -21.36337 -20.07601 -18.80174 -17.53335 -16.66854 -16.24317 -15.56020 -15.31716 -15.13420 -14.62125 -13.80532 -13.70334 -13.39043 -12.88057 -12.80955 -12.73014 -12.55566 -12.22598 -12.05724 -11.94768 -11.79364 -11.60941 -10.83818 -10.67323 -10.50383 -9.41954 -8.16763 -6.43915 1.37763 1.39411 1.47213 2.34820 3.06212 3.19765 3.80361 3.91171 4.09550 4.30994 4.33553 4.43533 4.57431 4.66093 4.76264 4.83774 4.98980 5.03463 5.07879 5.18847 5.23366 5.33088 5.51790 5.76030 5.87949 5.93146 6.07788 6.19121 6.62365 7.32564 8.82633 Molecular weight = 199.11amu Principal moments of inertia in cm(-1) A = 0.051708 B = 0.014000 C = 0.013206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.374574 B = 1999.452699 C = 2119.691730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.571 4.571 8 H 0.063 0.937 9 C 0.230 3.770 10 F -0.253 7.253 11 C -0.151 4.151 12 C 0.037 3.963 13 N -0.498 5.498 14 C 0.032 3.968 15 C -0.130 4.130 16 C -0.141 4.141 17 H 0.079 0.921 18 C 0.033 3.967 19 H 0.264 0.736 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 -6.544 3.893 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.608 4.608 8 H 0.081 0.919 9 C 0.212 3.788 10 F -0.234 7.234 11 C -0.190 4.190 12 C -0.091 4.091 13 N -0.219 5.219 14 C -0.096 4.096 15 C -0.168 4.168 16 C -0.161 4.161 17 H 0.098 0.902 18 C -0.096 4.096 19 H 0.073 0.927 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.281 -7.004 4.028 8.720 hybrid contribution 0.409 2.125 -0.560 2.235 sum 3.690 -4.879 3.468 7.032 Atomic orbital electron populations 1.70071 1.07367 1.27656 1.48638 1.25845 0.95663 1.02862 0.93169 0.85591 0.78431 0.78457 0.79062 1.19789 1.20789 1.18899 1.21701 0.93523 0.91463 1.54155 0.91908 1.18894 0.86359 0.93774 0.79735 1.92646 1.77208 1.97429 1.56103 1.22509 1.00576 0.97590 0.98372 1.22552 0.94900 0.89975 1.01716 1.66467 1.09368 1.41190 1.04887 1.23128 0.91693 0.99031 0.95772 1.22758 0.99658 1.00569 0.93854 1.23543 0.97991 0.95950 0.98639 0.90222 1.23528 0.97462 0.96910 0.91691 0.92699 0.92028 0.91772 0.89869 0.92655 0.91277 0.88222 0.89863 0.91944 0.88065 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.26 11.10 21.45 0.24 -52.02 15 2 C 0.03 1.47 5.27 84.66 0.45 1.92 15 3 Si 0.96 43.15 29.54 68.60 2.03 45.17 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 7 C -0.57 -31.19 7.50 25.60 0.19 -31.00 15 8 H 0.06 3.34 7.75 -2.91 -0.02 3.32 15 9 C 0.23 11.58 0.55 -11.15 -0.01 11.57 15 10 F -0.25 -14.36 15.26 44.97 0.69 -13.67 15 11 C -0.15 -7.09 4.27 30.64 0.13 -6.96 15 12 C 0.04 1.47 5.74 86.15 0.49 1.97 15 13 N -0.50 -17.56 6.07 -878.38 -5.33 -22.88 15 14 C 0.03 1.00 6.20 86.40 0.54 1.53 15 15 C -0.13 -4.48 5.81 31.63 0.18 -4.30 15 16 C -0.14 -5.75 3.54 -8.99 -0.03 -5.78 15 17 H 0.08 3.25 8.14 -2.39 -0.02 3.23 15 18 C 0.03 1.17 6.36 86.72 0.55 1.73 15 19 H 0.26 14.57 8.31 -92.71 -0.77 13.80 15 20 H 0.06 2.80 5.36 -2.39 -0.01 2.79 15 21 H 0.06 3.46 6.29 -2.39 -0.02 3.45 15 22 H 0.08 2.92 8.14 -2.39 -0.02 2.90 15 23 H 0.05 2.32 7.84 -2.39 -0.02 2.30 15 24 H 0.07 2.14 6.94 -2.38 -0.02 2.12 15 25 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.06 2.43 6.31 -2.39 -0.02 2.42 15 28 H 0.10 3.04 8.14 -2.39 -0.02 3.02 15 29 H 0.06 2.48 6.97 -2.39 -0.02 2.46 15 Total: -1.00 -61.04 225.00 1.26 -59.78 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.14 Total: 12.94 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.50 Total: -29.32 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -5.09 Total: -74.91 kcal Atomic # 9 Polarization: -14.36 SS G_CDS: 0.69 Total: -13.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -61.04 1.26 -59.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.269 kcal (2) G-P(sol) polarization free energy of solvation -61.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds